Wall clock time and date at job start Tue Mar 31 2020 19:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 120.00212 * 2 1 4 4 H 1.08998 * 109.47445 * 359.97438 * 3 2 1 5 5 O 1.42907 * 109.47031 * 239.99869 * 3 2 1 6 6 C 1.50703 * 109.47009 * 120.00248 * 3 2 1 7 7 N 1.30286 * 126.34924 * 74.68962 * 6 3 2 8 8 N 1.28533 * 110.05683 * 179.82054 * 7 6 3 9 9 C 1.31218 * 109.85491 * 0.45112 * 8 7 6 10 10 N 1.38577 * 126.47136 * 179.73052 * 9 8 7 11 11 C 1.46905 * 111.00102 * 236.04733 * 10 9 8 12 12 C 1.50690 * 109.47088 * 62.03759 * 11 10 9 13 13 H 1.08002 * 120.00318 * 358.82541 * 12 11 10 14 14 C 1.37887 * 120.00105 * 178.81993 * 12 11 10 15 15 N 1.31509 * 120.00190 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 119.99678 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47325 * 89.99876 * 16 14 12 18 18 H 1.48494 * 109.47275 * 209.99937 * 16 14 12 19 19 H 1.48503 * 109.47258 * 329.99539 * 16 14 12 20 20 C 1.46904 * 111.00141 * 359.97438 * 10 9 8 21 21 C 1.52994 * 109.47102 * 162.42801 * 20 10 9 22 22 O 1.42899 * 109.47452 * 66.37757 * 21 20 10 23 23 C 1.42906 * 114.00241 * 179.97438 * 22 21 20 24 24 N 1.36453 * 107.05604 * 359.73041 * 9 8 7 25 25 C 1.46501 * 127.13482 * 180.02562 * 24 9 8 26 26 C 1.52998 * 109.47095 * 269.96883 * 25 24 9 27 27 C 1.52999 * 117.50204 * 243.62601 * 26 25 24 28 28 C 1.52992 * 117.50110 * 175.00045 * 26 25 24 29 29 H 1.07991 * 120.00603 * 179.97438 * 1 2 3 30 30 H 1.08004 * 119.99716 * 359.97438 * 1 2 3 31 31 H 1.08004 * 119.99716 * 180.02562 * 2 1 3 32 32 H 0.96697 * 113.99674 * 300.00120 * 5 3 2 33 33 H 1.09002 * 109.47142 * 182.04312 * 11 10 9 34 34 H 1.09004 * 109.46481 * 302.03899 * 11 10 9 35 35 H 0.96996 * 119.99980 * 179.97438 * 15 14 12 36 36 H 1.09006 * 109.46942 * 282.42402 * 20 10 9 37 37 H 1.08995 * 109.47054 * 42.42456 * 20 10 9 38 38 H 1.08998 * 109.47359 * 186.38089 * 21 20 10 39 39 H 1.09004 * 109.47251 * 306.37969 * 21 20 10 40 40 H 1.08996 * 109.47278 * 180.02562 * 23 22 21 41 41 H 1.08998 * 109.47391 * 300.00539 * 23 22 21 42 42 H 1.09002 * 109.46725 * 60.00368 * 23 22 21 43 43 H 1.08995 * 109.47459 * 29.97105 * 25 24 9 44 44 H 1.09004 * 109.46622 * 149.97308 * 25 24 9 45 45 H 1.08999 * 115.54715 * 29.33349 * 26 25 24 46 46 H 1.08995 * 117.49873 * 359.97438 * 27 26 25 47 47 H 1.09005 * 117.49923 * 145.02059 * 27 26 25 48 48 H 1.08998 * 117.50423 * 214.97950 * 28 26 25 49 49 H 1.08999 * 117.50204 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3553 2.1336 -0.0005 5 8 2.8851 1.3807 -1.1668 6 6 2.9300 1.3848 1.2305 7 7 4.0424 0.7380 1.4348 8 7 4.5239 1.0425 2.5870 9 6 3.7330 1.8996 3.1883 10 7 3.9203 2.4514 4.4456 11 6 2.7605 2.1965 5.3105 12 6 2.5924 0.7111 5.5005 13 1 3.2669 0.0243 5.0108 14 6 1.5775 0.2287 6.2995 15 7 1.4304 -1.0676 6.4649 16 14 0.4105 1.4166 7.1459 17 1 -0.7508 1.6854 6.2602 18 1 -0.0660 0.8196 8.4193 19 1 1.1205 2.6893 7.4312 20 6 5.1561 1.9503 5.0618 21 6 5.5624 2.8726 6.2129 22 8 4.5908 2.7873 7.2573 23 6 4.8775 3.6144 8.3868 24 7 2.6913 2.1449 2.3418 25 6 1.5535 3.0378 2.5750 26 6 0.4212 2.2568 3.2449 27 6 -0.8895 2.1082 2.4697 28 6 -0.8178 3.0421 3.6795 29 1 -0.5401 -0.9352 -0.0004 30 1 -0.5400 0.9354 0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 3.5405 0.6727 -1.2329 33 1 2.9182 2.6712 6.2790 34 1 1.8639 2.6073 4.8463 35 1 0.7167 -1.4069 7.0273 36 1 4.9889 0.9435 5.4446 37 1 5.9508 1.9282 4.3161 38 1 6.5360 2.5676 6.5965 39 1 5.6193 3.8998 5.8527 40 1 4.0940 3.4924 9.1347 41 1 5.8368 3.3245 8.8155 42 1 4.9205 4.6571 8.0720 43 1 1.8622 3.8580 3.2232 44 1 1.2050 3.4384 1.6231 45 1 0.7331 1.4214 3.8717 46 1 -0.9452 2.5672 1.4827 47 1 -1.4401 1.1747 2.5863 48 1 -1.3214 2.7230 4.5920 49 1 -0.8265 4.1150 3.4879 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345796414.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:36 Heat of formation + Delta-G solvation = 58.903724 kcal Electronic energy + Delta-G solvation = -31877.430260 eV Core-core repulsion = 27843.937967 eV Total energy + Delta-G solvation = -4033.492293 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.40466 -38.18956 -37.64785 -37.39189 -36.13598 -33.86906 -33.19531 -32.53724 -30.08669 -29.28317 -27.81168 -26.82591 -25.79008 -25.50405 -22.76981 -22.33172 -21.96222 -21.12607 -20.69362 -19.80535 -19.45788 -17.47400 -17.21665 -16.61928 -16.25599 -15.78837 -15.66281 -15.56116 -15.06577 -14.68465 -14.52126 -14.29955 -14.23326 -14.10478 -13.56938 -13.24757 -12.84473 -12.50678 -12.44582 -12.15730 -12.03688 -11.79036 -11.50830 -11.42082 -11.27623 -11.24546 -11.11975 -11.00590 -10.74887 -10.39300 -10.31271 -10.23195 -10.08372 -9.83850 -9.73745 -9.65970 -9.55268 -9.45374 -9.18854 -8.86702 -8.60692 -7.36622 -6.14269 -4.13580 2.08072 2.50909 2.81368 3.14546 3.27311 3.31510 3.51620 3.91695 4.23108 4.31810 4.48051 4.52476 4.57375 4.79308 4.84477 4.91406 5.02280 5.17100 5.19704 5.22446 5.39312 5.44699 5.51663 5.55568 5.63871 5.67371 5.71565 5.72595 5.76477 5.85865 5.92065 5.93281 6.02892 6.05388 6.26329 6.34496 6.56552 6.58508 6.66702 6.70210 6.71958 6.81966 7.06388 7.23898 7.34160 7.57783 7.61658 7.69056 8.02359 8.35619 8.90167 9.40953 9.45760 10.98359 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010944 B = 0.005590 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.816010 B = 5007.839622 C = 6287.666401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.178 4.178 3 C 0.241 3.759 4 H 0.108 0.892 5 O -0.546 6.546 6 C 0.123 3.877 7 N -0.276 5.276 8 N -0.340 5.340 9 C 0.418 3.582 10 N -0.452 5.452 11 C 0.135 3.865 12 C -0.539 4.539 13 H 0.077 0.923 14 C 0.081 3.919 15 N -0.892 5.892 16 Si 0.864 3.136 17 H -0.271 1.271 18 H -0.289 1.289 19 H -0.259 1.259 20 C 0.070 3.930 21 C 0.070 3.930 22 O -0.364 6.364 23 C 0.028 3.972 24 N -0.466 5.466 25 C 0.146 3.854 26 C -0.178 4.178 27 C -0.176 4.176 28 C -0.176 4.176 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.119 0.881 32 H 0.387 0.613 33 H 0.078 0.922 34 H 0.034 0.966 35 H 0.263 0.737 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.079 0.921 41 H 0.035 0.965 42 H 0.034 0.966 43 H 0.100 0.900 44 H 0.085 0.915 45 H 0.143 0.857 46 H 0.090 0.910 47 H 0.095 0.905 48 H 0.099 0.901 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.527 9.979 -6.577 12.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.197 4.197 3 C 0.179 3.821 4 H 0.126 0.874 5 O -0.351 6.351 6 C -0.145 4.145 7 N -0.117 5.117 8 N -0.185 5.185 9 C 0.062 3.938 10 N -0.175 5.175 11 C 0.010 3.990 12 C -0.577 4.577 13 H 0.095 0.905 14 C -0.123 4.123 15 N -0.530 5.530 16 Si 0.691 3.309 17 H -0.197 1.197 18 H -0.215 1.215 19 H -0.184 1.184 20 C -0.057 4.057 21 C -0.008 4.008 22 O -0.282 6.282 23 C -0.069 4.069 24 N -0.162 5.162 25 C 0.023 3.977 26 C -0.197 4.197 27 C -0.213 4.213 28 C -0.213 4.213 29 H 0.121 0.879 30 H 0.116 0.884 31 H 0.137 0.863 32 H 0.237 0.763 33 H 0.095 0.905 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.098 0.902 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.118 0.882 44 H 0.103 0.897 45 H 0.161 0.839 46 H 0.109 0.891 47 H 0.114 0.886 48 H 0.117 0.883 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.922 9.869 -6.886 12.069 hybrid contribution -1.424 0.218 1.424 2.026 sum -2.346 10.088 -5.462 11.709 Atomic orbital electron populations 1.23849 0.95553 1.02172 0.98473 1.23374 0.96583 0.98431 1.01333 1.18880 0.88160 0.96276 0.78803 0.87442 1.86541 1.51930 1.55515 1.41098 1.24965 0.99239 0.97726 0.92604 1.73652 1.07284 1.19604 1.11131 1.74546 1.26858 1.13901 1.03182 1.22696 0.85671 0.92798 0.92617 1.59254 1.07377 1.52348 0.98506 1.21047 0.86430 0.97949 0.93529 1.21489 1.15633 0.90346 1.30268 0.90521 1.24820 0.97180 0.94687 0.95569 1.69920 1.32327 1.12123 1.38622 0.87079 0.81708 0.82442 0.79697 1.19744 1.21488 1.18360 1.22051 0.90059 0.99192 0.94403 1.22534 0.91134 0.99019 0.88068 1.88225 1.47049 1.65738 1.27183 1.22686 1.00564 0.93896 0.89721 1.45792 1.19813 1.36537 1.14056 1.21361 0.83953 0.91332 1.01046 1.23028 0.88458 1.04153 1.04035 1.23049 1.00972 1.01658 0.95633 1.23031 1.01297 0.97555 0.99444 0.87893 0.88368 0.86335 0.76346 0.90477 0.94791 0.92724 0.89973 0.89320 0.93041 0.93349 0.90226 0.94682 0.94749 0.88195 0.89659 0.83902 0.89126 0.88633 0.88300 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 14.19 29.01 0.41 -1.52 16 2 C -0.18 -2.43 9.10 -36.03 -0.33 -2.76 16 3 C 0.24 3.45 3.75 -29.04 -0.11 3.35 16 4 H 0.11 1.37 6.60 -51.93 -0.34 1.02 16 5 O -0.55 -7.58 13.32 -35.23 -0.47 -8.05 16 6 C 0.12 2.25 6.91 -154.02 -1.06 1.19 16 7 N -0.28 -5.81 12.10 32.99 0.40 -5.41 16 8 N -0.34 -7.71 10.99 30.31 0.33 -7.37 16 9 C 0.42 8.91 6.14 -318.88 -1.96 6.95 16 10 N -0.45 -9.32 4.72 -175.88 -0.83 -10.15 16 11 C 0.13 3.02 3.50 -4.98 -0.02 3.00 16 12 C -0.54 -14.35 7.01 -34.44 -0.24 -14.59 16 13 H 0.08 2.37 6.87 -52.49 -0.36 2.01 16 14 C 0.08 2.21 5.34 -17.82 -0.10 2.12 16 15 N -0.89 -26.57 13.96 55.43 0.77 -25.80 16 16 Si 0.86 20.18 27.44 -169.99 -4.67 15.51 16 17 H -0.27 -5.92 5.77 56.52 0.33 -5.60 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.26 -5.85 6.51 56.52 0.37 -5.48 16 20 C 0.07 1.37 4.96 -3.82 -0.02 1.35 16 21 C 0.07 1.14 6.24 37.15 0.23 1.37 16 22 O -0.36 -6.75 7.70 -35.23 -0.27 -7.02 16 23 C 0.03 0.39 11.01 101.05 1.11 1.51 16 24 N -0.47 -8.70 2.81 -114.09 -0.32 -9.02 16 25 C 0.15 2.24 5.36 -4.04 -0.02 2.22 16 26 C -0.18 -2.92 4.29 -90.63 -0.39 -3.31 16 27 C -0.18 -2.31 9.56 -26.73 -0.26 -2.57 16 28 C -0.18 -2.46 10.25 -26.74 -0.27 -2.73 16 29 H 0.10 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.10 1.01 6.84 -52.48 -0.36 0.65 16 31 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 32 H 0.39 4.64 8.97 45.56 0.41 5.05 16 33 H 0.08 1.80 4.25 -51.93 -0.22 1.58 16 34 H 0.03 0.73 3.10 -51.93 -0.16 0.57 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.08 1.89 6.31 -51.93 -0.33 1.56 16 37 H 0.09 1.64 7.43 -51.93 -0.39 1.26 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.10 1.50 7.60 -51.93 -0.39 1.10 16 44 H 0.09 1.03 6.84 -51.93 -0.36 0.68 16 45 H 0.14 3.09 5.96 -51.93 -0.31 2.78 16 46 H 0.09 0.95 7.55 -51.93 -0.39 0.56 16 47 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 48 H 0.10 1.54 6.81 -51.93 -0.35 1.19 16 49 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 386.57 15.07 5.83 5.83 Total: -1.00 -32.91 386.57 -8.84 -41.75 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: -6.60 Total: 14.19 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -3.02 Total: -4.44 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: 0.36 Total: -57.76 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.74 Total: -15.07 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.67 Total: 15.51 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.91 -8.84 -41.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345796414.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.655 kcal (2) G-P(sol) polarization free energy of solvation -32.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds