Wall clock time and date at job start Tue Mar 31 2020 19:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 120.00212 * 2 1 4 4 H 1.08998 * 109.47445 * 359.97438 * 3 2 1 5 5 O 1.42907 * 109.47031 * 239.99869 * 3 2 1 6 6 C 1.50703 * 109.47009 * 120.00248 * 3 2 1 7 7 N 1.30286 * 126.34924 * 74.68962 * 6 3 2 8 8 N 1.28533 * 110.05683 * 179.82054 * 7 6 3 9 9 C 1.31218 * 109.85491 * 0.45112 * 8 7 6 10 10 N 1.38577 * 126.47136 * 179.73052 * 9 8 7 11 11 C 1.46905 * 111.00102 * 236.04733 * 10 9 8 12 12 C 1.50690 * 109.47088 * 62.03759 * 11 10 9 13 13 H 1.08002 * 120.00318 * 358.82541 * 12 11 10 14 14 C 1.37887 * 120.00105 * 178.81993 * 12 11 10 15 15 N 1.31509 * 120.00190 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 119.99678 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47325 * 89.99876 * 16 14 12 18 18 H 1.48494 * 109.47275 * 209.99937 * 16 14 12 19 19 H 1.48503 * 109.47258 * 329.99539 * 16 14 12 20 20 C 1.46904 * 111.00141 * 359.97438 * 10 9 8 21 21 C 1.52994 * 109.47102 * 162.42801 * 20 10 9 22 22 O 1.42899 * 109.47452 * 66.37757 * 21 20 10 23 23 C 1.42906 * 114.00241 * 179.97438 * 22 21 20 24 24 N 1.36453 * 107.05604 * 359.73041 * 9 8 7 25 25 C 1.46501 * 127.13482 * 180.02562 * 24 9 8 26 26 C 1.52998 * 109.47095 * 269.96883 * 25 24 9 27 27 C 1.52999 * 117.50204 * 243.62601 * 26 25 24 28 28 C 1.52992 * 117.50110 * 175.00045 * 26 25 24 29 29 H 1.07991 * 120.00603 * 179.97438 * 1 2 3 30 30 H 1.08004 * 119.99716 * 359.97438 * 1 2 3 31 31 H 1.08004 * 119.99716 * 180.02562 * 2 1 3 32 32 H 0.96697 * 113.99674 * 300.00120 * 5 3 2 33 33 H 1.09002 * 109.47142 * 182.04312 * 11 10 9 34 34 H 1.09004 * 109.46481 * 302.03899 * 11 10 9 35 35 H 0.96996 * 119.99980 * 179.97438 * 15 14 12 36 36 H 1.09006 * 109.46942 * 282.42402 * 20 10 9 37 37 H 1.08995 * 109.47054 * 42.42456 * 20 10 9 38 38 H 1.08998 * 109.47359 * 186.38089 * 21 20 10 39 39 H 1.09004 * 109.47251 * 306.37969 * 21 20 10 40 40 H 1.08996 * 109.47278 * 180.02562 * 23 22 21 41 41 H 1.08998 * 109.47391 * 300.00539 * 23 22 21 42 42 H 1.09002 * 109.46725 * 60.00368 * 23 22 21 43 43 H 1.08995 * 109.47459 * 29.97105 * 25 24 9 44 44 H 1.09004 * 109.46622 * 149.97308 * 25 24 9 45 45 H 1.08999 * 115.54715 * 29.33349 * 26 25 24 46 46 H 1.08995 * 117.49873 * 359.97438 * 27 26 25 47 47 H 1.09005 * 117.49923 * 145.02059 * 27 26 25 48 48 H 1.08998 * 117.50423 * 214.97950 * 28 26 25 49 49 H 1.08999 * 117.50204 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3553 2.1336 -0.0005 5 8 2.8851 1.3807 -1.1668 6 6 2.9300 1.3848 1.2305 7 7 4.0424 0.7380 1.4348 8 7 4.5239 1.0425 2.5870 9 6 3.7330 1.8996 3.1883 10 7 3.9203 2.4514 4.4456 11 6 2.7605 2.1965 5.3105 12 6 2.5924 0.7111 5.5005 13 1 3.2669 0.0243 5.0108 14 6 1.5775 0.2287 6.2995 15 7 1.4304 -1.0676 6.4649 16 14 0.4105 1.4166 7.1459 17 1 -0.7508 1.6854 6.2602 18 1 -0.0660 0.8196 8.4193 19 1 1.1205 2.6893 7.4312 20 6 5.1561 1.9503 5.0618 21 6 5.5624 2.8726 6.2129 22 8 4.5908 2.7873 7.2573 23 6 4.8775 3.6144 8.3868 24 7 2.6913 2.1449 2.3418 25 6 1.5535 3.0378 2.5750 26 6 0.4212 2.2568 3.2449 27 6 -0.8895 2.1082 2.4697 28 6 -0.8178 3.0421 3.6795 29 1 -0.5401 -0.9352 -0.0004 30 1 -0.5400 0.9354 0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 3.5405 0.6727 -1.2329 33 1 2.9182 2.6712 6.2790 34 1 1.8639 2.6073 4.8463 35 1 0.7167 -1.4069 7.0273 36 1 4.9889 0.9435 5.4446 37 1 5.9508 1.9282 4.3161 38 1 6.5360 2.5676 6.5965 39 1 5.6193 3.8998 5.8527 40 1 4.0940 3.4924 9.1347 41 1 5.8368 3.3245 8.8155 42 1 4.9205 4.6571 8.0720 43 1 1.8622 3.8580 3.2232 44 1 1.2050 3.4384 1.6231 45 1 0.7331 1.4214 3.8717 46 1 -0.9452 2.5672 1.4827 47 1 -1.4401 1.1747 2.5863 48 1 -1.3214 2.7230 4.5920 49 1 -0.8265 4.1150 3.4879 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345796414.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:35 Heat of formation + Delta-G solvation = 35.230248 kcal Electronic energy + Delta-G solvation = -31878.456819 eV Core-core repulsion = 27843.937967 eV Total energy + Delta-G solvation = -4034.518852 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.92497 -39.65465 -38.82355 -38.55267 -37.58472 -35.24799 -34.62242 -34.24622 -31.50673 -30.99628 -29.23360 -28.23089 -26.98993 -26.96724 -24.35066 -23.70739 -23.27663 -22.51609 -21.91314 -20.99090 -20.96066 -19.27255 -18.76932 -17.81505 -17.60774 -17.25339 -17.04081 -16.95137 -16.42745 -16.14359 -15.93991 -15.66712 -15.61024 -15.33648 -15.02549 -14.42379 -14.39929 -13.95331 -13.76658 -13.64106 -13.41920 -13.16440 -12.82218 -12.77404 -12.72518 -12.56125 -12.46669 -12.41441 -12.22234 -12.07027 -11.77723 -11.74161 -11.42694 -11.42294 -11.30596 -10.92941 -10.90475 -10.75715 -10.65360 -10.47043 -10.38227 -9.04971 -8.28375 -6.31381 0.76608 1.27708 1.29858 1.34508 1.43067 1.45838 1.94747 2.33153 2.81668 2.93241 3.01822 3.10792 3.32170 3.44353 3.65194 3.71564 3.80358 3.91803 4.01456 4.08757 4.14504 4.18339 4.28213 4.30231 4.46059 4.48215 4.56010 4.58205 4.62138 4.67117 4.75260 4.85618 4.88749 4.96833 4.99743 5.07742 5.09397 5.13256 5.26416 5.27432 5.33821 5.47377 5.59230 5.66751 5.73557 5.87173 6.21243 6.37116 6.45825 6.52598 6.70955 7.30610 7.84949 8.88706 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010944 B = 0.005590 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.816010 B = 5007.839622 C = 6287.666401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.208 4.208 3 C 0.248 3.752 4 H 0.137 0.863 5 O -0.547 6.547 6 C 0.139 3.861 7 N -0.314 5.314 8 N -0.376 5.376 9 C 0.396 3.604 10 N -0.440 5.440 11 C 0.150 3.850 12 C -0.520 4.520 13 H 0.016 0.984 14 C 0.022 3.978 15 N -0.950 5.950 16 Si 0.929 3.071 17 H -0.245 1.245 18 H -0.297 1.297 19 H -0.240 1.240 20 C 0.073 3.927 21 C 0.077 3.923 22 O -0.405 6.405 23 C 0.023 3.977 24 N -0.465 5.465 25 C 0.142 3.858 26 C -0.208 4.208 27 C -0.155 4.155 28 C -0.165 4.165 29 H 0.111 0.889 30 H 0.124 0.876 31 H 0.101 0.899 32 H 0.393 0.607 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.262 0.738 36 H 0.033 0.967 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.104 0.896 44 H 0.129 0.871 45 H 0.086 0.914 46 H 0.130 0.870 47 H 0.086 0.914 48 H 0.080 0.920 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.850 13.889 -7.593 16.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.228 4.228 3 C 0.186 3.814 4 H 0.155 0.845 5 O -0.353 6.353 6 C -0.131 4.131 7 N -0.154 5.154 8 N -0.220 5.220 9 C 0.038 3.962 10 N -0.163 5.163 11 C 0.025 3.975 12 C -0.559 4.559 13 H 0.034 0.966 14 C -0.176 4.176 15 N -0.591 5.591 16 Si 0.752 3.248 17 H -0.169 1.169 18 H -0.224 1.224 19 H -0.163 1.163 20 C -0.054 4.054 21 C 0.001 3.999 22 O -0.324 6.324 23 C -0.073 4.073 24 N -0.160 5.160 25 C 0.020 3.980 26 C -0.227 4.227 27 C -0.192 4.192 28 C -0.202 4.202 29 H 0.130 0.870 30 H 0.142 0.858 31 H 0.119 0.881 32 H 0.243 0.757 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.122 0.878 44 H 0.147 0.853 45 H 0.104 0.896 46 H 0.148 0.852 47 H 0.105 0.895 48 H 0.099 0.901 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.230 13.803 -7.927 16.242 hybrid contribution -0.675 -1.125 1.649 2.108 sum -3.904 12.678 -6.278 14.676 Atomic orbital electron populations 1.24148 0.94794 1.03863 0.95027 1.23275 0.97398 0.97594 1.04488 1.19135 0.87717 0.97588 0.76959 0.84547 1.86516 1.52177 1.55989 1.40596 1.25916 0.98349 0.95481 0.93335 1.73561 1.09351 1.21345 1.11111 1.74420 1.28565 1.14825 1.04236 1.22864 0.86873 0.93357 0.93090 1.59352 1.06923 1.51946 0.98080 1.20827 0.87946 0.94548 0.94165 1.21484 1.13740 0.91959 1.28741 0.96592 1.25698 0.99161 0.96289 0.96429 1.70109 1.33721 1.14775 1.40454 0.86043 0.80118 0.80402 0.78213 1.16950 1.22397 1.16325 1.22021 0.90012 0.97663 0.95743 1.22515 0.91534 0.99211 0.86689 1.88125 1.48299 1.67268 1.28737 1.22882 1.01557 0.94459 0.88386 1.46067 1.19933 1.36605 1.13362 1.21713 0.82389 0.90518 1.03371 1.22727 0.90202 1.03893 1.05885 1.23193 0.97391 1.01367 0.97222 1.23123 0.98440 0.99486 0.99163 0.87050 0.85767 0.88101 0.75657 0.90458 0.92959 0.92941 0.94837 0.88964 0.90672 0.91055 0.90146 0.92934 0.92563 0.87781 0.85333 0.89556 0.85180 0.89548 0.90136 0.85336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 14.19 67.78 0.96 -1.96 16 2 C -0.21 -5.42 9.10 25.64 0.23 -5.19 16 3 C 0.25 6.59 3.75 29.10 0.11 6.70 16 4 H 0.14 2.81 6.60 -2.39 -0.02 2.79 16 5 O -0.55 -14.27 13.32 -148.98 -1.98 -16.25 16 6 C 0.14 5.04 6.91 137.64 0.95 5.99 16 7 N -0.31 -13.74 12.10 -49.54 -0.60 -14.34 16 8 N -0.38 -18.00 10.99 -58.01 -0.64 -18.64 16 9 C 0.40 17.34 6.14 260.11 1.60 18.94 16 10 N -0.44 -18.52 4.72 -710.36 -3.35 -21.87 16 11 C 0.15 6.81 3.50 85.55 0.30 7.10 16 12 C -0.52 -29.26 7.01 25.60 0.18 -29.08 16 13 H 0.02 1.07 6.87 -2.91 -0.02 1.05 16 14 C 0.02 1.24 5.34 84.66 0.45 1.70 16 15 N -0.95 -59.84 13.96 21.45 0.30 -59.54 16 16 Si 0.93 42.04 27.44 68.60 1.88 43.92 16 17 H -0.25 -9.96 5.77 99.48 0.57 -9.38 16 18 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 19 H -0.24 -10.04 6.51 99.48 0.65 -9.39 16 20 C 0.07 2.99 4.96 86.30 0.43 3.42 16 21 C 0.08 2.48 6.24 71.98 0.45 2.92 16 22 O -0.40 -14.77 7.70 -148.98 -1.15 -15.92 16 23 C 0.02 0.60 11.01 113.37 1.25 1.85 16 24 N -0.46 -17.04 2.81 -514.86 -1.44 -18.48 16 25 C 0.14 3.89 5.36 86.38 0.46 4.35 16 26 C -0.21 -6.30 4.29 -10.80 -0.05 -6.35 16 27 C -0.16 -3.39 9.56 30.59 0.29 -3.09 16 28 C -0.16 -3.90 10.25 30.59 0.31 -3.59 16 29 H 0.11 2.12 8.06 -2.92 -0.02 2.10 16 30 H 0.12 1.90 6.84 -2.91 -0.02 1.88 16 31 H 0.10 2.94 8.06 -2.91 -0.02 2.92 16 32 H 0.39 9.30 8.97 -74.06 -0.66 8.63 16 33 H 0.08 3.56 4.25 -2.39 -0.01 3.55 16 34 H 0.05 2.21 3.10 -2.38 -0.01 2.20 16 35 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 36 H 0.03 1.68 6.31 -2.38 -0.02 1.66 16 37 H 0.09 3.62 7.43 -2.39 -0.02 3.60 16 38 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.10 2.77 7.60 -2.39 -0.02 2.75 16 44 H 0.13 2.39 6.84 -2.39 -0.02 2.37 16 45 H 0.09 3.73 5.96 -2.39 -0.01 3.72 16 46 H 0.13 1.82 7.55 -2.39 -0.02 1.80 16 47 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 48 H 0.08 2.23 6.81 -2.39 -0.02 2.21 16 49 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -79.93 386.57 1.07 -78.86 By element: Atomic # 1 Polarization: 38.43 SS G_CDS: 0.12 Total: 38.56 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: 7.93 Total: 3.71 kcal Atomic # 7 Polarization: -127.14 SS G_CDS: -5.73 Total: -132.88 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -3.13 Total: -32.17 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 1.88 Total: 43.92 kcal Total: -79.93 1.07 -78.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345796414.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.091 kcal (2) G-P(sol) polarization free energy of solvation -79.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds