Wall clock time and date at job start Tue Mar 31 2020 19:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 120.00121 * 2 1 4 4 H 1.09002 * 109.46878 * 0.02562 * 3 2 1 5 5 O 1.42898 * 109.47077 * 240.00159 * 3 2 1 6 6 C 1.50696 * 109.47088 * 120.00033 * 3 2 1 7 7 N 1.30289 * 126.35109 * 74.68654 * 6 3 2 8 8 N 1.28527 * 110.05549 * 179.81914 * 7 6 3 9 9 C 1.31215 * 109.86252 * 0.45432 * 8 7 6 10 10 N 1.38576 * 126.47788 * 179.71957 * 9 8 7 11 11 C 1.46856 * 110.99496 * 63.13436 * 10 9 8 12 12 C 1.53037 * 109.52208 * 174.15796 * 11 10 9 13 13 C 1.53120 * 109.27473 * 59.18353 * 12 11 10 14 14 C 1.50703 * 109.51906 * 182.43725 * 13 12 11 15 15 H 1.08003 * 119.99650 * 119.68174 * 14 13 12 16 16 C 1.37867 * 120.00254 * 299.68111 * 14 13 12 17 17 N 1.31518 * 120.00091 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00431 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46652 * 59.99974 * 18 16 14 20 20 H 1.48497 * 109.47330 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46904 * 300.00355 * 18 16 14 22 22 C 1.53120 * 109.16052 * 302.33990 * 13 12 11 23 23 C 1.46841 * 111.00633 * 298.92809 * 10 9 8 24 24 N 1.36461 * 107.05027 * 359.72952 * 9 8 7 25 25 C 1.46494 * 127.13625 * 179.97438 * 24 9 8 26 26 C 1.52998 * 109.47660 * 272.08641 * 25 24 9 27 27 O 1.42892 * 109.47604 * 179.97438 * 26 25 24 28 28 C 1.42897 * 114.00305 * 179.97438 * 27 26 25 29 29 H 1.07999 * 120.00009 * 180.02562 * 1 2 3 30 30 H 1.08004 * 119.99675 * 0.02562 * 1 2 3 31 31 H 1.07995 * 119.99928 * 179.97438 * 2 1 3 32 32 H 0.96702 * 113.99803 * 299.99453 * 5 3 2 33 33 H 1.08996 * 109.46199 * 294.17925 * 11 10 9 34 34 H 1.09006 * 109.45841 * 54.14442 * 11 10 9 35 35 H 1.08996 * 109.50593 * 299.24121 * 12 11 10 36 36 H 1.09003 * 109.50114 * 179.11980 * 12 11 10 37 37 H 1.09001 * 109.52708 * 62.24847 * 13 12 11 38 38 H 0.97002 * 120.00095 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.50424 * 297.71654 * 22 13 12 40 40 H 1.08996 * 109.50398 * 177.60049 * 22 13 12 41 41 H 1.09008 * 109.45889 * 305.85586 * 23 10 9 42 42 H 1.09001 * 109.46628 * 65.81635 * 23 10 9 43 43 H 1.09004 * 109.47487 * 32.08592 * 25 24 9 44 44 H 1.09001 * 109.47158 * 152.08109 * 25 24 9 45 45 H 1.09003 * 109.47126 * 300.00308 * 26 25 24 46 46 H 1.09009 * 109.47043 * 59.99674 * 26 25 24 47 47 H 1.09003 * 109.47671 * 180.02562 * 28 27 26 48 48 H 1.09004 * 109.47198 * 300.00256 * 28 27 26 49 49 H 1.08996 * 109.47412 * 59.99895 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 8 2.8850 1.3808 -1.1668 6 6 2.9299 1.3849 1.2304 7 7 4.0423 0.7382 1.4349 8 7 4.5238 1.0427 2.5870 9 6 3.7329 1.8998 3.1884 10 7 3.9200 2.4516 4.4457 11 6 5.1413 3.2662 4.4864 12 6 5.2388 3.9744 5.8395 13 6 5.2633 2.9280 6.9571 14 6 5.2989 3.6210 8.2949 15 1 4.5033 3.4605 9.0075 16 6 6.3470 4.4596 8.6093 17 7 7.3156 4.6554 7.7414 18 14 6.3908 5.3191 10.2673 19 1 6.4064 4.3037 11.3508 20 1 7.6122 6.1589 10.3575 21 1 5.1882 6.1783 10.4113 22 6 4.0040 2.0622 6.8626 23 6 3.9423 1.4094 5.4799 24 7 2.6911 2.1451 2.3417 25 6 1.5529 3.0372 2.5753 26 6 0.4409 2.2685 3.2919 27 8 -0.6691 3.1388 3.5202 28 6 -1.7686 2.5159 4.1874 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8499 -0.9353 0.0004 32 1 3.5405 0.6729 -1.2329 33 1 6.0110 2.6237 4.3492 34 1 5.1092 4.0089 3.6891 35 1 4.3762 4.6276 5.9714 36 1 6.1532 4.5666 5.8752 37 1 6.1469 2.2991 6.8480 38 1 8.0529 5.2458 7.9624 39 1 3.1220 2.6853 7.0106 40 1 4.0362 1.2882 7.6294 41 1 3.0393 0.8034 5.4042 42 1 4.8176 0.7756 5.3381 43 1 1.8703 3.8772 3.1932 44 1 1.1806 3.4088 1.6206 45 1 0.1234 1.4285 2.6740 46 1 0.8132 1.8969 4.2467 47 1 -2.5702 3.2420 4.3228 48 1 -2.1321 1.6815 3.5875 49 1 -1.4424 2.1487 5.1604 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355673245.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:12 Heat of formation + Delta-G solvation = -6.326709 kcal Electronic energy + Delta-G solvation = -30378.887764 eV Core-core repulsion = 26342.566867 eV Total energy + Delta-G solvation = -4036.320897 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.24059 -40.02516 -39.09295 -38.63913 -36.39383 -35.82624 -34.33798 -33.38824 -31.71725 -31.15911 -30.68181 -27.90916 -27.25616 -26.99577 -24.81149 -24.33431 -23.91749 -22.65525 -21.91287 -21.25367 -20.34791 -18.92512 -18.42933 -17.87308 -17.79238 -17.58432 -17.06993 -16.85843 -16.61306 -16.45798 -15.97682 -15.61987 -15.55050 -15.12585 -14.68817 -14.54776 -14.42342 -14.24965 -14.05674 -13.64236 -13.45304 -13.28882 -13.02931 -12.85559 -12.77258 -12.75996 -12.48578 -12.39225 -12.31233 -12.15548 -12.01481 -11.83134 -11.49897 -11.42973 -11.30809 -10.94204 -10.78682 -10.77603 -10.61509 -10.40282 -10.16931 -9.89441 -8.07066 -6.20343 0.42448 0.93028 1.18130 1.44422 1.44896 1.52508 1.61164 2.43201 2.46100 2.84382 3.19098 3.20748 3.31884 3.54145 3.65190 3.77545 3.81817 3.83791 4.06229 4.10659 4.11380 4.23917 4.35259 4.38018 4.45099 4.46912 4.53120 4.54762 4.60699 4.65054 4.71012 4.84151 4.86882 4.89664 4.97007 4.97600 5.14800 5.19443 5.37717 5.51362 5.57327 5.59885 5.63467 5.70576 5.97766 6.02684 6.11841 6.19155 6.38229 6.48899 6.90599 7.47918 7.49812 8.97811 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015125 B = 0.003087 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.831504 B = 9067.498838 C =10275.591604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.207 4.207 3 C 0.237 3.763 4 H 0.137 0.863 5 O -0.548 6.548 6 C 0.158 3.842 7 N -0.307 5.307 8 N -0.342 5.342 9 C 0.354 3.646 10 N -0.456 5.456 11 C 0.085 3.915 12 C -0.090 4.090 13 C 0.044 3.956 14 C -0.530 4.530 15 H 0.056 0.944 16 C 0.013 3.987 17 N -0.918 5.918 18 Si 0.952 3.048 19 H -0.273 1.273 20 H -0.288 1.288 21 H -0.270 1.270 22 C -0.093 4.093 23 C 0.082 3.918 24 N -0.450 5.450 25 C 0.108 3.892 26 C 0.060 3.940 27 O -0.399 6.399 28 C 0.027 3.973 29 H 0.122 0.878 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.396 0.604 33 H 0.025 0.975 34 H 0.066 0.934 35 H 0.044 0.956 36 H 0.069 0.931 37 H -0.010 1.010 38 H 0.260 0.740 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.031 0.969 43 H 0.104 0.896 44 H 0.130 0.870 45 H 0.070 0.930 46 H 0.045 0.955 47 H 0.104 0.896 48 H 0.059 0.941 49 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.188 -6.629 -14.947 25.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.226 4.226 3 C 0.175 3.825 4 H 0.154 0.846 5 O -0.354 6.354 6 C -0.111 4.111 7 N -0.147 5.147 8 N -0.186 5.186 9 C -0.003 4.003 10 N -0.183 5.183 11 C -0.042 4.042 12 C -0.128 4.128 13 C 0.025 3.975 14 C -0.568 4.568 15 H 0.075 0.925 16 C -0.185 4.185 17 N -0.558 5.558 18 Si 0.778 3.222 19 H -0.198 1.198 20 H -0.213 1.213 21 H -0.195 1.195 22 C -0.131 4.131 23 C -0.045 4.045 24 N -0.144 5.144 25 C -0.014 4.014 26 C -0.017 4.017 27 O -0.317 6.317 28 C -0.069 4.069 29 H 0.140 0.860 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.247 0.753 33 H 0.043 0.957 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.008 0.992 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.049 0.951 43 H 0.122 0.878 44 H 0.148 0.852 45 H 0.088 0.912 46 H 0.064 0.936 47 H 0.122 0.878 48 H 0.077 0.923 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -19.624 -6.407 -15.282 25.684 hybrid contribution 0.764 0.094 1.503 1.689 sum -18.860 -6.313 -13.779 24.195 Atomic orbital electron populations 1.24219 0.94796 1.04095 0.94634 1.23294 0.97213 0.97321 1.04797 1.19379 0.87848 0.98500 0.76730 0.84611 1.86580 1.52261 1.56208 1.40387 1.26303 0.98138 0.94044 0.92583 1.73812 1.08547 1.22117 1.10269 1.74630 1.25137 1.15528 1.03290 1.22626 0.87890 0.97029 0.92731 1.58893 1.39641 1.22459 0.97272 1.22092 0.87424 0.94922 0.99781 1.21457 1.01260 0.98729 0.91366 1.18665 0.92251 0.92815 0.93739 1.21496 1.07012 1.26960 1.01326 0.92542 1.25730 0.95271 0.97407 1.00137 1.70003 1.11225 1.38237 1.36319 0.85698 0.77375 0.78584 0.80504 1.19792 1.21325 1.19489 1.21553 0.99427 0.98831 0.93315 1.22083 1.00616 0.91190 0.90569 1.46274 1.19557 1.35011 1.13588 1.21802 0.83179 0.91759 1.04679 1.22554 0.86854 0.92762 0.99579 1.87777 1.26194 1.38105 1.79663 1.22982 0.88313 0.99568 0.96051 0.86035 0.86529 0.86632 0.75303 0.95703 0.91528 0.93750 0.91233 0.99199 0.93087 0.91772 0.91611 0.90084 0.95099 0.87768 0.85235 0.91201 0.93629 0.87784 0.92271 0.93968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 14.32 67.78 0.97 -0.30 16 2 C -0.21 -2.85 9.10 25.65 0.23 -2.62 16 3 C 0.24 4.07 3.75 29.10 0.11 4.18 16 4 H 0.14 1.73 6.55 -2.39 -0.02 1.71 16 5 O -0.55 -10.49 13.31 -148.98 -1.98 -12.48 16 6 C 0.16 4.00 6.91 137.64 0.95 4.95 16 7 N -0.31 -10.01 12.10 -49.54 -0.60 -10.61 16 8 N -0.34 -12.93 12.19 -58.00 -0.71 -13.63 16 9 C 0.35 12.01 6.41 260.11 1.67 13.67 16 10 N -0.46 -16.36 4.67 -706.14 -3.30 -19.65 16 11 C 0.08 3.46 5.39 86.32 0.47 3.93 16 12 C -0.09 -4.21 5.12 30.65 0.16 -4.05 16 13 C 0.04 2.17 2.16 -11.46 -0.02 2.14 16 14 C -0.53 -28.58 8.56 25.60 0.22 -28.36 16 15 H 0.06 2.95 7.74 -2.91 -0.02 2.93 16 16 C 0.01 0.72 5.31 84.65 0.45 1.17 16 17 N -0.92 -52.83 11.37 21.44 0.24 -52.59 16 18 Si 0.95 43.14 29.54 68.60 2.03 45.17 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 20 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 C -0.09 -3.72 5.32 30.65 0.16 -3.56 16 23 C 0.08 2.96 5.37 86.33 0.46 3.42 16 24 N -0.45 -11.74 2.81 -514.87 -1.45 -13.19 16 25 C 0.11 2.12 6.38 86.38 0.55 2.67 16 26 C 0.06 1.08 6.26 71.98 0.45 1.53 16 27 O -0.40 -7.18 10.70 -148.98 -1.59 -8.77 16 28 C 0.03 0.33 11.01 113.37 1.25 1.58 16 29 H 0.12 0.77 8.06 -2.91 -0.02 0.75 16 30 H 0.12 0.71 7.83 -2.91 -0.02 0.68 16 31 H 0.12 1.73 8.06 -2.91 -0.02 1.71 16 32 H 0.40 6.33 8.97 -74.06 -0.66 5.67 16 33 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.07 2.56 8.10 -2.38 -0.02 2.54 16 35 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.07 3.71 6.17 -2.39 -0.01 3.69 16 37 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 38 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 39 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.08 2.53 8.10 -2.38 -0.02 2.51 16 42 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.10 2.36 8.14 -2.38 -0.02 2.34 16 44 H 0.13 1.75 7.03 -2.39 -0.02 1.74 16 45 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 47 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 49 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -68.53 402.03 0.99 -67.53 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.28 Total: 17.86 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: 8.08 Total: 0.36 kcal Atomic # 7 Polarization: -103.87 SS G_CDS: -5.81 Total: -109.67 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -3.58 Total: -21.25 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -68.53 0.99 -67.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355673245.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.207 kcal (2) G-P(sol) polarization free energy of solvation -68.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds