Wall clock time and date at job start Tue Mar 31 2020 19:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50702 * 120.00729 * 2 1 4 4 H 1.08996 * 109.47052 * 244.99983 * 3 2 1 5 5 O 1.42901 * 109.46793 * 4.99624 * 3 2 1 6 6 C 1.50698 * 109.47132 * 124.99612 * 3 2 1 7 7 N 1.30291 * 126.35110 * 285.02250 * 6 3 2 8 8 N 1.28521 * 110.05669 * 179.97438 * 7 6 3 9 9 C 1.31218 * 109.86075 * 359.97438 * 8 7 6 10 10 N 1.38577 * 126.47765 * 180.02562 * 9 8 7 11 11 C 1.46903 * 111.00427 * 255.10187 * 10 9 8 12 12 C 1.50701 * 109.46933 * 66.89167 * 11 10 9 13 13 H 1.07991 * 120.00289 * 354.85962 * 12 11 10 14 14 C 1.37881 * 119.99532 * 174.85553 * 12 11 10 15 15 N 1.31512 * 120.00057 * 5.17415 * 14 12 11 16 16 Si 1.86799 * 119.99676 * 185.17488 * 14 12 11 17 17 H 1.48503 * 109.47147 * 65.00351 * 16 14 12 18 18 H 1.48501 * 109.47100 * 184.99784 * 16 14 12 19 19 H 1.48492 * 109.47334 * 305.00081 * 16 14 12 20 20 C 1.46905 * 110.99756 * 19.05221 * 10 9 8 21 21 C 1.53001 * 109.47211 * 162.71558 * 20 10 9 22 22 O 1.42889 * 109.46942 * 67.12465 * 21 20 10 23 23 C 1.42910 * 113.99858 * 184.70222 * 22 21 20 24 24 N 1.36451 * 107.05588 * 0.02562 * 9 8 7 25 25 C 1.46502 * 127.14147 * 179.97438 * 24 9 8 26 26 C 1.53000 * 109.46600 * 94.24270 * 25 24 9 27 27 C 1.53003 * 117.49898 * 243.62077 * 26 25 24 28 28 C 1.53001 * 60.00208 * 252.51250 * 27 26 25 29 29 H 1.07998 * 119.99307 * 0.02562 * 1 2 3 30 30 H 1.07994 * 120.00775 * 179.97438 * 1 2 3 31 31 H 1.08008 * 119.99852 * 179.97438 * 2 1 3 32 32 H 0.96705 * 113.99623 * 60.00142 * 5 3 2 33 33 H 1.09002 * 109.47296 * 186.89512 * 11 10 9 34 34 H 1.09001 * 109.46908 * 306.89527 * 11 10 9 35 35 H 0.96998 * 120.00306 * 180.02562 * 15 14 12 36 36 H 1.08998 * 109.47030 * 282.71711 * 20 10 9 37 37 H 1.09005 * 109.46790 * 42.71228 * 20 10 9 38 38 H 1.09000 * 109.46674 * 187.12409 * 21 20 10 39 39 H 1.08997 * 109.47010 * 307.12036 * 21 20 10 40 40 H 1.09000 * 109.47156 * 184.93609 * 23 22 21 41 41 H 1.09000 * 109.47103 * 304.93457 * 23 22 21 42 42 H 1.08997 * 109.47080 * 64.93246 * 23 22 21 43 43 H 1.08992 * 109.47294 * 214.23797 * 25 24 9 44 44 H 1.08992 * 109.46930 * 334.24938 * 25 24 9 45 45 H 1.09000 * 115.55565 * 29.33041 * 26 25 24 46 46 H 1.09003 * 117.49710 * 0.02562 * 27 26 25 47 47 H 1.09003 * 117.49791 * 145.02391 * 27 26 25 48 48 H 1.08997 * 117.49655 * 252.50899 * 28 27 26 49 49 H 1.09003 * 117.49308 * 107.48756 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 2.6214 1.4024 -0.9313 5 8 1.1395 2.3887 0.1173 6 6 3.0205 1.3325 1.1639 7 7 2.7087 1.5137 2.4159 8 7 3.7675 1.4783 3.1434 9 6 4.8204 1.2702 2.3885 10 7 6.1345 1.1702 2.8168 11 6 6.8877 2.3896 2.4943 12 6 6.3516 3.5405 3.3060 13 1 5.4812 3.4020 3.9301 14 6 6.9725 4.7704 3.2519 15 7 7.9688 4.9679 2.4165 16 14 6.3984 6.1562 4.3653 17 1 6.6553 5.7919 5.7818 18 1 7.1400 7.3988 4.0315 19 1 4.9438 6.3797 4.1676 20 6 6.1986 0.8768 4.2548 21 6 7.5927 0.3541 4.6070 22 8 8.5509 1.4002 4.4356 23 6 9.9042 0.9875 4.6370 24 7 4.3770 1.1709 1.1018 25 6 5.1862 0.9395 -0.0973 26 6 5.2183 -0.5580 -0.4095 27 6 6.5734 -1.2650 -0.3408 28 6 5.9187 -0.9963 -1.6973 29 1 -0.5399 0.9354 -0.0004 30 1 -0.5401 -0.9352 -0.0004 31 1 1.8500 -0.9354 0.0004 32 1 0.6076 2.3663 0.9247 33 1 7.9413 2.2387 2.7294 34 1 6.7806 2.6127 1.4327 35 1 8.4059 5.8330 2.3787 36 1 5.9980 1.7866 4.8205 37 1 5.4534 0.1217 4.5050 38 1 7.6034 0.0180 5.6438 39 1 7.8442 -0.4800 3.9520 40 1 10.5616 1.8548 4.5753 41 1 10.0012 0.5274 5.6203 42 1 10.1821 0.2656 3.8691 43 1 4.7500 1.4768 -0.9393 44 1 6.2014 1.2965 0.0751 45 1 4.3395 -1.1223 -0.0975 46 1 7.4419 -0.6634 -0.0727 47 1 6.5862 -2.2947 0.0166 48 1 5.5009 -1.8491 -2.2323 49 1 6.3567 -0.2177 -2.3220 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345796413.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:31 Heat of formation + Delta-G solvation = 31.323360 kcal Electronic energy + Delta-G solvation = -31118.884935 eV Core-core repulsion = 27084.196667 eV Total energy + Delta-G solvation = -4034.688268 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.91432 -39.55110 -38.85053 -38.63561 -37.58081 -35.26368 -34.62008 -33.71914 -31.56253 -30.59095 -28.99977 -28.19858 -27.26909 -26.94597 -24.69071 -23.56640 -23.22080 -22.53333 -21.67194 -21.31273 -20.69408 -18.92771 -18.52430 -17.80737 -17.51819 -17.48642 -16.96675 -16.86678 -16.61257 -16.29077 -15.98481 -15.63607 -15.45658 -15.27844 -14.95578 -14.57217 -14.20412 -13.94251 -13.49276 -13.40853 -13.29728 -12.99737 -12.92775 -12.77929 -12.68345 -12.53564 -12.49753 -12.36028 -12.33511 -12.16251 -11.99970 -11.71370 -11.58537 -11.46691 -11.38051 -10.96789 -10.89014 -10.62546 -10.45526 -10.34535 -10.25096 -9.16236 -8.17902 -6.26229 0.83148 1.16130 1.31787 1.32676 1.40889 1.50738 1.90031 2.37614 2.80568 3.01318 3.11091 3.14184 3.21936 3.36278 3.60016 3.79329 3.84876 3.97093 4.01935 4.12239 4.20025 4.20423 4.31601 4.36129 4.43542 4.50479 4.54788 4.61604 4.64574 4.69872 4.82310 4.88727 4.93967 4.99588 5.01456 5.08612 5.14854 5.19199 5.23077 5.28669 5.48918 5.61234 5.69354 5.75380 5.78819 5.85718 6.13183 6.46503 6.48859 6.55994 6.84898 7.39905 7.83568 8.87831 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009784 B = 0.004761 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.987482 B = 5879.504084 C = 7263.236733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.197 4.197 3 C 0.238 3.762 4 H 0.133 0.867 5 O -0.552 6.552 6 C 0.138 3.862 7 N -0.311 5.311 8 N -0.364 5.364 9 C 0.391 3.609 10 N -0.449 5.449 11 C 0.213 3.787 12 C -0.542 4.542 13 H 0.044 0.956 14 C 0.029 3.971 15 N -0.914 5.914 16 Si 0.938 3.062 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.287 1.287 20 C 0.076 3.924 21 C 0.076 3.924 22 O -0.397 6.397 23 C 0.029 3.971 24 N -0.463 5.463 25 C 0.136 3.864 26 C -0.178 4.178 27 C -0.174 4.174 28 C -0.143 4.143 29 H 0.110 0.890 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.392 0.608 33 H 0.070 0.930 34 H -0.004 1.004 35 H 0.263 0.737 36 H 0.043 0.957 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.109 0.891 44 H 0.084 0.916 45 H 0.106 0.894 46 H 0.086 0.914 47 H 0.103 0.897 48 H 0.119 0.881 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.499 -15.828 -7.809 18.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.216 4.216 3 C 0.176 3.824 4 H 0.151 0.849 5 O -0.358 6.358 6 C -0.132 4.132 7 N -0.151 5.151 8 N -0.209 5.209 9 C 0.033 3.967 10 N -0.173 5.173 11 C 0.089 3.911 12 C -0.581 4.581 13 H 0.062 0.938 14 C -0.171 4.171 15 N -0.554 5.554 16 Si 0.764 3.236 17 H -0.197 1.197 18 H -0.201 1.201 19 H -0.214 1.214 20 C -0.052 4.052 21 C -0.001 4.001 22 O -0.316 6.316 23 C -0.067 4.067 24 N -0.157 5.157 25 C 0.015 3.985 26 C -0.197 4.197 27 C -0.211 4.211 28 C -0.181 4.181 29 H 0.128 0.872 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.243 0.757 33 H 0.087 0.913 34 H 0.014 0.986 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.127 0.873 44 H 0.103 0.897 45 H 0.125 0.875 46 H 0.105 0.895 47 H 0.121 0.879 48 H 0.137 0.863 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.746 -15.467 -7.508 17.836 hybrid contribution 0.390 1.246 0.799 1.531 sum -4.356 -14.221 -6.709 16.316 Atomic orbital electron populations 1.24061 0.95294 1.03710 0.96063 1.23248 0.97136 0.96980 1.04244 1.19079 0.85610 0.86652 0.91074 0.84944 1.86539 1.53663 1.48406 1.47149 1.25899 0.83043 1.06279 0.97962 1.73608 1.22005 1.19006 1.00504 1.74528 0.95680 1.23804 1.26844 1.22812 0.93315 0.98138 0.82391 1.59486 1.03039 1.36803 1.17973 1.19759 0.95051 0.82574 0.93724 1.21724 1.12578 0.96672 1.27081 0.93820 1.25408 0.95128 1.00224 0.96322 1.69991 1.24135 1.24404 1.36858 0.85932 0.77721 0.79552 0.80353 1.19661 1.20080 1.21354 1.21985 0.96835 1.00711 0.85642 1.22500 0.87365 0.89995 1.00204 1.88241 1.16209 1.35709 1.91474 1.22784 0.83039 1.00682 1.00221 1.46172 1.07183 1.54470 1.07905 1.21651 0.95825 0.96913 0.84160 1.22392 0.98374 0.93143 1.05759 1.23052 0.94966 1.01698 1.01400 1.23083 1.01588 1.03765 0.89623 0.87198 0.85877 0.85901 0.75714 0.91280 0.98576 0.92796 0.93877 0.89625 0.90780 0.91822 0.90774 0.92639 0.93380 0.87262 0.89742 0.87542 0.89543 0.87893 0.86256 0.87726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 13.91 67.79 0.94 -1.69 16 2 C -0.20 -4.03 9.49 25.65 0.24 -3.79 16 3 C 0.24 6.17 3.93 29.10 0.11 6.28 16 4 H 0.13 2.97 7.06 -2.39 -0.02 2.95 16 5 O -0.55 -15.12 12.17 -148.98 -1.81 -16.94 16 6 C 0.14 4.87 6.91 137.64 0.95 5.82 16 7 N -0.31 -13.23 12.10 -49.54 -0.60 -13.83 16 8 N -0.36 -17.20 11.17 -58.01 -0.65 -17.85 16 9 C 0.39 17.14 6.01 260.11 1.56 18.70 16 10 N -0.45 -19.43 4.68 -710.33 -3.32 -22.76 16 11 C 0.21 10.92 4.52 85.56 0.39 11.30 16 12 C -0.54 -31.16 7.55 25.60 0.19 -30.97 16 13 H 0.04 2.67 6.38 -2.92 -0.02 2.65 16 14 C 0.03 1.70 5.45 84.66 0.46 2.16 16 15 N -0.91 -54.05 13.29 21.45 0.29 -53.77 16 16 Si 0.94 47.10 29.54 68.60 2.03 49.12 16 17 H -0.27 -13.33 7.11 99.48 0.71 -12.62 16 18 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 19 H -0.29 -14.79 7.11 99.48 0.71 -14.08 16 20 C 0.08 3.08 4.83 86.30 0.42 3.49 16 21 C 0.08 2.54 6.23 71.98 0.45 2.99 16 22 O -0.40 -15.73 7.79 -148.98 -1.16 -16.89 16 23 C 0.03 0.85 11.01 113.37 1.25 2.10 16 24 N -0.46 -16.99 2.81 -514.87 -1.45 -18.43 16 25 C 0.14 3.94 6.13 86.38 0.53 4.47 16 26 C -0.18 -3.89 6.01 -10.79 -0.06 -3.96 16 27 C -0.17 -3.59 10.18 30.60 0.31 -3.28 16 28 C -0.14 -2.26 10.25 30.60 0.31 -1.95 16 29 H 0.11 1.82 6.56 -2.91 -0.02 1.80 16 30 H 0.12 1.58 8.06 -2.91 -0.02 1.56 16 31 H 0.12 2.30 8.06 -2.91 -0.02 2.28 16 32 H 0.39 9.65 8.21 -74.05 -0.61 9.04 16 33 H 0.07 3.73 5.59 -2.39 -0.01 3.72 16 34 H 0.00 -0.20 6.53 -2.39 -0.02 -0.22 16 35 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 36 H 0.04 2.07 6.04 -2.39 -0.01 2.06 16 37 H 0.09 3.23 7.78 -2.38 -0.02 3.21 16 38 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.11 2.65 7.27 -2.39 -0.02 2.63 16 44 H 0.08 2.85 6.20 -2.39 -0.01 2.83 16 45 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 46 H 0.09 2.07 8.03 -2.39 -0.02 2.05 16 47 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -74.27 400.63 1.73 -72.54 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: 0.35 Total: 27.11 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 8.06 Total: 11.69 kcal Atomic # 7 Polarization: -120.91 SS G_CDS: -5.73 Total: -126.64 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -2.97 Total: -33.83 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.12 kcal Total: -74.27 1.73 -72.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345796413.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.862 kcal (2) G-P(sol) polarization free energy of solvation -74.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds