Wall clock time and date at job start Tue Mar 31 2020 19:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50693 * 120.00109 * 2 1 4 4 H 1.08997 * 109.47273 * 244.99620 * 3 2 1 5 5 O 1.42898 * 109.47193 * 4.99659 * 3 2 1 6 6 C 1.50700 * 109.47214 * 124.99685 * 3 2 1 7 7 N 1.30293 * 126.34898 * 285.02867 * 6 3 2 8 8 N 1.28526 * 110.05587 * 179.97438 * 7 6 3 9 9 C 1.31217 * 109.85927 * 359.97438 * 8 7 6 10 10 N 1.38581 * 126.47272 * 179.97438 * 9 8 7 11 11 C 1.46849 * 110.99861 * 235.46365 * 10 9 8 12 12 C 1.53035 * 109.52423 * 174.15962 * 11 10 9 13 13 C 1.53119 * 109.27758 * 59.17705 * 12 11 10 14 14 C 1.53118 * 109.16007 * 302.34284 * 13 12 11 15 15 H 1.08997 * 109.50853 * 297.71107 * 14 13 12 16 16 C 1.50703 * 109.50507 * 177.63539 * 14 13 12 17 17 H 1.07996 * 120.00457 * 245.52239 * 16 14 13 18 18 C 1.37885 * 119.99888 * 65.51434 * 16 14 13 19 19 N 1.31511 * 119.99582 * 7.78441 * 18 16 14 20 20 Si 1.86797 * 119.99998 * 187.78444 * 18 16 14 21 21 H 1.48500 * 109.47035 * 94.98644 * 20 18 16 22 22 H 1.48500 * 109.47175 * 214.98529 * 20 18 16 23 23 H 1.48500 * 109.47346 * 334.98967 * 20 18 16 24 24 C 1.46842 * 111.00239 * 111.25072 * 10 9 8 25 25 N 1.36452 * 107.05432 * 359.97438 * 9 8 7 26 26 C 1.46502 * 127.13580 * 179.97438 * 25 9 8 27 27 C 1.52999 * 109.47077 * 264.49794 * 26 25 9 28 28 O 1.42901 * 109.47048 * 182.42970 * 27 26 25 29 29 C 1.42897 * 114.00030 * 179.97438 * 28 27 26 30 30 H 1.08003 * 119.99950 * 0.02562 * 1 2 3 31 31 H 1.08003 * 120.00188 * 179.97438 * 1 2 3 32 32 H 1.07999 * 119.99577 * 180.02562 * 2 1 3 33 33 H 0.96705 * 114.00201 * 59.99917 * 5 3 2 34 34 H 1.09003 * 109.46102 * 294.17059 * 11 10 9 35 35 H 1.08993 * 109.46701 * 54.15225 * 11 10 9 36 36 H 1.08996 * 109.50355 * 179.11414 * 12 11 10 37 37 H 1.09000 * 109.50082 * 299.23782 * 12 11 10 38 38 H 1.08998 * 109.52628 * 62.25101 * 13 12 11 39 39 H 1.09001 * 109.52394 * 182.44008 * 13 12 11 40 40 H 0.97007 * 119.99605 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.46088 * 305.85040 * 24 10 9 42 42 H 1.08998 * 109.46445 * 65.81964 * 24 10 9 43 43 H 1.08994 * 109.47099 * 24.49663 * 26 25 9 44 44 H 1.08993 * 109.47134 * 144.49786 * 26 25 9 45 45 H 1.08997 * 109.47336 * 302.42495 * 27 26 25 46 46 H 1.08998 * 109.47607 * 62.43014 * 27 26 25 47 47 H 1.08996 * 109.47145 * 299.99899 * 29 28 27 48 48 H 1.09000 * 109.47068 * 59.99935 * 29 28 27 49 49 H 1.09007 * 109.46953 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 2.6214 1.4025 -0.9313 5 8 1.1394 2.3886 0.1173 6 6 3.0204 1.3326 1.1639 7 7 2.7085 1.5137 2.4159 8 7 3.7674 1.4784 3.1435 9 6 4.8203 1.2706 2.3885 10 7 6.1346 1.1719 2.8168 11 6 6.9906 2.1369 2.1151 12 6 8.3987 2.1011 2.7134 13 6 8.9710 0.6877 2.5748 14 6 8.0358 -0.3038 3.2727 15 1 7.9846 -0.0693 4.3359 16 6 8.5616 -1.7044 3.0913 17 1 7.9982 -2.4222 2.5136 18 6 9.7621 -2.0696 3.6628 19 7 10.3729 -1.2496 4.4899 20 14 10.5209 -3.7288 3.2623 21 1 11.5002 -3.5715 2.1571 22 1 11.2122 -4.2601 4.4644 23 1 9.4535 -4.6740 2.8469 24 6 6.6382 -0.1983 2.6581 25 7 4.3767 1.1702 1.1020 26 6 5.1859 0.9385 -0.0970 27 6 5.5134 2.2789 -0.7581 28 8 6.2545 2.0497 -1.9582 29 6 6.6125 3.2435 -2.6573 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8499 -0.9353 -0.0004 33 1 0.6074 2.3663 0.9246 34 1 7.0388 1.8778 1.0574 35 1 6.5748 3.1384 2.2251 36 1 9.0379 2.8062 2.1820 37 1 8.3531 2.3735 3.7678 38 1 9.0531 0.4297 1.5190 39 1 9.9567 0.6467 3.0384 40 1 11.2173 -1.5066 4.8923 41 1 5.9664 -0.8928 3.1625 42 1 6.6879 -0.4465 1.5979 43 1 6.1116 0.4349 0.1811 44 1 4.6290 0.3150 -0.7963 45 1 4.5875 2.8019 -0.9973 46 1 6.1073 2.8857 -0.0747 47 1 5.7091 3.7861 -2.9359 48 1 7.2290 3.8706 -2.0133 49 1 7.1727 2.9843 -3.5557 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355675724.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:00 Heat of formation + Delta-G solvation = -0.299825 kcal Electronic energy + Delta-G solvation = -30861.873668 eV Core-core repulsion = 26825.814117 eV Total energy + Delta-G solvation = -4036.059552 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.28913 -40.28413 -39.17206 -38.86552 -36.48286 -35.53884 -33.89143 -33.63226 -31.95631 -31.24471 -30.78179 -27.80559 -27.30255 -27.05982 -25.38857 -24.66498 -23.43630 -22.60211 -22.08252 -20.91359 -20.68203 -19.05495 -18.47015 -18.07102 -17.57853 -17.27943 -17.24841 -17.02003 -16.85639 -16.49330 -16.13450 -15.76199 -15.51839 -15.34597 -14.91979 -14.48945 -14.40063 -14.22540 -13.97332 -13.62490 -13.58661 -13.45524 -12.93387 -12.87372 -12.83374 -12.72017 -12.62130 -12.42908 -12.35590 -12.04313 -11.88227 -11.81229 -11.64997 -11.48316 -11.33389 -11.10070 -10.83474 -10.80825 -10.52656 -10.45511 -10.17484 -9.80741 -8.14199 -6.24388 0.44623 0.96378 1.29391 1.41295 1.43187 1.52457 1.63353 2.23928 2.45716 2.68413 3.09157 3.16879 3.24251 3.33966 3.61412 3.71163 3.78784 3.88054 3.90243 3.92572 4.07685 4.16011 4.24948 4.30984 4.34898 4.45365 4.47346 4.52012 4.54952 4.63005 4.69141 4.74905 4.80367 4.83735 4.90088 4.97713 5.00041 5.23182 5.28846 5.41447 5.58566 5.61030 5.65544 5.67598 5.94398 5.95585 5.99396 6.15816 6.31159 6.44881 6.86056 7.42992 7.58718 8.94360 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011825 B = 0.003553 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.316219 B = 7878.156169 C = 8660.850280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.212 4.212 3 C 0.237 3.763 4 H 0.139 0.861 5 O -0.544 6.544 6 C 0.159 3.841 7 N -0.304 5.304 8 N -0.307 5.307 9 C 0.359 3.641 10 N -0.458 5.458 11 C 0.061 3.939 12 C -0.109 4.109 13 C -0.098 4.098 14 C 0.056 3.944 15 H 0.004 0.996 16 C -0.537 4.537 17 H 0.053 0.947 18 C 0.021 3.979 19 N -0.913 5.913 20 Si 0.951 3.049 21 H -0.272 1.272 22 H -0.286 1.286 23 H -0.269 1.269 24 C 0.087 3.913 25 N -0.483 5.483 26 C 0.092 3.908 27 C 0.051 3.949 28 O -0.399 6.399 29 C 0.025 3.975 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.395 0.605 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.054 0.946 38 H 0.042 0.958 39 H 0.049 0.951 40 H 0.262 0.738 41 H 0.050 0.950 42 H 0.043 0.957 43 H 0.099 0.901 44 H 0.131 0.869 45 H 0.071 0.929 46 H 0.058 0.942 47 H 0.057 0.943 48 H 0.048 0.952 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.308 8.354 -17.151 23.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.231 4.231 3 C 0.175 3.825 4 H 0.157 0.843 5 O -0.350 6.350 6 C -0.110 4.110 7 N -0.145 5.145 8 N -0.148 5.148 9 C 0.003 3.997 10 N -0.183 5.183 11 C -0.066 4.066 12 C -0.147 4.147 13 C -0.136 4.136 14 C 0.037 3.963 15 H 0.022 0.978 16 C -0.575 4.575 17 H 0.072 0.928 18 C -0.179 4.179 19 N -0.552 5.552 20 Si 0.777 3.223 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.194 1.194 24 C -0.039 4.039 25 N -0.182 5.182 26 C -0.031 4.031 27 C -0.027 4.027 28 O -0.318 6.318 29 C -0.071 4.071 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.246 0.754 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.117 0.883 44 H 0.149 0.851 45 H 0.089 0.911 46 H 0.076 0.924 47 H 0.075 0.925 48 H 0.067 0.933 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.653 8.734 -15.930 22.725 hybrid contribution 1.374 -1.352 -0.634 2.029 sum -12.279 7.382 -16.564 21.900 Atomic orbital electron populations 1.24100 0.95271 1.03899 0.95196 1.23310 0.97414 0.97319 1.05041 1.19134 0.85750 0.86611 0.91032 0.84344 1.86548 1.53449 1.47564 1.47485 1.26111 0.83204 1.03558 0.98153 1.73952 1.20771 1.19502 1.00235 1.74463 0.94601 1.20253 1.25490 1.23337 0.93470 1.02433 0.80418 1.59128 0.95762 1.08419 1.54960 1.22495 0.93416 0.94502 0.96151 1.21602 0.93854 0.98142 1.01052 1.21437 1.00173 0.93318 0.98696 1.18590 0.88649 0.94479 0.94630 0.97819 1.21360 1.05811 0.97351 1.33019 0.92849 1.25646 0.97701 1.00324 0.94189 1.70084 1.17334 1.38243 1.29510 0.85654 0.78692 0.80239 0.77750 1.19797 1.21234 1.19378 1.22228 0.98131 0.84615 0.98910 1.47429 1.07909 1.53973 1.08890 1.22047 0.97086 0.99164 0.84807 1.22770 0.96995 0.95331 0.87602 1.87804 1.74363 1.32916 1.36699 1.23019 1.00462 0.86516 0.97058 0.86461 0.86372 0.86473 0.75354 0.92275 0.89990 0.89289 0.92746 0.93912 0.93188 0.92913 0.93180 0.93883 0.88296 0.85123 0.91054 0.92403 0.92468 0.93337 0.87702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 13.91 67.78 0.94 -1.03 16 2 C -0.21 -3.49 9.49 25.64 0.24 -3.24 16 3 C 0.24 4.33 3.89 29.10 0.11 4.44 16 4 H 0.14 1.98 7.43 -2.39 -0.02 1.96 16 5 O -0.54 -9.86 12.17 -148.98 -1.81 -11.67 16 6 C 0.16 4.20 6.91 137.64 0.95 5.15 16 7 N -0.30 -10.23 12.10 -49.54 -0.60 -10.83 16 8 N -0.31 -12.09 12.23 -58.00 -0.71 -12.80 16 9 C 0.36 12.75 6.65 260.11 1.73 14.48 16 10 N -0.46 -17.25 4.69 -706.17 -3.31 -20.56 16 11 C 0.06 1.91 4.31 86.32 0.37 2.28 16 12 C -0.11 -3.78 6.09 30.65 0.19 -3.59 16 13 C -0.10 -4.26 5.09 30.67 0.16 -4.10 16 14 C 0.06 2.72 2.13 -11.49 -0.02 2.70 16 15 H 0.00 0.21 8.10 -2.39 -0.02 0.19 16 16 C -0.54 -28.69 8.49 25.60 0.22 -28.48 16 17 H 0.05 2.80 7.76 -2.91 -0.02 2.77 16 18 C 0.02 1.15 5.25 84.66 0.44 1.59 16 19 N -0.91 -52.01 12.10 21.45 0.26 -51.75 16 20 Si 0.95 42.56 29.54 68.60 2.03 44.59 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 22 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 24 C 0.09 3.64 4.45 86.33 0.38 4.02 16 25 N -0.48 -13.21 2.81 -514.87 -1.44 -14.65 16 26 C 0.09 1.97 5.09 86.38 0.44 2.41 16 27 C 0.05 0.95 5.82 71.98 0.42 1.37 16 28 O -0.40 -7.59 10.70 -148.98 -1.59 -9.19 16 29 C 0.03 0.33 11.01 113.37 1.25 1.57 16 30 H 0.12 1.34 6.56 -2.91 -0.02 1.32 16 31 H 0.12 1.27 8.06 -2.91 -0.02 1.25 16 32 H 0.12 1.96 8.06 -2.91 -0.02 1.93 16 33 H 0.40 6.11 8.21 -74.05 -0.61 5.50 16 34 H 0.06 1.66 4.02 -2.39 -0.01 1.65 16 35 H 0.08 2.36 8.10 -2.39 -0.02 2.34 16 36 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.05 2.48 6.91 -2.39 -0.02 2.46 16 40 H 0.26 14.20 8.31 -92.70 -0.77 13.43 16 41 H 0.05 2.25 8.10 -2.39 -0.02 2.23 16 42 H 0.04 1.65 5.86 -2.39 -0.01 1.64 16 43 H 0.10 2.50 4.62 -2.39 -0.01 2.49 16 44 H 0.13 2.13 7.79 -2.39 -0.02 2.11 16 45 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.06 1.17 5.93 -2.39 -0.01 1.15 16 47 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.10 1.06 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -68.37 387.05 1.00 -67.38 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.36 Total: 19.93 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 7.82 Total: -0.44 kcal Atomic # 7 Polarization: -104.79 SS G_CDS: -5.80 Total: -110.60 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -3.41 Total: -20.86 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -68.37 1.00 -67.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355675724.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.076 kcal (2) G-P(sol) polarization free energy of solvation -68.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds