Wall clock time and date at job start Tue Mar 31 2020 19:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 120.00121 * 2 1 4 4 H 1.09002 * 109.46878 * 0.02562 * 3 2 1 5 5 O 1.42898 * 109.47077 * 240.00159 * 3 2 1 6 6 C 1.50696 * 109.47088 * 120.00033 * 3 2 1 7 7 N 1.30289 * 126.35109 * 74.68654 * 6 3 2 8 8 N 1.28527 * 110.05549 * 179.81914 * 7 6 3 9 9 C 1.31215 * 109.86252 * 0.45432 * 8 7 6 10 10 N 1.38576 * 126.47788 * 179.71957 * 9 8 7 11 11 C 1.46856 * 110.99496 * 63.13436 * 10 9 8 12 12 C 1.53037 * 109.52208 * 174.15796 * 11 10 9 13 13 C 1.53120 * 109.27473 * 59.18353 * 12 11 10 14 14 C 1.50703 * 109.51906 * 182.43725 * 13 12 11 15 15 H 1.08003 * 119.99650 * 119.68174 * 14 13 12 16 16 C 1.37867 * 120.00254 * 299.68111 * 14 13 12 17 17 N 1.31518 * 120.00091 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00431 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46652 * 59.99974 * 18 16 14 20 20 H 1.48497 * 109.47330 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46904 * 300.00355 * 18 16 14 22 22 C 1.53120 * 109.16052 * 302.33990 * 13 12 11 23 23 C 1.46841 * 111.00633 * 298.92809 * 10 9 8 24 24 N 1.36461 * 107.05027 * 359.72952 * 9 8 7 25 25 C 1.46494 * 127.13625 * 179.97438 * 24 9 8 26 26 C 1.52998 * 109.47660 * 272.08641 * 25 24 9 27 27 O 1.42892 * 109.47604 * 179.97438 * 26 25 24 28 28 C 1.42897 * 114.00305 * 179.97438 * 27 26 25 29 29 H 1.07999 * 120.00009 * 180.02562 * 1 2 3 30 30 H 1.08004 * 119.99675 * 0.02562 * 1 2 3 31 31 H 1.07995 * 119.99928 * 179.97438 * 2 1 3 32 32 H 0.96702 * 113.99803 * 299.99453 * 5 3 2 33 33 H 1.08996 * 109.46199 * 294.17925 * 11 10 9 34 34 H 1.09006 * 109.45841 * 54.14442 * 11 10 9 35 35 H 1.08996 * 109.50593 * 299.24121 * 12 11 10 36 36 H 1.09003 * 109.50114 * 179.11980 * 12 11 10 37 37 H 1.09001 * 109.52708 * 62.24847 * 13 12 11 38 38 H 0.97002 * 120.00095 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.50424 * 297.71654 * 22 13 12 40 40 H 1.08996 * 109.50398 * 177.60049 * 22 13 12 41 41 H 1.09008 * 109.45889 * 305.85586 * 23 10 9 42 42 H 1.09001 * 109.46628 * 65.81635 * 23 10 9 43 43 H 1.09004 * 109.47487 * 32.08592 * 25 24 9 44 44 H 1.09001 * 109.47158 * 152.08109 * 25 24 9 45 45 H 1.09003 * 109.47126 * 300.00308 * 26 25 24 46 46 H 1.09009 * 109.47043 * 59.99674 * 26 25 24 47 47 H 1.09003 * 109.47671 * 180.02562 * 28 27 26 48 48 H 1.09004 * 109.47198 * 300.00256 * 28 27 26 49 49 H 1.08996 * 109.47412 * 59.99895 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 8 2.8850 1.3808 -1.1668 6 6 2.9299 1.3849 1.2304 7 7 4.0423 0.7382 1.4349 8 7 4.5238 1.0427 2.5870 9 6 3.7329 1.8998 3.1884 10 7 3.9200 2.4516 4.4457 11 6 5.1413 3.2662 4.4864 12 6 5.2388 3.9744 5.8395 13 6 5.2633 2.9280 6.9571 14 6 5.2989 3.6210 8.2949 15 1 4.5033 3.4605 9.0075 16 6 6.3470 4.4596 8.6093 17 7 7.3156 4.6554 7.7414 18 14 6.3908 5.3191 10.2673 19 1 6.4064 4.3037 11.3508 20 1 7.6122 6.1589 10.3575 21 1 5.1882 6.1783 10.4113 22 6 4.0040 2.0622 6.8626 23 6 3.9423 1.4094 5.4799 24 7 2.6911 2.1451 2.3417 25 6 1.5529 3.0372 2.5753 26 6 0.4409 2.2685 3.2919 27 8 -0.6691 3.1388 3.5202 28 6 -1.7686 2.5159 4.1874 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8499 -0.9353 0.0004 32 1 3.5405 0.6729 -1.2329 33 1 6.0110 2.6237 4.3492 34 1 5.1092 4.0089 3.6891 35 1 4.3762 4.6276 5.9714 36 1 6.1532 4.5666 5.8752 37 1 6.1469 2.2991 6.8480 38 1 8.0529 5.2458 7.9624 39 1 3.1220 2.6853 7.0106 40 1 4.0362 1.2882 7.6294 41 1 3.0393 0.8034 5.4042 42 1 4.8176 0.7756 5.3381 43 1 1.8703 3.8772 3.1932 44 1 1.1806 3.4088 1.6206 45 1 0.1234 1.4285 2.6740 46 1 0.8132 1.8969 4.2467 47 1 -2.5702 3.2420 4.3228 48 1 -2.1321 1.6815 3.5875 49 1 -1.4424 2.1487 5.1604 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355673245.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:13 Heat of formation + Delta-G solvation = 13.398989 kcal Electronic energy + Delta-G solvation = -30378.032394 eV Core-core repulsion = 26342.566867 eV Total energy + Delta-G solvation = -4035.465527 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.04866 -38.53030 -38.33951 -37.77029 -35.33367 -34.09180 -33.65210 -31.59922 -30.24505 -30.02308 -29.44453 -26.74545 -26.36923 -25.62062 -23.83181 -22.76950 -22.25987 -21.56045 -20.72607 -20.46631 -18.64830 -17.88634 -17.06593 -16.78705 -16.66547 -16.39330 -16.02680 -16.00591 -15.61949 -15.02310 -14.85230 -14.54868 -14.15596 -13.90701 -13.48376 -13.42199 -12.99109 -12.82013 -12.68803 -12.56880 -12.46469 -12.11303 -11.82958 -11.67732 -11.64228 -11.56779 -11.07586 -10.92865 -10.76031 -10.63254 -10.53699 -10.35411 -10.26800 -10.15701 -10.10272 -9.99312 -9.58606 -9.14429 -8.93499 -8.82311 -8.37867 -8.34095 -6.00954 -4.06852 1.47144 1.82908 2.05377 2.81902 3.30932 3.36196 3.38260 3.40616 3.93150 4.08767 4.14246 4.31576 4.40062 4.42450 4.51620 4.59685 4.86205 4.91758 5.01595 5.06243 5.16306 5.26294 5.29108 5.35818 5.36272 5.38367 5.50308 5.67493 5.80369 5.90640 5.99704 6.08079 6.10860 6.15077 6.17573 6.39293 6.46483 6.50715 6.70811 6.72374 6.87658 7.00550 7.19816 7.29970 7.34733 7.55984 7.72047 7.95863 8.06621 8.41380 8.71372 8.96254 9.58034 11.05408 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015125 B = 0.003087 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.831504 B = 9067.498838 C =10275.591604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.184 4.184 3 C 0.235 3.765 4 H 0.115 0.885 5 O -0.539 6.539 6 C 0.135 3.865 7 N -0.277 5.277 8 N -0.309 5.309 9 C 0.372 3.628 10 N -0.466 5.466 11 C 0.069 3.931 12 C -0.103 4.103 13 C 0.047 3.953 14 C -0.513 4.513 15 H 0.055 0.945 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.105 4.105 23 C 0.073 3.927 24 N -0.458 5.458 25 C 0.113 3.887 26 C 0.052 3.948 27 O -0.385 6.385 28 C 0.034 3.966 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.122 0.878 32 H 0.390 0.610 33 H 0.046 0.954 34 H 0.056 0.944 35 H 0.046 0.954 36 H 0.101 0.899 37 H 0.026 0.974 38 H 0.261 0.739 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.047 0.953 43 H 0.116 0.884 44 H 0.099 0.901 45 H 0.053 0.947 46 H 0.064 0.936 47 H 0.090 0.910 48 H 0.041 0.959 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.983 -6.559 -14.084 23.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.203 4.203 3 C 0.172 3.828 4 H 0.132 0.868 5 O -0.344 6.344 6 C -0.133 4.133 7 N -0.119 5.119 8 N -0.152 5.152 9 C 0.016 3.984 10 N -0.193 5.193 11 C -0.057 4.057 12 C -0.141 4.141 13 C 0.029 3.971 14 C -0.551 4.551 15 H 0.073 0.927 16 C -0.139 4.139 17 N -0.530 5.530 18 Si 0.719 3.281 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.143 4.143 23 C -0.053 4.053 24 N -0.153 5.153 25 C -0.010 4.010 26 C -0.026 4.026 27 O -0.303 6.303 28 C -0.063 4.063 29 H 0.125 0.875 30 H 0.119 0.881 31 H 0.140 0.860 32 H 0.239 0.761 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.119 0.881 37 H 0.044 0.956 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.134 0.866 44 H 0.117 0.883 45 H 0.071 0.929 46 H 0.082 0.918 47 H 0.108 0.892 48 H 0.060 0.940 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -16.392 -6.326 -14.413 22.726 hybrid contribution -0.139 0.107 1.320 1.332 sum -16.532 -6.218 -13.093 21.986 Atomic orbital electron populations 1.23944 0.95516 1.02581 0.98033 1.23453 0.96619 0.98482 1.01739 1.19055 0.88365 0.96627 0.78709 0.86755 1.86602 1.51829 1.55568 1.40360 1.25460 0.99190 0.96380 0.92251 1.73875 1.06823 1.20450 1.10713 1.74724 1.23766 1.14587 1.02127 1.22843 0.86557 0.96162 0.92795 1.59007 1.41286 1.22604 0.96448 1.22423 0.86997 0.94958 1.01282 1.21749 1.03047 0.99280 0.90068 1.18703 0.91721 0.92581 0.94106 1.21114 1.06942 1.26798 1.00222 0.92714 1.24963 0.95514 0.96618 0.96826 1.69849 1.10753 1.37680 1.34672 0.86684 0.77310 0.79609 0.84530 1.20350 1.21348 1.20322 1.21730 1.01573 0.99225 0.91776 1.22206 1.00162 0.91382 0.91560 1.46184 1.19679 1.35095 1.14327 1.21559 0.83891 0.92544 1.03049 1.22699 0.87007 0.92579 1.00339 1.87799 1.25730 1.37423 1.79323 1.22783 0.88827 0.98540 0.96125 0.87534 0.88113 0.86011 0.76053 0.93607 0.92525 0.93539 0.88134 0.95586 0.92905 0.92297 0.92292 0.92615 0.93436 0.86550 0.88272 0.92906 0.91776 0.89151 0.94028 0.93541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 14.32 29.02 0.42 -0.65 16 2 C -0.18 -1.52 9.10 -36.02 -0.33 -1.85 16 3 C 0.23 2.32 3.75 -29.03 -0.11 2.21 16 4 H 0.11 0.96 6.55 -51.93 -0.34 0.62 16 5 O -0.54 -5.66 13.31 -35.23 -0.47 -6.13 16 6 C 0.13 1.81 6.91 -154.02 -1.06 0.75 16 7 N -0.28 -4.56 12.10 32.99 0.40 -4.16 16 8 N -0.31 -5.77 12.19 30.31 0.37 -5.40 16 9 C 0.37 6.36 6.41 -318.87 -2.05 4.31 16 10 N -0.47 -8.33 4.67 -174.55 -0.82 -9.15 16 11 C 0.07 1.37 5.39 -3.83 -0.02 1.35 16 12 C -0.10 -2.33 5.12 -26.65 -0.14 -2.47 16 13 C 0.05 1.13 2.16 -91.65 -0.20 0.93 16 14 C -0.51 -13.59 8.56 -34.44 -0.29 -13.88 16 15 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 16 C 0.06 1.67 5.31 -17.82 -0.09 1.58 16 17 N -0.89 -24.85 11.37 55.43 0.63 -24.22 16 18 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 C -0.11 -2.09 5.32 -26.65 -0.14 -2.23 16 23 C 0.07 1.32 5.37 -3.84 -0.02 1.30 16 24 N -0.46 -6.33 2.81 -114.09 -0.32 -6.65 16 25 C 0.11 1.24 6.38 -4.05 -0.03 1.22 16 26 C 0.05 0.53 6.26 37.16 0.23 0.76 16 27 O -0.38 -3.99 10.70 -35.23 -0.38 -4.37 16 28 C 0.03 0.26 11.01 101.05 1.11 1.37 16 29 H 0.11 0.56 8.06 -52.49 -0.42 0.14 16 30 H 0.10 0.56 7.83 -52.48 -0.41 0.15 16 31 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.39 3.31 8.97 45.56 0.41 3.72 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 1.07 8.10 -51.93 -0.42 0.65 16 35 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.10 2.55 6.17 -51.93 -0.32 2.23 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.06 0.90 8.10 -51.92 -0.42 0.48 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.10 0.86 7.03 -51.93 -0.37 0.49 16 45 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 47 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 49 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 402.03 15.07 6.06 6.06 Total: -1.00 -30.87 402.03 -9.59 -40.46 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -7.33 Total: 2.98 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -2.72 Total: -5.29 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: 0.26 Total: -49.57 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -0.85 Total: -10.50 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.87 -9.59 -40.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355673245.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.864 kcal (2) G-P(sol) polarization free energy of solvation -30.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds