Wall clock time and date at job start Tue Mar 31 2020 19:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 120.00067 * 2 1 4 4 H 1.08998 * 109.47285 * 359.97438 * 3 2 1 5 5 O 1.42897 * 109.46746 * 239.99632 * 3 2 1 6 6 C 1.50692 * 109.47192 * 119.99670 * 3 2 1 7 7 N 1.30296 * 126.34825 * 74.68825 * 6 3 2 8 8 N 1.28529 * 110.05626 * 179.81802 * 7 6 3 9 9 C 1.31217 * 109.85604 * 0.45624 * 8 7 6 10 10 N 1.38587 * 126.47188 * 179.72676 * 9 8 7 11 11 C 1.46854 * 110.99659 * 63.12469 * 10 9 8 12 12 C 1.53035 * 109.51990 * 174.16153 * 11 10 9 13 13 C 1.53121 * 109.27916 * 59.18132 * 12 11 10 14 14 C 1.53123 * 109.16038 * 302.34504 * 13 12 11 15 15 H 1.09000 * 109.49914 * 297.71387 * 14 13 12 16 16 C 1.50693 * 109.53359 * 177.61745 * 14 13 12 17 17 H 1.08005 * 119.99920 * 240.17075 * 16 14 13 18 18 C 1.37880 * 120.00413 * 60.17700 * 16 14 13 19 19 N 1.31509 * 119.99598 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 120.00011 * 179.97438 * 18 16 14 21 21 H 1.48510 * 109.46960 * 90.00080 * 20 18 16 22 22 H 1.48497 * 109.47299 * 209.99617 * 20 18 16 23 23 H 1.48497 * 109.47370 * 330.00370 * 20 18 16 24 24 C 1.46843 * 111.00068 * 298.92049 * 10 9 8 25 25 N 1.36453 * 107.05813 * 359.72339 * 9 8 7 26 26 C 1.46492 * 127.13816 * 179.97438 * 25 9 8 27 27 C 1.53003 * 109.47558 * 272.08822 * 26 25 9 28 28 O 1.42899 * 109.47274 * 179.97438 * 27 26 25 29 29 C 1.42903 * 113.99952 * 180.02562 * 28 27 26 30 30 H 1.08006 * 120.00190 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.00511 * 180.02562 * 1 2 3 32 32 H 1.07994 * 119.99503 * 180.26987 * 2 1 3 33 33 H 0.96691 * 114.00409 * 299.99691 * 5 3 2 34 34 H 1.08994 * 109.46380 * 294.18043 * 11 10 9 35 35 H 1.08999 * 109.46016 * 54.14415 * 11 10 9 36 36 H 1.09002 * 109.50286 * 299.23828 * 12 11 10 37 37 H 1.09005 * 109.50193 * 179.12102 * 12 11 10 38 38 H 1.09000 * 109.52356 * 182.44191 * 13 12 11 39 39 H 1.08997 * 109.57367 * 62.28254 * 13 12 11 40 40 H 0.97009 * 119.99625 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.45997 * 305.85087 * 24 10 9 42 42 H 1.09003 * 109.46493 * 65.82901 * 24 10 9 43 43 H 1.09006 * 109.47161 * 32.09319 * 26 25 9 44 44 H 1.09002 * 109.47095 * 152.08925 * 26 25 9 45 45 H 1.08999 * 109.46939 * 300.00350 * 27 26 25 46 46 H 1.09001 * 109.46378 * 60.00202 * 27 26 25 47 47 H 1.08996 * 109.47345 * 300.00497 * 29 28 27 48 48 H 1.08997 * 109.46758 * 60.00364 * 29 28 27 49 49 H 1.08998 * 109.46816 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3553 2.1336 -0.0005 5 8 2.8851 1.3807 -1.1667 6 6 2.9298 1.3850 1.2304 7 7 4.0423 0.7382 1.4350 8 7 4.5238 1.0428 2.5871 9 6 3.7328 1.8998 3.1883 10 7 3.9200 2.4518 4.4457 11 6 5.1413 3.2663 4.4863 12 6 5.2388 3.9746 5.8394 13 6 5.2633 2.9283 6.9571 14 6 4.0039 2.0624 6.8626 15 1 3.1220 2.6856 7.0105 16 6 4.0475 0.9924 7.9228 17 1 4.0326 -0.0497 7.6392 18 6 4.1063 1.3435 9.2548 19 7 4.1238 2.6123 9.6001 20 14 4.1596 0.0170 10.5690 21 1 5.5725 -0.3384 10.8565 22 1 3.5141 0.5212 11.8077 23 1 3.4347 -1.1862 10.0875 24 6 3.9422 1.4096 5.4799 25 7 2.6911 2.1451 2.3417 26 6 1.5529 3.0372 2.5752 27 6 0.4409 2.2685 3.2918 28 8 -0.6692 3.1389 3.5201 29 6 -1.7683 2.5162 4.1883 30 1 -0.5401 0.9353 -0.0004 31 1 -0.5401 -0.9352 0.0004 32 1 1.8499 -0.9353 -0.0044 33 1 3.5405 0.6728 -1.2328 34 1 6.0110 2.6238 4.3491 35 1 5.1092 4.0089 3.6890 36 1 4.3762 4.6278 5.9712 37 1 6.1533 4.5667 5.8751 38 1 5.2889 3.4295 7.9247 39 1 6.1468 2.2992 6.8491 40 1 4.1655 2.8594 10.5373 41 1 3.0393 0.8037 5.4043 42 1 4.8177 0.7759 5.3382 43 1 1.8703 3.8773 3.1931 44 1 1.1806 3.4088 1.6205 45 1 0.1235 1.4285 2.6739 46 1 0.8132 1.8970 4.2466 47 1 -2.1319 1.6814 3.5892 48 1 -1.4414 2.1498 5.1614 49 1 -2.5698 3.2424 4.3235 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355675726.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:06 Heat of formation + Delta-G solvation = 12.604017 kcal Electronic energy + Delta-G solvation = -30609.592677 eV Core-core repulsion = 26574.092678 eV Total energy + Delta-G solvation = -4035.499999 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.98975 -38.50403 -38.21555 -37.73586 -35.26243 -33.95130 -33.58486 -31.94499 -30.13743 -30.07958 -29.36425 -26.57423 -26.18907 -25.07018 -24.06395 -23.51463 -21.76204 -21.49549 -20.68456 -20.44028 -18.67472 -17.84294 -17.01209 -16.84515 -16.66668 -16.18011 -15.94237 -15.72744 -15.52991 -14.94224 -14.81095 -14.55458 -14.08132 -13.87540 -13.54343 -13.36777 -12.99263 -12.81382 -12.63170 -12.61613 -12.46352 -12.03788 -11.90595 -11.71557 -11.58497 -11.47082 -10.99718 -10.86655 -10.78199 -10.73764 -10.50959 -10.23846 -10.17786 -10.03127 -9.97818 -9.88904 -9.63245 -9.31786 -8.96936 -8.76801 -8.43774 -8.24918 -6.05291 -4.11648 1.52755 1.89654 2.12307 2.87390 3.27321 3.34308 3.37159 3.51175 3.98457 4.12686 4.19774 4.36704 4.41023 4.47071 4.57369 4.70643 4.95635 4.98856 5.13821 5.21209 5.25028 5.26150 5.34379 5.41515 5.47378 5.51450 5.54221 5.68785 5.78643 5.89513 5.99742 6.10985 6.16026 6.23493 6.30320 6.33798 6.51626 6.59441 6.63194 6.79411 6.84326 7.00137 7.22590 7.25586 7.34762 7.63919 7.68886 7.94173 8.05739 8.36283 8.76842 8.91252 9.53214 11.00815 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012070 B = 0.003503 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.160305 B = 7990.563080 C = 8801.506855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.185 4.185 3 C 0.235 3.765 4 H 0.115 0.885 5 O -0.540 6.540 6 C 0.134 3.866 7 N -0.278 5.278 8 N -0.310 5.310 9 C 0.374 3.626 10 N -0.470 5.470 11 C 0.075 3.925 12 C -0.116 4.116 13 C -0.113 4.113 14 C 0.058 3.942 15 H 0.036 0.964 16 C -0.516 4.516 17 H 0.055 0.945 18 C 0.066 3.934 19 N -0.887 5.887 20 Si 0.891 3.109 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.081 3.919 25 N -0.458 5.458 26 C 0.115 3.885 27 C 0.050 3.950 28 O -0.386 6.386 29 C 0.033 3.967 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.122 0.878 33 H 0.390 0.610 34 H 0.046 0.954 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.095 0.905 39 H 0.036 0.964 40 H 0.261 0.739 41 H 0.057 0.943 42 H 0.042 0.958 43 H 0.115 0.885 44 H 0.098 0.902 45 H 0.052 0.948 46 H 0.068 0.932 47 H 0.041 0.959 48 H 0.049 0.951 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.331 0.801 -16.633 19.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.204 4.204 3 C 0.173 3.827 4 H 0.132 0.868 5 O -0.344 6.344 6 C -0.133 4.133 7 N -0.119 5.119 8 N -0.153 5.153 9 C 0.019 3.981 10 N -0.197 5.197 11 C -0.052 4.052 12 C -0.154 4.154 13 C -0.151 4.151 14 C 0.039 3.961 15 H 0.054 0.946 16 C -0.555 4.555 17 H 0.073 0.927 18 C -0.136 4.136 19 N -0.525 5.525 20 Si 0.719 3.281 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.045 4.045 25 N -0.153 5.153 26 C -0.009 4.009 27 C -0.028 4.028 28 O -0.304 6.304 29 C -0.063 4.063 30 H 0.119 0.881 31 H 0.125 0.875 32 H 0.140 0.860 33 H 0.239 0.761 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.113 0.887 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.060 0.940 43 H 0.133 0.867 44 H 0.116 0.884 45 H 0.071 0.929 46 H 0.086 0.914 47 H 0.059 0.941 48 H 0.067 0.933 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.922 1.044 -16.785 19.037 hybrid contribution -0.181 -1.145 1.234 1.693 sum -9.103 -0.102 -15.551 18.020 Atomic orbital electron populations 1.23945 0.95516 1.02592 0.97938 1.23447 0.96632 0.98474 1.01822 1.19045 0.88331 0.96652 0.78679 0.86758 1.86590 1.51848 1.55551 1.40452 1.25436 0.99191 0.96470 0.92250 1.73865 1.06985 1.20289 1.10785 1.74714 1.24177 1.14306 1.02124 1.22831 0.86633 0.96064 0.92606 1.59017 1.39639 1.24089 0.96906 1.22112 0.88611 0.95278 0.99191 1.21716 1.00788 0.98961 0.93943 1.21699 0.98682 0.96330 0.98415 1.18696 0.95084 0.94678 0.87615 0.94638 1.21065 1.51135 0.92579 0.90724 0.92714 1.24901 0.94920 0.95313 0.98467 1.69881 1.50264 1.15330 1.17055 0.86606 0.78237 0.82004 0.81231 1.20623 1.21212 1.19976 1.22464 1.00104 0.90798 0.91090 1.46189 1.19725 1.35110 1.14258 1.21546 0.83969 0.92499 1.02867 1.22718 0.86958 0.92507 1.00641 1.87772 1.25805 1.37524 1.79311 1.22788 0.88741 0.98447 0.96338 0.88116 0.87521 0.86009 0.76093 0.93529 0.92275 0.91851 0.92550 0.88696 0.94557 0.92942 0.92454 0.93955 0.86694 0.88374 0.92945 0.91380 0.94070 0.93274 0.89223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 14.32 29.01 0.42 -0.79 16 2 C -0.18 -1.67 9.10 -36.03 -0.33 -2.00 16 3 C 0.24 2.44 3.75 -29.04 -0.11 2.33 16 4 H 0.11 1.01 6.56 -51.93 -0.34 0.67 16 5 O -0.54 -5.77 13.31 -35.23 -0.47 -6.24 16 6 C 0.13 1.88 6.91 -154.02 -1.06 0.81 16 7 N -0.28 -4.71 12.10 32.99 0.40 -4.31 16 8 N -0.31 -5.95 12.19 30.32 0.37 -5.58 16 9 C 0.37 6.64 6.41 -318.87 -2.05 4.60 16 10 N -0.47 -8.70 4.67 -174.55 -0.82 -9.52 16 11 C 0.07 1.33 5.39 -3.83 -0.02 1.31 16 12 C -0.12 -2.14 6.09 -26.65 -0.16 -2.30 16 13 C -0.11 -2.56 5.03 -26.61 -0.13 -2.69 16 14 C 0.06 1.39 2.26 -91.70 -0.21 1.19 16 15 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 16 C -0.52 -13.72 8.56 -34.44 -0.29 -14.02 16 17 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 18 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 19 N -0.89 -24.37 11.36 55.43 0.63 -23.74 16 20 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 24 C 0.08 1.72 4.59 -3.84 -0.02 1.70 16 25 N -0.46 -6.63 2.81 -114.08 -0.32 -6.95 16 26 C 0.11 1.34 6.38 -4.04 -0.03 1.32 16 27 C 0.05 0.59 6.26 37.16 0.23 0.82 16 28 O -0.39 -4.52 10.70 -35.23 -0.38 -4.90 16 29 C 0.03 0.31 11.01 101.05 1.11 1.42 16 30 H 0.10 0.64 7.83 -52.48 -0.41 0.23 16 31 H 0.11 0.66 8.06 -52.49 -0.42 0.24 16 32 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.39 3.39 8.97 45.56 0.41 3.80 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.09 2.39 6.17 -51.93 -0.32 2.07 16 39 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 41 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 42 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 44 H 0.10 0.89 7.03 -51.93 -0.37 0.52 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 47 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 402.02 15.07 6.06 6.06 Total: -1.00 -30.57 402.02 -9.62 -40.19 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -7.33 Total: 3.85 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -2.74 Total: -4.64 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: 0.26 Total: -50.11 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -0.85 Total: -11.14 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.57 -9.62 -40.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355675726.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.793 kcal (2) G-P(sol) polarization free energy of solvation -30.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds