Wall clock time and date at job start Tue Mar 31 2020 19:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 120.00160 * 2 1 4 4 H 1.09001 * 109.47488 * 245.00756 * 3 2 1 5 5 O 1.42899 * 109.46865 * 5.00705 * 3 2 1 6 6 C 1.50700 * 109.46962 * 125.00499 * 3 2 1 7 7 N 1.30297 * 126.34595 * 284.69299 * 6 3 2 8 8 N 1.28527 * 110.05472 * 179.82486 * 7 6 3 9 9 C 1.31222 * 109.85546 * 0.44870 * 8 7 6 10 10 N 1.38588 * 126.47216 * 179.70039 * 9 8 7 11 11 C 1.46852 * 110.99954 * 63.16579 * 10 9 8 12 12 C 1.53034 * 109.51767 * 174.16027 * 11 10 9 13 13 C 1.53124 * 109.27915 * 59.18210 * 12 11 10 14 14 C 1.50696 * 109.52406 * 182.43479 * 13 12 11 15 15 H 1.07996 * 120.00340 * 119.68088 * 14 13 12 16 16 C 1.37880 * 120.00253 * 299.68491 * 14 13 12 17 17 N 1.31516 * 119.99786 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00215 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47313 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.47194 * 120.00031 * 18 16 14 21 21 H 1.48496 * 109.47496 * 240.00074 * 18 16 14 22 22 C 1.53116 * 109.16210 * 302.34323 * 13 12 11 23 23 C 1.46853 * 110.99706 * 298.95862 * 10 9 8 24 24 N 1.36453 * 107.05842 * 359.72868 * 9 8 7 25 25 C 1.46498 * 127.14107 * 180.02562 * 24 9 8 26 26 C 1.52996 * 109.47531 * 269.65459 * 25 24 9 27 27 O 1.42898 * 109.47209 * 179.97438 * 26 25 24 28 28 C 1.42904 * 113.99907 * 180.02562 * 27 26 25 29 29 H 1.08006 * 120.00015 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.00344 * 179.72532 * 1 2 3 31 31 H 1.07998 * 120.00330 * 180.02562 * 2 1 3 32 32 H 0.96702 * 114.00134 * 59.99910 * 5 3 2 33 33 H 1.08993 * 109.46229 * 294.17575 * 11 10 9 34 34 H 1.08999 * 109.45918 * 54.14713 * 11 10 9 35 35 H 1.08998 * 109.50881 * 299.23714 * 12 11 10 36 36 H 1.09007 * 109.50034 * 179.11900 * 12 11 10 37 37 H 1.09004 * 109.52004 * 62.24814 * 13 12 11 38 38 H 0.97000 * 120.00167 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.49951 * 297.71476 * 22 13 12 40 40 H 1.08989 * 109.50646 * 177.59432 * 22 13 12 41 41 H 1.08996 * 109.45974 * 305.85702 * 23 10 9 42 42 H 1.08997 * 109.46233 * 65.82159 * 23 10 9 43 43 H 1.09004 * 109.46637 * 29.65580 * 25 24 9 44 44 H 1.08996 * 109.46850 * 149.64792 * 25 24 9 45 45 H 1.09001 * 109.47104 * 300.00260 * 26 25 24 46 46 H 1.09003 * 109.47276 * 59.99577 * 26 25 24 47 47 H 1.08997 * 109.46728 * 180.02562 * 28 27 26 48 48 H 1.09000 * 109.46855 * 299.99585 * 28 27 26 49 49 H 1.08997 * 109.46958 * 59.99840 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 2.6212 1.4027 -0.9314 5 8 1.1394 2.3887 0.1176 6 6 3.0205 1.3326 1.1638 7 7 2.7094 1.5196 2.4152 8 7 3.7677 1.4790 3.1433 9 6 4.8206 1.2716 2.3881 10 7 6.1351 1.1733 2.8162 11 6 6.3142 0.0177 3.7045 12 6 7.7986 -0.1444 4.0393 13 6 8.3054 1.1300 4.7204 14 6 9.7807 0.9997 4.9988 15 1 10.4769 1.6988 4.5597 16 6 10.2418 -0.0122 5.8141 17 7 9.3940 -0.8639 6.3484 18 14 12.0705 -0.1741 6.1585 19 1 12.8059 0.8997 5.4435 20 1 12.3120 -0.0510 7.6187 21 1 12.5475 -1.4993 5.6879 22 6 8.0630 2.3251 3.7945 23 6 6.5709 2.4157 3.4666 24 7 4.3770 1.1716 1.1016 25 6 5.1860 0.9395 -0.0975 26 6 5.6223 2.2825 -0.6864 27 8 6.4119 2.0559 -1.8556 28 6 6.8733 3.2525 -2.4862 29 1 -0.5400 0.9354 0.0004 30 1 -0.5401 -0.9353 -0.0045 31 1 1.8500 -0.9353 -0.0004 32 1 0.6075 2.3662 0.9249 33 1 5.7497 0.1751 4.6234 34 1 5.9538 -0.8824 3.2065 35 1 8.3621 -0.3156 3.1222 36 1 7.9295 -0.9928 4.7112 37 1 7.7689 1.2802 5.6573 38 1 9.7183 -1.5756 6.9222 39 1 8.6306 2.1928 2.8734 40 1 8.3826 3.2410 4.2912 41 1 6.3969 3.2571 2.7960 42 1 6.0051 2.5618 4.3867 43 1 6.0674 0.3549 0.1665 44 1 4.5957 0.3943 -0.8340 45 1 4.7409 2.8670 -0.9503 46 1 6.2125 2.8276 0.0502 47 1 7.4641 2.9952 -3.3653 48 1 6.0181 3.8572 -2.7878 49 1 7.4893 3.8175 -1.7866 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355673162.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:09 Heat of formation + Delta-G solvation = 14.342263 kcal Electronic energy + Delta-G solvation = -30247.154677 eV Core-core repulsion = 26211.730054 eV Total energy + Delta-G solvation = -4035.424623 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.04708 -38.59561 -38.31984 -37.97244 -35.32101 -34.07222 -33.09343 -31.61974 -30.25895 -30.02548 -29.53440 -26.82971 -26.54366 -25.66980 -23.81455 -22.74987 -22.25296 -21.40992 -20.71546 -20.20708 -18.65200 -17.88212 -17.22493 -16.79242 -16.43761 -16.39749 -16.21049 -15.91373 -15.84703 -15.09919 -14.92592 -14.53870 -14.15119 -13.79525 -13.45581 -13.34543 -12.91772 -12.75690 -12.68015 -12.53422 -12.46322 -11.94408 -11.83335 -11.70696 -11.63838 -11.54068 -11.08639 -10.96517 -10.90231 -10.63335 -10.51771 -10.34738 -10.26598 -10.13279 -10.03885 -9.86410 -9.59382 -9.14852 -8.92621 -8.81764 -8.37781 -8.34996 -6.01648 -4.07174 1.56156 1.79740 2.14633 2.81306 3.28272 3.36840 3.40217 3.42124 3.88689 3.99681 4.14961 4.33965 4.42121 4.45270 4.60224 4.69402 4.88143 4.93511 5.03840 5.07727 5.16739 5.28563 5.28721 5.36984 5.39374 5.47492 5.53995 5.66744 5.78111 5.91171 6.00390 6.11182 6.13971 6.17428 6.27518 6.38488 6.46938 6.51659 6.71466 6.73455 6.87821 7.00665 7.15065 7.29808 7.34347 7.55961 7.72062 7.95530 8.06263 8.41218 8.72000 8.96465 9.57773 11.04792 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013959 B = 0.003057 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.325213 B = 9155.946695 C =10408.391432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.192 4.192 3 C 0.234 3.766 4 H 0.121 0.879 5 O -0.541 6.541 6 C 0.136 3.864 7 N -0.275 5.275 8 N -0.309 5.309 9 C 0.372 3.628 10 N -0.466 5.466 11 C 0.070 3.930 12 C -0.103 4.103 13 C 0.047 3.953 14 C -0.510 4.510 15 H 0.056 0.944 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.890 3.110 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.105 4.105 23 C 0.073 3.927 24 N -0.459 5.459 25 C 0.113 3.887 26 C 0.051 3.949 27 O -0.385 6.385 28 C 0.034 3.966 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.118 0.882 32 H 0.389 0.611 33 H 0.045 0.955 34 H 0.056 0.944 35 H 0.046 0.954 36 H 0.100 0.900 37 H 0.026 0.974 38 H 0.260 0.740 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.117 0.883 44 H 0.099 0.901 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.090 0.910 48 H 0.042 0.958 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.180 3.938 -17.472 22.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.211 4.211 3 C 0.172 3.828 4 H 0.138 0.862 5 O -0.347 6.347 6 C -0.132 4.132 7 N -0.117 5.117 8 N -0.152 5.152 9 C 0.017 3.983 10 N -0.193 5.193 11 C -0.056 4.056 12 C -0.141 4.141 13 C 0.028 3.972 14 C -0.549 4.549 15 H 0.074 0.926 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.143 4.143 23 C -0.053 4.053 24 N -0.154 5.154 25 C -0.011 4.011 26 C -0.027 4.027 27 O -0.303 6.303 28 C -0.063 4.063 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.136 0.864 32 H 0.239 0.761 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.118 0.882 37 H 0.044 0.956 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.135 0.865 44 H 0.118 0.882 45 H 0.072 0.928 46 H 0.082 0.918 47 H 0.108 0.892 48 H 0.060 0.940 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.402 3.953 -17.177 22.142 hybrid contribution 1.179 -0.260 0.347 1.256 sum -12.223 3.693 -16.830 21.126 Atomic orbital electron populations 1.23875 0.95674 1.02798 0.97540 1.23357 0.96909 0.97924 1.02929 1.18890 0.86100 0.85930 0.91917 0.86153 1.86560 1.53530 1.47506 1.47073 1.25402 0.82618 1.07078 0.98093 1.73883 1.21647 1.17133 0.99004 1.74739 0.94876 1.20412 1.25219 1.22850 0.93214 1.00675 0.81605 1.59015 1.09556 1.07212 1.43565 1.22415 1.01490 0.88689 0.93051 1.21748 0.88692 1.03428 1.00274 1.18714 0.96259 0.89201 0.93018 1.21191 0.92093 1.12894 1.28686 0.92602 1.24971 0.97512 0.95830 0.95685 1.69868 1.33636 1.16824 1.32627 0.86569 0.85751 0.77892 0.77964 1.19845 1.21109 1.21086 1.21727 0.91076 1.00810 1.00676 1.22210 0.98745 0.87693 0.96674 1.46200 1.07065 1.54066 1.08077 1.21568 0.97167 0.97823 0.84495 1.22703 0.95255 0.96486 0.88257 1.87796 1.70258 1.31141 1.41139 1.22787 0.98656 0.87156 0.97687 0.87350 0.87701 0.86367 0.76060 0.93629 0.92579 0.93540 0.88152 0.95583 0.93040 0.92285 0.92277 0.92551 0.93428 0.86467 0.88233 0.92814 0.91820 0.89150 0.93963 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 13.91 29.02 0.40 -0.80 16 2 C -0.19 -1.66 9.49 -36.02 -0.34 -2.01 16 3 C 0.23 2.29 3.86 -29.03 -0.11 2.18 16 4 H 0.12 0.99 7.29 -51.93 -0.38 0.61 16 5 O -0.54 -5.40 12.17 -35.23 -0.43 -5.83 16 6 C 0.14 1.82 6.92 -154.01 -1.07 0.75 16 7 N -0.28 -4.56 12.09 32.99 0.40 -4.16 16 8 N -0.31 -5.78 12.19 30.32 0.37 -5.41 16 9 C 0.37 6.34 6.41 -318.86 -2.05 4.30 16 10 N -0.47 -8.31 4.67 -174.55 -0.82 -9.12 16 11 C 0.07 1.36 5.39 -3.83 -0.02 1.34 16 12 C -0.10 -2.32 5.12 -26.65 -0.14 -2.46 16 13 C 0.05 1.11 2.16 -91.65 -0.20 0.91 16 14 C -0.51 -13.51 8.56 -34.44 -0.29 -13.81 16 15 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.64 5.31 -17.82 -0.09 1.55 16 17 N -0.89 -24.77 11.37 55.43 0.63 -24.14 16 18 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C -0.10 -2.09 5.32 -26.65 -0.14 -2.23 16 23 C 0.07 1.33 5.37 -3.83 -0.02 1.31 16 24 N -0.46 -6.28 2.81 -114.08 -0.32 -6.60 16 25 C 0.11 1.22 6.18 -4.05 -0.03 1.20 16 26 C 0.05 0.54 6.26 37.16 0.23 0.77 16 27 O -0.39 -4.10 10.70 -35.23 -0.38 -4.48 16 28 C 0.03 0.27 11.01 101.05 1.11 1.38 16 29 H 0.11 0.73 6.56 -52.48 -0.34 0.39 16 30 H 0.10 0.65 8.06 -52.48 -0.42 0.23 16 31 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 32 H 0.39 3.29 8.20 45.56 0.37 3.67 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 1.04 8.10 -51.93 -0.42 0.62 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.10 2.54 6.17 -51.92 -0.32 2.22 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.06 1.14 8.14 -51.94 -0.42 0.71 16 41 H 0.06 0.93 8.10 -51.93 -0.42 0.50 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.12 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.10 0.82 7.53 -51.93 -0.39 0.43 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 49 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 399.98 15.07 6.03 6.03 Total: -1.00 -30.71 399.98 -9.65 -40.36 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -7.36 Total: 3.14 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -2.75 Total: -5.62 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 0.26 Total: -49.44 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -0.81 Total: -10.31 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.71 -9.65 -40.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355673162.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.703 kcal (2) G-P(sol) polarization free energy of solvation -30.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds