Wall clock time and date at job start Tue Mar 31 2020 19:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50702 * 120.00729 * 2 1 4 4 H 1.08996 * 109.47052 * 244.99983 * 3 2 1 5 5 O 1.42901 * 109.46793 * 4.99624 * 3 2 1 6 6 C 1.50698 * 109.47132 * 124.99612 * 3 2 1 7 7 N 1.30291 * 126.35110 * 285.02250 * 6 3 2 8 8 N 1.28521 * 110.05669 * 179.97438 * 7 6 3 9 9 C 1.31218 * 109.86075 * 359.97438 * 8 7 6 10 10 N 1.38577 * 126.47765 * 180.02562 * 9 8 7 11 11 C 1.46903 * 111.00427 * 255.10187 * 10 9 8 12 12 C 1.50701 * 109.46933 * 66.89167 * 11 10 9 13 13 H 1.07991 * 120.00289 * 354.85962 * 12 11 10 14 14 C 1.37881 * 119.99532 * 174.85553 * 12 11 10 15 15 N 1.31512 * 120.00057 * 5.17415 * 14 12 11 16 16 Si 1.86799 * 119.99676 * 185.17488 * 14 12 11 17 17 H 1.48503 * 109.47147 * 65.00351 * 16 14 12 18 18 H 1.48501 * 109.47100 * 184.99784 * 16 14 12 19 19 H 1.48492 * 109.47334 * 305.00081 * 16 14 12 20 20 C 1.46905 * 110.99756 * 19.05221 * 10 9 8 21 21 C 1.53001 * 109.47211 * 162.71558 * 20 10 9 22 22 O 1.42889 * 109.46942 * 67.12465 * 21 20 10 23 23 C 1.42910 * 113.99858 * 184.70222 * 22 21 20 24 24 N 1.36451 * 107.05588 * 0.02562 * 9 8 7 25 25 C 1.46502 * 127.14147 * 179.97438 * 24 9 8 26 26 C 1.53000 * 109.46600 * 94.24270 * 25 24 9 27 27 C 1.53003 * 117.49898 * 243.62077 * 26 25 24 28 28 C 1.53001 * 60.00208 * 252.51250 * 27 26 25 29 29 H 1.07998 * 119.99307 * 0.02562 * 1 2 3 30 30 H 1.07994 * 120.00775 * 179.97438 * 1 2 3 31 31 H 1.08008 * 119.99852 * 179.97438 * 2 1 3 32 32 H 0.96705 * 113.99623 * 60.00142 * 5 3 2 33 33 H 1.09002 * 109.47296 * 186.89512 * 11 10 9 34 34 H 1.09001 * 109.46908 * 306.89527 * 11 10 9 35 35 H 0.96998 * 120.00306 * 180.02562 * 15 14 12 36 36 H 1.08998 * 109.47030 * 282.71711 * 20 10 9 37 37 H 1.09005 * 109.46790 * 42.71228 * 20 10 9 38 38 H 1.09000 * 109.46674 * 187.12409 * 21 20 10 39 39 H 1.08997 * 109.47010 * 307.12036 * 21 20 10 40 40 H 1.09000 * 109.47156 * 184.93609 * 23 22 21 41 41 H 1.09000 * 109.47103 * 304.93457 * 23 22 21 42 42 H 1.08997 * 109.47080 * 64.93246 * 23 22 21 43 43 H 1.08992 * 109.47294 * 214.23797 * 25 24 9 44 44 H 1.08992 * 109.46930 * 334.24938 * 25 24 9 45 45 H 1.09000 * 115.55565 * 29.33041 * 26 25 24 46 46 H 1.09003 * 117.49710 * 0.02562 * 27 26 25 47 47 H 1.09003 * 117.49791 * 145.02391 * 27 26 25 48 48 H 1.08997 * 117.49655 * 252.50899 * 28 27 26 49 49 H 1.09003 * 117.49308 * 107.48756 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 2.6214 1.4024 -0.9313 5 8 1.1395 2.3887 0.1173 6 6 3.0205 1.3325 1.1639 7 7 2.7087 1.5137 2.4159 8 7 3.7675 1.4783 3.1434 9 6 4.8204 1.2702 2.3885 10 7 6.1345 1.1702 2.8168 11 6 6.8877 2.3896 2.4943 12 6 6.3516 3.5405 3.3060 13 1 5.4812 3.4020 3.9301 14 6 6.9725 4.7704 3.2519 15 7 7.9688 4.9679 2.4165 16 14 6.3984 6.1562 4.3653 17 1 6.6553 5.7919 5.7818 18 1 7.1400 7.3988 4.0315 19 1 4.9438 6.3797 4.1676 20 6 6.1986 0.8768 4.2548 21 6 7.5927 0.3541 4.6070 22 8 8.5509 1.4002 4.4356 23 6 9.9042 0.9875 4.6370 24 7 4.3770 1.1709 1.1018 25 6 5.1862 0.9395 -0.0973 26 6 5.2183 -0.5580 -0.4095 27 6 6.5734 -1.2650 -0.3408 28 6 5.9187 -0.9963 -1.6973 29 1 -0.5399 0.9354 -0.0004 30 1 -0.5401 -0.9352 -0.0004 31 1 1.8500 -0.9354 0.0004 32 1 0.6076 2.3663 0.9247 33 1 7.9413 2.2387 2.7294 34 1 6.7806 2.6127 1.4327 35 1 8.4059 5.8330 2.3787 36 1 5.9980 1.7866 4.8205 37 1 5.4534 0.1217 4.5050 38 1 7.6034 0.0180 5.6438 39 1 7.8442 -0.4800 3.9520 40 1 10.5616 1.8548 4.5753 41 1 10.0012 0.5274 5.6203 42 1 10.1821 0.2656 3.8691 43 1 4.7500 1.4768 -0.9393 44 1 6.2014 1.2965 0.0751 45 1 4.3395 -1.1223 -0.0975 46 1 7.4419 -0.6634 -0.0727 47 1 6.5862 -2.2947 0.0166 48 1 5.5009 -1.8491 -2.2323 49 1 6.3567 -0.2177 -2.3220 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345796413.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:32 Heat of formation + Delta-G solvation = 52.906891 kcal Electronic energy + Delta-G solvation = -31117.949003 eV Core-core repulsion = 27084.196667 eV Total energy + Delta-G solvation = -4033.752336 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.39617 -38.10853 -37.70643 -37.61484 -36.03249 -33.92234 -32.77855 -32.47603 -30.15172 -28.97161 -27.56736 -26.74671 -25.91665 -25.45138 -22.90748 -22.44514 -21.97490 -21.31682 -20.57945 -19.78023 -19.62290 -17.44151 -16.90873 -16.42730 -16.17299 -15.96154 -15.73223 -15.47407 -15.28811 -14.85314 -14.43444 -14.30433 -14.15005 -14.11600 -13.39592 -13.13843 -12.99570 -12.54964 -12.36680 -11.88155 -11.83746 -11.59887 -11.57118 -11.47655 -11.22007 -11.07818 -11.06816 -10.93136 -10.71357 -10.62236 -10.46605 -10.35367 -10.20376 -9.92527 -9.90673 -9.72114 -9.51718 -9.48284 -9.03092 -8.65734 -8.32304 -7.43181 -6.00515 -4.03174 2.05358 2.36071 2.78439 3.37964 3.39765 3.46063 3.50418 3.70103 4.32263 4.39208 4.46040 4.49679 4.57102 4.67356 4.78158 4.81041 4.91512 5.08369 5.12698 5.25567 5.29479 5.35558 5.53725 5.55393 5.60590 5.69426 5.75743 5.76600 5.83615 5.84661 5.89750 5.95574 6.02503 6.05139 6.12102 6.13917 6.31689 6.41848 6.56570 6.63221 6.78975 6.99263 7.31751 7.54043 7.58786 7.59575 7.79814 7.95518 8.20292 8.24204 9.01867 9.40326 9.61678 11.07317 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009784 B = 0.004761 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.987482 B = 5879.504084 C = 7263.236733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.181 4.181 3 C 0.237 3.763 4 H 0.117 0.883 5 O -0.543 6.543 6 C 0.118 3.882 7 N -0.277 5.277 8 N -0.332 5.332 9 C 0.415 3.585 10 N -0.463 5.463 11 C 0.190 3.810 12 C -0.539 4.539 13 H 0.064 0.936 14 C 0.073 3.927 15 N -0.892 5.892 16 Si 0.888 3.112 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.278 1.278 20 C 0.074 3.926 21 C 0.071 3.929 22 O -0.353 6.353 23 C 0.032 3.968 24 N -0.465 5.465 25 C 0.141 3.859 26 C -0.170 4.170 27 C -0.164 4.164 28 C -0.173 4.173 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.387 0.613 33 H 0.081 0.919 34 H 0.017 0.983 35 H 0.261 0.739 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.080 0.920 41 H 0.030 0.970 42 H 0.032 0.968 43 H 0.089 0.911 44 H 0.107 0.893 45 H 0.105 0.895 46 H 0.102 0.898 47 H 0.092 0.908 48 H 0.095 0.905 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.898 -14.154 -6.578 16.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.200 4.200 3 C 0.175 3.825 4 H 0.135 0.865 5 O -0.348 6.348 6 C -0.150 4.150 7 N -0.118 5.118 8 N -0.176 5.176 9 C 0.059 3.941 10 N -0.188 5.188 11 C 0.067 3.933 12 C -0.578 4.578 13 H 0.082 0.918 14 C -0.130 4.130 15 N -0.530 5.530 16 Si 0.716 3.284 17 H -0.201 1.201 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.054 4.054 21 C -0.007 4.007 22 O -0.271 6.271 23 C -0.066 4.066 24 N -0.160 5.160 25 C 0.018 3.982 26 C -0.189 4.189 27 C -0.201 4.201 28 C -0.210 4.210 29 H 0.126 0.874 30 H 0.119 0.881 31 H 0.132 0.868 32 H 0.237 0.763 33 H 0.098 0.902 34 H 0.035 0.965 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.099 0.901 41 H 0.048 0.952 42 H 0.051 0.949 43 H 0.108 0.892 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.111 0.889 48 H 0.114 0.886 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.145 -13.778 -6.273 15.696 hybrid contribution 0.304 0.751 0.458 0.930 sum -3.841 -13.027 -5.815 14.774 Atomic orbital electron populations 1.23814 0.95754 1.02505 0.98810 1.23379 0.96729 0.98109 1.01822 1.18764 0.86060 0.85341 0.92369 0.86537 1.86554 1.53663 1.47798 1.46816 1.24965 0.82680 1.09718 0.97617 1.73694 1.22236 1.16729 0.99134 1.74648 0.94723 1.23058 1.25201 1.22716 0.93577 0.96676 0.81089 1.59521 1.03116 1.38901 1.17246 1.20213 0.95360 0.81992 0.95706 1.21585 1.13378 0.95433 1.27393 0.91778 1.24795 0.94754 0.98302 0.95134 1.69922 1.23351 1.23859 1.35912 0.86714 0.78795 0.81336 0.81599 1.20127 1.21410 1.20320 1.21966 0.94349 1.02127 0.86951 1.22475 0.89529 0.90448 0.98234 1.88329 1.14069 1.33815 1.90919 1.22649 0.85269 1.00406 0.98230 1.45900 1.06729 1.55493 1.07909 1.21417 0.97398 0.94307 0.85084 1.22549 0.97875 0.95379 1.03093 1.23029 0.96025 1.01578 0.99511 1.22972 1.04016 1.03372 0.90687 0.87432 0.88088 0.86795 0.76347 0.90154 0.96493 0.92975 0.90066 0.90684 0.93555 0.93608 0.90095 0.95191 0.94913 0.89234 0.87468 0.87697 0.87923 0.88905 0.88647 0.88403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 13.91 29.02 0.40 -1.30 16 2 C -0.18 -2.06 9.49 -36.02 -0.34 -2.40 16 3 C 0.24 3.24 3.93 -29.04 -0.11 3.13 16 4 H 0.12 1.43 7.06 -51.93 -0.37 1.06 16 5 O -0.54 -7.77 12.17 -35.23 -0.43 -8.20 16 6 C 0.12 2.10 6.91 -154.01 -1.06 1.04 16 7 N -0.28 -5.79 12.10 32.99 0.40 -5.39 16 8 N -0.33 -7.59 11.17 30.31 0.34 -7.25 16 9 C 0.42 8.85 6.01 -318.88 -1.92 6.94 16 10 N -0.46 -9.72 4.68 -175.87 -0.82 -10.55 16 11 C 0.19 4.69 4.52 -4.97 -0.02 4.67 16 12 C -0.54 -14.98 7.55 -34.44 -0.26 -15.24 16 13 H 0.06 1.88 6.38 -52.49 -0.34 1.54 16 14 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 15 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 16 Si 0.89 22.52 29.54 -169.99 -5.02 17.50 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.28 -7.20 7.11 56.52 0.40 -6.79 16 20 C 0.07 1.45 4.83 -3.82 -0.02 1.44 16 21 C 0.07 1.20 6.23 37.16 0.23 1.43 16 22 O -0.35 -6.96 7.79 -35.23 -0.27 -7.24 16 23 C 0.03 0.48 11.01 101.05 1.11 1.59 16 24 N -0.47 -8.46 2.81 -114.09 -0.32 -8.78 16 25 C 0.14 2.06 6.13 -4.04 -0.02 2.03 16 26 C -0.17 -1.99 6.01 -90.61 -0.54 -2.53 16 27 C -0.16 -1.81 10.18 -26.73 -0.27 -2.08 16 28 C -0.17 -1.61 10.25 -26.73 -0.27 -1.88 16 29 H 0.11 1.02 6.56 -52.49 -0.34 0.68 16 30 H 0.10 0.83 8.06 -52.49 -0.42 0.41 16 31 H 0.11 1.21 8.06 -52.48 -0.42 0.79 16 32 H 0.39 4.91 8.21 45.56 0.37 5.28 16 33 H 0.08 2.09 5.59 -51.93 -0.29 1.80 16 34 H 0.02 0.45 6.53 -51.93 -0.34 0.11 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.08 1.87 6.04 -51.93 -0.31 1.55 16 37 H 0.07 1.38 7.78 -51.93 -0.40 0.98 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.09 1.13 7.27 -51.93 -0.38 0.76 16 44 H 0.11 1.75 6.20 -51.93 -0.32 1.43 16 45 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 46 H 0.10 1.23 8.03 -51.93 -0.42 0.82 16 47 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 400.63 15.07 6.04 6.04 Total: -1.00 -33.27 400.63 -9.48 -42.75 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -6.92 Total: 7.49 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -3.20 Total: -1.20 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: 0.33 Total: -57.14 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.70 Total: -15.44 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.27 -9.48 -42.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345796413.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.656 kcal (2) G-P(sol) polarization free energy of solvation -33.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds