Wall clock time and date at job start Tue Mar 31 2020 19:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 120.00160 * 2 1 4 4 H 1.09001 * 109.47488 * 245.00756 * 3 2 1 5 5 O 1.42899 * 109.46865 * 5.00705 * 3 2 1 6 6 C 1.50700 * 109.46962 * 125.00499 * 3 2 1 7 7 N 1.30297 * 126.34595 * 284.69299 * 6 3 2 8 8 N 1.28527 * 110.05472 * 179.82486 * 7 6 3 9 9 C 1.31222 * 109.85546 * 0.44870 * 8 7 6 10 10 N 1.38588 * 126.47216 * 179.70039 * 9 8 7 11 11 C 1.46852 * 110.99954 * 63.16579 * 10 9 8 12 12 C 1.53034 * 109.51767 * 174.16027 * 11 10 9 13 13 C 1.53124 * 109.27915 * 59.18210 * 12 11 10 14 14 C 1.50696 * 109.52406 * 182.43479 * 13 12 11 15 15 H 1.07996 * 120.00340 * 119.68088 * 14 13 12 16 16 C 1.37880 * 120.00253 * 299.68491 * 14 13 12 17 17 N 1.31516 * 119.99786 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00215 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47313 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.47194 * 120.00031 * 18 16 14 21 21 H 1.48496 * 109.47496 * 240.00074 * 18 16 14 22 22 C 1.53116 * 109.16210 * 302.34323 * 13 12 11 23 23 C 1.46853 * 110.99706 * 298.95862 * 10 9 8 24 24 N 1.36453 * 107.05842 * 359.72868 * 9 8 7 25 25 C 1.46498 * 127.14107 * 180.02562 * 24 9 8 26 26 C 1.52996 * 109.47531 * 269.65459 * 25 24 9 27 27 O 1.42898 * 109.47209 * 179.97438 * 26 25 24 28 28 C 1.42904 * 113.99907 * 180.02562 * 27 26 25 29 29 H 1.08006 * 120.00015 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.00344 * 179.72532 * 1 2 3 31 31 H 1.07998 * 120.00330 * 180.02562 * 2 1 3 32 32 H 0.96702 * 114.00134 * 59.99910 * 5 3 2 33 33 H 1.08993 * 109.46229 * 294.17575 * 11 10 9 34 34 H 1.08999 * 109.45918 * 54.14713 * 11 10 9 35 35 H 1.08998 * 109.50881 * 299.23714 * 12 11 10 36 36 H 1.09007 * 109.50034 * 179.11900 * 12 11 10 37 37 H 1.09004 * 109.52004 * 62.24814 * 13 12 11 38 38 H 0.97000 * 120.00167 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.49951 * 297.71476 * 22 13 12 40 40 H 1.08989 * 109.50646 * 177.59432 * 22 13 12 41 41 H 1.08996 * 109.45974 * 305.85702 * 23 10 9 42 42 H 1.08997 * 109.46233 * 65.82159 * 23 10 9 43 43 H 1.09004 * 109.46637 * 29.65580 * 25 24 9 44 44 H 1.08996 * 109.46850 * 149.64792 * 25 24 9 45 45 H 1.09001 * 109.47104 * 300.00260 * 26 25 24 46 46 H 1.09003 * 109.47276 * 59.99577 * 26 25 24 47 47 H 1.08997 * 109.46728 * 180.02562 * 28 27 26 48 48 H 1.09000 * 109.46855 * 299.99585 * 28 27 26 49 49 H 1.08997 * 109.46958 * 59.99840 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 2.6212 1.4027 -0.9314 5 8 1.1394 2.3887 0.1176 6 6 3.0205 1.3326 1.1638 7 7 2.7094 1.5196 2.4152 8 7 3.7677 1.4790 3.1433 9 6 4.8206 1.2716 2.3881 10 7 6.1351 1.1733 2.8162 11 6 6.3142 0.0177 3.7045 12 6 7.7986 -0.1444 4.0393 13 6 8.3054 1.1300 4.7204 14 6 9.7807 0.9997 4.9988 15 1 10.4769 1.6988 4.5597 16 6 10.2418 -0.0122 5.8141 17 7 9.3940 -0.8639 6.3484 18 14 12.0705 -0.1741 6.1585 19 1 12.8059 0.8997 5.4435 20 1 12.3120 -0.0510 7.6187 21 1 12.5475 -1.4993 5.6879 22 6 8.0630 2.3251 3.7945 23 6 6.5709 2.4157 3.4666 24 7 4.3770 1.1716 1.1016 25 6 5.1860 0.9395 -0.0975 26 6 5.6223 2.2825 -0.6864 27 8 6.4119 2.0559 -1.8556 28 6 6.8733 3.2525 -2.4862 29 1 -0.5400 0.9354 0.0004 30 1 -0.5401 -0.9353 -0.0045 31 1 1.8500 -0.9353 -0.0004 32 1 0.6075 2.3662 0.9249 33 1 5.7497 0.1751 4.6234 34 1 5.9538 -0.8824 3.2065 35 1 8.3621 -0.3156 3.1222 36 1 7.9295 -0.9928 4.7112 37 1 7.7689 1.2802 5.6573 38 1 9.7183 -1.5756 6.9222 39 1 8.6306 2.1928 2.8734 40 1 8.3826 3.2410 4.2912 41 1 6.3969 3.2571 2.7960 42 1 6.0051 2.5618 4.3867 43 1 6.0674 0.3549 0.1665 44 1 4.5957 0.3943 -0.8340 45 1 4.7409 2.8670 -0.9503 46 1 6.2125 2.8276 0.0502 47 1 7.4641 2.9952 -3.3653 48 1 6.0181 3.8572 -2.7878 49 1 7.4893 3.8175 -1.7866 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355673162.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:08 Heat of formation + Delta-G solvation = -4.879346 kcal Electronic energy + Delta-G solvation = -30247.988189 eV Core-core repulsion = 26211.730054 eV Total energy + Delta-G solvation = -4036.258135 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.23823 -40.03298 -39.10428 -38.88276 -36.38678 -35.83099 -33.80514 -33.37952 -31.71614 -31.19435 -30.74790 -28.02269 -27.27115 -27.23854 -24.80045 -24.33746 -23.91292 -22.55581 -21.95915 -20.91990 -20.35369 -18.90325 -18.44591 -18.05027 -17.83330 -17.29445 -17.18541 -16.85459 -16.78787 -16.50673 -16.03776 -15.80234 -15.55760 -15.09107 -14.64917 -14.51654 -14.44755 -14.23519 -13.96434 -13.56182 -13.44016 -13.28271 -13.00946 -12.82652 -12.80135 -12.70171 -12.42189 -12.38755 -12.32954 -12.14692 -12.01057 -11.81541 -11.68878 -11.43952 -11.29425 -10.94370 -10.77963 -10.75736 -10.50828 -10.41152 -10.17304 -9.89009 -8.07404 -6.20232 0.43958 0.89755 1.29947 1.41872 1.44595 1.55066 1.59627 2.42983 2.45919 2.84785 3.09445 3.20558 3.30080 3.50339 3.72173 3.81049 3.81888 3.87559 4.06769 4.11027 4.13174 4.30019 4.35269 4.35576 4.45156 4.45986 4.52423 4.53630 4.60027 4.65203 4.69135 4.84308 4.85115 4.90018 4.97765 4.99512 5.14937 5.19602 5.37674 5.51927 5.59608 5.61080 5.68571 5.71116 5.97860 6.00985 6.12181 6.19319 6.38518 6.44892 6.90922 7.47955 7.50383 8.97844 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013959 B = 0.003057 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.325213 B = 9155.946695 C =10408.391432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.209 4.209 3 C 0.237 3.763 4 H 0.143 0.857 5 O -0.545 6.545 6 C 0.160 3.840 7 N -0.305 5.305 8 N -0.343 5.343 9 C 0.355 3.645 10 N -0.456 5.456 11 C 0.085 3.915 12 C -0.090 4.090 13 C 0.043 3.957 14 C -0.527 4.527 15 H 0.055 0.945 16 C 0.013 3.987 17 N -0.918 5.918 18 Si 0.952 3.048 19 H -0.266 1.266 20 H -0.284 1.284 21 H -0.281 1.281 22 C -0.093 4.093 23 C 0.082 3.918 24 N -0.450 5.450 25 C 0.109 3.891 26 C 0.058 3.942 27 O -0.399 6.399 28 C 0.027 3.973 29 H 0.115 0.885 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.395 0.605 33 H 0.024 0.976 34 H 0.068 0.932 35 H 0.044 0.956 36 H 0.070 0.930 37 H -0.010 1.010 38 H 0.260 0.740 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.031 0.969 43 H 0.107 0.893 44 H 0.132 0.868 45 H 0.066 0.934 46 H 0.046 0.954 47 H 0.105 0.895 48 H 0.055 0.945 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.763 4.339 -20.141 24.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.229 4.229 3 C 0.175 3.825 4 H 0.160 0.840 5 O -0.351 6.351 6 C -0.109 4.109 7 N -0.146 5.146 8 N -0.186 5.186 9 C -0.002 4.002 10 N -0.183 5.183 11 C -0.042 4.042 12 C -0.128 4.128 13 C 0.025 3.975 14 C -0.565 4.565 15 H 0.074 0.926 16 C -0.186 4.186 17 N -0.557 5.557 18 Si 0.779 3.221 19 H -0.190 1.190 20 H -0.211 1.211 21 H -0.207 1.207 22 C -0.131 4.131 23 C -0.045 4.045 24 N -0.145 5.145 25 C -0.013 4.013 26 C -0.020 4.020 27 O -0.317 6.317 28 C -0.069 4.069 29 H 0.133 0.867 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.246 0.754 33 H 0.043 0.957 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.088 0.912 37 H 0.008 0.992 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.049 0.951 43 H 0.125 0.875 44 H 0.150 0.850 45 H 0.084 0.916 46 H 0.064 0.936 47 H 0.123 0.877 48 H 0.074 0.926 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -13.990 4.371 -19.870 24.691 hybrid contribution 1.255 -0.364 1.115 1.718 sum -12.735 4.007 -18.755 23.022 Atomic orbital electron populations 1.24099 0.95391 1.03838 0.95369 1.23319 0.97323 0.97343 1.04866 1.19179 0.85664 0.86627 0.91017 0.83992 1.86556 1.53445 1.47710 1.47424 1.26220 0.82784 1.03723 0.98193 1.73818 1.21250 1.19184 1.00354 1.74644 0.95856 1.21244 1.26875 1.22630 0.92339 1.02371 0.82874 1.58901 1.10619 1.06272 1.42485 1.22091 0.99007 0.90248 0.92843 1.21456 0.90633 1.01601 0.99129 1.18675 0.94764 0.91564 0.92530 1.21541 0.93385 1.12855 1.28750 0.92625 1.25724 1.01563 0.95637 0.95649 1.70012 1.35363 1.17260 1.33107 0.85589 0.80923 0.77988 0.77634 1.19047 1.21059 1.20701 1.21549 0.92548 0.99197 0.99817 1.22080 0.97051 0.88725 0.96627 1.46285 1.07344 1.53131 1.07723 1.21808 0.97148 0.98437 0.83918 1.22572 0.95426 0.95949 0.88009 1.87773 1.70385 1.32583 1.40982 1.22982 0.99401 0.86581 0.97958 0.86675 0.86346 0.86085 0.75404 0.95721 0.91328 0.93711 0.91202 0.99187 0.93101 0.91788 0.91688 0.90229 0.95081 0.87490 0.84970 0.91599 0.93585 0.87651 0.92589 0.93829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 13.91 67.78 0.94 -0.87 16 2 C -0.21 -3.07 9.49 25.65 0.24 -2.83 16 3 C 0.24 3.99 3.86 29.10 0.11 4.10 16 4 H 0.14 1.77 7.29 -2.39 -0.02 1.76 16 5 O -0.55 -9.49 12.17 -148.98 -1.81 -11.30 16 6 C 0.16 3.99 6.92 137.64 0.95 4.94 16 7 N -0.31 -9.91 12.09 -49.54 -0.60 -10.51 16 8 N -0.34 -12.87 12.19 -58.00 -0.71 -13.58 16 9 C 0.36 11.94 6.41 260.11 1.67 13.60 16 10 N -0.46 -16.27 4.67 -706.15 -3.30 -19.57 16 11 C 0.08 3.42 5.39 86.32 0.47 3.89 16 12 C -0.09 -4.17 5.12 30.65 0.16 -4.02 16 13 C 0.04 2.13 2.16 -11.46 -0.02 2.11 16 14 C -0.53 -28.41 8.56 25.60 0.22 -28.19 16 15 H 0.06 2.93 7.74 -2.91 -0.02 2.91 16 16 C 0.01 0.70 5.31 84.66 0.45 1.14 16 17 N -0.92 -52.52 11.37 21.45 0.24 -52.27 16 18 Si 0.95 43.14 29.54 68.60 2.03 45.16 16 19 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 C -0.09 -3.73 5.32 30.64 0.16 -3.57 16 23 C 0.08 2.97 5.37 86.32 0.46 3.43 16 24 N -0.45 -11.61 2.81 -514.85 -1.45 -13.06 16 25 C 0.11 2.12 6.18 86.38 0.53 2.65 16 26 C 0.06 1.10 6.26 71.98 0.45 1.55 16 27 O -0.40 -7.56 10.70 -148.98 -1.59 -9.16 16 28 C 0.03 0.36 11.01 113.37 1.25 1.61 16 29 H 0.12 1.23 6.56 -2.91 -0.02 1.21 16 30 H 0.12 1.12 8.06 -2.91 -0.02 1.10 16 31 H 0.12 1.71 8.06 -2.91 -0.02 1.69 16 32 H 0.39 5.89 8.20 -74.06 -0.61 5.29 16 33 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.07 2.57 8.10 -2.39 -0.02 2.55 16 35 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.07 3.69 6.17 -2.38 -0.01 3.68 16 37 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 38 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 39 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.08 2.53 8.10 -2.39 -0.02 2.52 16 42 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.13 1.71 7.53 -2.39 -0.02 1.69 16 45 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -67.57 399.98 1.19 -66.38 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.33 Total: 18.35 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: 8.04 Total: -0.46 kcal Atomic # 7 Polarization: -103.18 SS G_CDS: -5.81 Total: -108.98 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -3.41 Total: -20.46 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -67.57 1.19 -66.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355673162.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.500 kcal (2) G-P(sol) polarization free energy of solvation -67.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds