Wall clock time and date at job start Tue Mar 31 2020 19:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50693 * 120.00109 * 2 1 4 4 H 1.08997 * 109.47273 * 244.99620 * 3 2 1 5 5 O 1.42898 * 109.47193 * 4.99659 * 3 2 1 6 6 C 1.50700 * 109.47214 * 124.99685 * 3 2 1 7 7 N 1.30293 * 126.34898 * 285.02867 * 6 3 2 8 8 N 1.28526 * 110.05587 * 179.97438 * 7 6 3 9 9 C 1.31217 * 109.85927 * 359.97438 * 8 7 6 10 10 N 1.38581 * 126.47272 * 179.97438 * 9 8 7 11 11 C 1.46849 * 110.99861 * 235.46365 * 10 9 8 12 12 C 1.53035 * 109.52423 * 174.15962 * 11 10 9 13 13 C 1.53119 * 109.27758 * 59.17705 * 12 11 10 14 14 C 1.53118 * 109.16007 * 302.34284 * 13 12 11 15 15 H 1.08997 * 109.50853 * 297.71107 * 14 13 12 16 16 C 1.50703 * 109.50507 * 177.63539 * 14 13 12 17 17 H 1.07996 * 120.00457 * 245.52239 * 16 14 13 18 18 C 1.37885 * 119.99888 * 65.51434 * 16 14 13 19 19 N 1.31511 * 119.99582 * 7.78441 * 18 16 14 20 20 Si 1.86797 * 119.99998 * 187.78444 * 18 16 14 21 21 H 1.48500 * 109.47035 * 94.98644 * 20 18 16 22 22 H 1.48500 * 109.47175 * 214.98529 * 20 18 16 23 23 H 1.48500 * 109.47346 * 334.98967 * 20 18 16 24 24 C 1.46842 * 111.00239 * 111.25072 * 10 9 8 25 25 N 1.36452 * 107.05432 * 359.97438 * 9 8 7 26 26 C 1.46502 * 127.13580 * 179.97438 * 25 9 8 27 27 C 1.52999 * 109.47077 * 264.49794 * 26 25 9 28 28 O 1.42901 * 109.47048 * 182.42970 * 27 26 25 29 29 C 1.42897 * 114.00030 * 179.97438 * 28 27 26 30 30 H 1.08003 * 119.99950 * 0.02562 * 1 2 3 31 31 H 1.08003 * 120.00188 * 179.97438 * 1 2 3 32 32 H 1.07999 * 119.99577 * 180.02562 * 2 1 3 33 33 H 0.96705 * 114.00201 * 59.99917 * 5 3 2 34 34 H 1.09003 * 109.46102 * 294.17059 * 11 10 9 35 35 H 1.08993 * 109.46701 * 54.15225 * 11 10 9 36 36 H 1.08996 * 109.50355 * 179.11414 * 12 11 10 37 37 H 1.09000 * 109.50082 * 299.23782 * 12 11 10 38 38 H 1.08998 * 109.52628 * 62.25101 * 13 12 11 39 39 H 1.09001 * 109.52394 * 182.44008 * 13 12 11 40 40 H 0.97007 * 119.99605 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.46088 * 305.85040 * 24 10 9 42 42 H 1.08998 * 109.46445 * 65.81964 * 24 10 9 43 43 H 1.08994 * 109.47099 * 24.49663 * 26 25 9 44 44 H 1.08993 * 109.47134 * 144.49786 * 26 25 9 45 45 H 1.08997 * 109.47336 * 302.42495 * 27 26 25 46 46 H 1.08998 * 109.47607 * 62.43014 * 27 26 25 47 47 H 1.08996 * 109.47145 * 299.99899 * 29 28 27 48 48 H 1.09000 * 109.47068 * 59.99935 * 29 28 27 49 49 H 1.09007 * 109.46953 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 2.6214 1.4025 -0.9313 5 8 1.1394 2.3886 0.1173 6 6 3.0204 1.3326 1.1639 7 7 2.7085 1.5137 2.4159 8 7 3.7674 1.4784 3.1435 9 6 4.8203 1.2706 2.3885 10 7 6.1346 1.1719 2.8168 11 6 6.9906 2.1369 2.1151 12 6 8.3987 2.1011 2.7134 13 6 8.9710 0.6877 2.5748 14 6 8.0358 -0.3038 3.2727 15 1 7.9846 -0.0693 4.3359 16 6 8.5616 -1.7044 3.0913 17 1 7.9982 -2.4222 2.5136 18 6 9.7621 -2.0696 3.6628 19 7 10.3729 -1.2496 4.4899 20 14 10.5209 -3.7288 3.2623 21 1 11.5002 -3.5715 2.1571 22 1 11.2122 -4.2601 4.4644 23 1 9.4535 -4.6740 2.8469 24 6 6.6382 -0.1983 2.6581 25 7 4.3767 1.1702 1.1020 26 6 5.1859 0.9385 -0.0970 27 6 5.5134 2.2789 -0.7581 28 8 6.2545 2.0497 -1.9582 29 6 6.6125 3.2435 -2.6573 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8499 -0.9353 -0.0004 33 1 0.6074 2.3663 0.9246 34 1 7.0388 1.8778 1.0574 35 1 6.5748 3.1384 2.2251 36 1 9.0379 2.8062 2.1820 37 1 8.3531 2.3735 3.7678 38 1 9.0531 0.4297 1.5190 39 1 9.9567 0.6467 3.0384 40 1 11.2173 -1.5066 4.8923 41 1 5.9664 -0.8928 3.1625 42 1 6.6879 -0.4465 1.5979 43 1 6.1116 0.4349 0.1811 44 1 4.6290 0.3150 -0.7963 45 1 4.5875 2.8019 -0.9973 46 1 6.1073 2.8857 -0.0747 47 1 5.7091 3.7861 -2.9359 48 1 7.2290 3.8706 -2.0133 49 1 7.1727 2.9843 -3.5557 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355675724.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:01 Heat of formation + Delta-G solvation = 19.523426 kcal Electronic energy + Delta-G solvation = -30861.014068 eV Core-core repulsion = 26825.814117 eV Total energy + Delta-G solvation = -4035.199951 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.05531 -38.90012 -38.34527 -37.96328 -35.28874 -33.86692 -33.03975 -32.09304 -30.40875 -30.07786 -29.58455 -26.87889 -26.54941 -25.16982 -24.09404 -23.50857 -21.82709 -21.47228 -20.83052 -20.15891 -19.06568 -17.93101 -17.22572 -16.88873 -16.45211 -16.26567 -16.24911 -15.92772 -15.76382 -15.17318 -14.88640 -14.53520 -14.21668 -14.00213 -13.71823 -13.31159 -12.88534 -12.81074 -12.70283 -12.68470 -12.58531 -12.05115 -11.98937 -11.80459 -11.68091 -11.48373 -11.05134 -10.96243 -10.92010 -10.85075 -10.45960 -10.37691 -10.22983 -10.15666 -10.00446 -9.80900 -9.71288 -9.39185 -9.02237 -8.82436 -8.49193 -8.32706 -6.10531 -4.14230 1.60092 1.86803 2.20820 2.89716 3.25075 3.33152 3.35019 3.41438 3.69543 3.97993 4.13554 4.25038 4.38281 4.45569 4.51860 4.69460 4.79923 4.94557 4.96872 5.01628 5.07656 5.14189 5.19504 5.25058 5.34447 5.36782 5.51219 5.58808 5.68431 5.77027 5.83776 5.98395 6.07971 6.18482 6.22212 6.30904 6.38474 6.42981 6.51566 6.65099 6.70435 6.87634 7.09877 7.18663 7.20574 7.50885 7.61364 7.84622 7.94110 8.28980 8.85128 8.88856 9.49979 10.98359 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011825 B = 0.003553 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.316219 B = 7878.156169 C = 8660.850280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.191 4.191 3 C 0.232 3.768 4 H 0.119 0.881 5 O -0.542 6.542 6 C 0.137 3.863 7 N -0.277 5.277 8 N -0.269 5.269 9 C 0.372 3.628 10 N -0.442 5.442 11 C 0.054 3.946 12 C -0.117 4.117 13 C -0.108 4.108 14 C 0.056 3.944 15 H 0.049 0.951 16 C -0.521 4.521 17 H 0.055 0.945 18 C 0.068 3.932 19 N -0.883 5.883 20 Si 0.889 3.111 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.069 3.931 25 N -0.490 5.490 26 C 0.096 3.904 27 C 0.043 3.957 28 O -0.384 6.384 29 C 0.033 3.967 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.118 0.882 33 H 0.389 0.611 34 H 0.041 0.959 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.036 0.964 39 H 0.081 0.919 40 H 0.262 0.738 41 H 0.071 0.929 42 H 0.029 0.971 43 H 0.115 0.885 44 H 0.104 0.896 45 H 0.058 0.942 46 H 0.065 0.935 47 H 0.043 0.957 48 H 0.045 0.955 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.199 7.998 -14.228 20.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.211 4.211 3 C 0.170 3.830 4 H 0.137 0.863 5 O -0.348 6.348 6 C -0.132 4.132 7 N -0.118 5.118 8 N -0.110 5.110 9 C 0.018 3.982 10 N -0.167 5.167 11 C -0.073 4.073 12 C -0.155 4.155 13 C -0.147 4.147 14 C 0.037 3.963 15 H 0.067 0.933 16 C -0.559 4.559 17 H 0.073 0.927 18 C -0.134 4.134 19 N -0.521 5.521 20 Si 0.717 3.283 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.057 4.057 25 N -0.190 5.190 26 C -0.028 4.028 27 C -0.035 4.035 28 O -0.302 6.302 29 C -0.064 4.064 30 H 0.126 0.874 31 H 0.123 0.877 32 H 0.136 0.864 33 H 0.239 0.761 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.055 0.945 39 H 0.100 0.900 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.047 0.953 43 H 0.133 0.867 44 H 0.123 0.877 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.062 0.938 48 H 0.064 0.936 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.530 8.365 -12.987 19.891 hybrid contribution 1.140 -1.258 -1.505 2.268 sum -11.390 7.107 -14.492 19.755 Atomic orbital electron populations 1.23866 0.95652 1.02766 0.97656 1.23360 0.96920 0.97953 1.02822 1.18892 0.86172 0.85928 0.92001 0.86322 1.86552 1.53585 1.47515 1.47104 1.25319 0.83064 1.06767 0.98003 1.74025 1.21258 1.17576 0.98965 1.74568 0.93534 1.19138 1.23716 1.23699 0.94271 1.01062 0.79177 1.59359 0.94788 1.09199 1.53314 1.22481 0.94867 0.94304 0.95622 1.21695 0.92406 1.00060 1.01296 1.21665 1.02281 0.91421 0.99283 1.18717 0.86085 0.94772 0.96732 0.93337 1.21001 1.05588 0.96106 1.33242 0.92720 1.24905 0.97212 0.96991 0.94328 1.69956 1.17036 1.36497 1.28570 0.86622 0.79477 0.84209 0.77970 1.20689 1.21166 1.19899 1.22650 1.00653 0.83517 0.98860 1.47468 1.07585 1.54756 1.09233 1.21871 0.97643 0.97862 0.85441 1.22904 0.96483 0.96478 0.87620 1.87827 1.74258 1.31294 1.36772 1.22806 0.99544 0.87203 0.96808 0.87371 0.87706 0.86361 0.76071 0.94079 0.91562 0.92490 0.91120 0.94543 0.90023 0.92855 0.91019 0.95292 0.86701 0.87739 0.92348 0.91674 0.93831 0.93599 0.89003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 13.91 29.01 0.40 -0.90 16 2 C -0.19 -1.81 9.49 -36.03 -0.34 -2.15 16 3 C 0.23 2.43 3.89 -29.04 -0.11 2.32 16 4 H 0.12 1.07 7.43 -51.93 -0.39 0.69 16 5 O -0.54 -5.63 12.17 -35.23 -0.43 -6.06 16 6 C 0.14 1.91 6.91 -154.02 -1.06 0.85 16 7 N -0.28 -4.73 12.10 32.99 0.40 -4.33 16 8 N -0.27 -5.24 12.23 30.31 0.37 -4.87 16 9 C 0.37 6.64 6.65 -318.88 -2.12 4.52 16 10 N -0.44 -8.25 4.69 -174.56 -0.82 -9.07 16 11 C 0.05 0.88 4.31 -3.83 -0.02 0.86 16 12 C -0.12 -2.05 6.09 -26.65 -0.16 -2.21 16 13 C -0.11 -2.31 5.09 -26.61 -0.14 -2.45 16 14 C 0.06 1.32 2.13 -91.69 -0.19 1.12 16 15 H 0.05 1.30 8.10 -51.93 -0.42 0.88 16 16 C -0.52 -13.57 8.49 -34.44 -0.29 -13.86 16 17 H 0.05 1.41 7.76 -52.49 -0.41 1.00 16 18 C 0.07 1.82 5.25 -17.82 -0.09 1.72 16 19 N -0.88 -24.38 12.10 55.43 0.67 -23.71 16 20 Si 0.89 20.56 29.54 -169.99 -5.02 15.53 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 C 0.07 1.39 4.45 -3.84 -0.02 1.38 16 25 N -0.49 -7.06 2.81 -114.09 -0.32 -7.38 16 26 C 0.10 1.14 5.09 -4.04 -0.02 1.12 16 27 C 0.04 0.46 5.82 37.16 0.22 0.68 16 28 O -0.38 -4.20 10.70 -35.23 -0.38 -4.57 16 29 C 0.03 0.26 11.01 101.05 1.11 1.37 16 30 H 0.11 0.78 6.56 -52.48 -0.34 0.44 16 31 H 0.10 0.72 8.06 -52.48 -0.42 0.29 16 32 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.39 3.42 8.21 45.56 0.37 3.80 16 34 H 0.04 0.62 4.02 -51.93 -0.21 0.41 16 35 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.08 1.97 6.91 -51.93 -0.36 1.61 16 40 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 41 H 0.07 1.55 8.10 -51.93 -0.42 1.13 16 42 H 0.03 0.56 5.86 -51.93 -0.30 0.25 16 43 H 0.12 1.55 4.62 -51.93 -0.24 1.31 16 44 H 0.10 1.01 7.79 -51.93 -0.40 0.61 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.07 0.74 5.93 -51.93 -0.31 0.44 16 47 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 387.05 15.07 5.83 5.83 Total: -1.00 -30.58 387.05 -9.32 -39.90 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -6.79 Total: 4.36 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -2.84 Total: -5.64 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: 0.30 Total: -49.36 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -0.81 Total: -10.63 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.58 -9.32 -39.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355675724.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.427 kcal (2) G-P(sol) polarization free energy of solvation -30.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds