Wall clock time and date at job start Tue Mar 31 2020 19:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 120.00067 * 2 1 4 4 H 1.08998 * 109.47285 * 359.97438 * 3 2 1 5 5 O 1.42897 * 109.46746 * 239.99632 * 3 2 1 6 6 C 1.50692 * 109.47192 * 119.99670 * 3 2 1 7 7 N 1.30296 * 126.34825 * 74.68825 * 6 3 2 8 8 N 1.28529 * 110.05626 * 179.81802 * 7 6 3 9 9 C 1.31217 * 109.85604 * 0.45624 * 8 7 6 10 10 N 1.38587 * 126.47188 * 179.72676 * 9 8 7 11 11 C 1.46854 * 110.99659 * 63.12469 * 10 9 8 12 12 C 1.53035 * 109.51990 * 174.16153 * 11 10 9 13 13 C 1.53121 * 109.27916 * 59.18132 * 12 11 10 14 14 C 1.53123 * 109.16038 * 302.34504 * 13 12 11 15 15 H 1.09000 * 109.49914 * 297.71387 * 14 13 12 16 16 C 1.50693 * 109.53359 * 177.61745 * 14 13 12 17 17 H 1.08005 * 119.99920 * 240.17075 * 16 14 13 18 18 C 1.37880 * 120.00413 * 60.17700 * 16 14 13 19 19 N 1.31509 * 119.99598 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 120.00011 * 179.97438 * 18 16 14 21 21 H 1.48510 * 109.46960 * 90.00080 * 20 18 16 22 22 H 1.48497 * 109.47299 * 209.99617 * 20 18 16 23 23 H 1.48497 * 109.47370 * 330.00370 * 20 18 16 24 24 C 1.46843 * 111.00068 * 298.92049 * 10 9 8 25 25 N 1.36453 * 107.05813 * 359.72339 * 9 8 7 26 26 C 1.46492 * 127.13816 * 179.97438 * 25 9 8 27 27 C 1.53003 * 109.47558 * 272.08822 * 26 25 9 28 28 O 1.42899 * 109.47274 * 179.97438 * 27 26 25 29 29 C 1.42903 * 113.99952 * 180.02562 * 28 27 26 30 30 H 1.08006 * 120.00190 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.00511 * 180.02562 * 1 2 3 32 32 H 1.07994 * 119.99503 * 180.26987 * 2 1 3 33 33 H 0.96691 * 114.00409 * 299.99691 * 5 3 2 34 34 H 1.08994 * 109.46380 * 294.18043 * 11 10 9 35 35 H 1.08999 * 109.46016 * 54.14415 * 11 10 9 36 36 H 1.09002 * 109.50286 * 299.23828 * 12 11 10 37 37 H 1.09005 * 109.50193 * 179.12102 * 12 11 10 38 38 H 1.09000 * 109.52356 * 182.44191 * 13 12 11 39 39 H 1.08997 * 109.57367 * 62.28254 * 13 12 11 40 40 H 0.97009 * 119.99625 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.45997 * 305.85087 * 24 10 9 42 42 H 1.09003 * 109.46493 * 65.82901 * 24 10 9 43 43 H 1.09006 * 109.47161 * 32.09319 * 26 25 9 44 44 H 1.09002 * 109.47095 * 152.08925 * 26 25 9 45 45 H 1.08999 * 109.46939 * 300.00350 * 27 26 25 46 46 H 1.09001 * 109.46378 * 60.00202 * 27 26 25 47 47 H 1.08996 * 109.47345 * 300.00497 * 29 28 27 48 48 H 1.08997 * 109.46758 * 60.00364 * 29 28 27 49 49 H 1.08998 * 109.46816 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3553 2.1336 -0.0005 5 8 2.8851 1.3807 -1.1667 6 6 2.9298 1.3850 1.2304 7 7 4.0423 0.7382 1.4350 8 7 4.5238 1.0428 2.5871 9 6 3.7328 1.8998 3.1883 10 7 3.9200 2.4518 4.4457 11 6 5.1413 3.2663 4.4863 12 6 5.2388 3.9746 5.8394 13 6 5.2633 2.9283 6.9571 14 6 4.0039 2.0624 6.8626 15 1 3.1220 2.6856 7.0105 16 6 4.0475 0.9924 7.9228 17 1 4.0326 -0.0497 7.6392 18 6 4.1063 1.3435 9.2548 19 7 4.1238 2.6123 9.6001 20 14 4.1596 0.0170 10.5690 21 1 5.5725 -0.3384 10.8565 22 1 3.5141 0.5212 11.8077 23 1 3.4347 -1.1862 10.0875 24 6 3.9422 1.4096 5.4799 25 7 2.6911 2.1451 2.3417 26 6 1.5529 3.0372 2.5752 27 6 0.4409 2.2685 3.2918 28 8 -0.6692 3.1389 3.5201 29 6 -1.7683 2.5162 4.1883 30 1 -0.5401 0.9353 -0.0004 31 1 -0.5401 -0.9352 0.0004 32 1 1.8499 -0.9353 -0.0044 33 1 3.5405 0.6728 -1.2328 34 1 6.0110 2.6238 4.3491 35 1 5.1092 4.0089 3.6890 36 1 4.3762 4.6278 5.9712 37 1 6.1533 4.5667 5.8751 38 1 5.2889 3.4295 7.9247 39 1 6.1468 2.2992 6.8491 40 1 4.1655 2.8594 10.5373 41 1 3.0393 0.8037 5.4043 42 1 4.8177 0.7759 5.3382 43 1 1.8703 3.8773 3.1931 44 1 1.1806 3.4088 1.6205 45 1 0.1235 1.4285 2.6739 46 1 0.8132 1.8970 4.2466 47 1 -2.1319 1.6814 3.5892 48 1 -1.4414 2.1498 5.1614 49 1 -2.5698 3.2424 4.3235 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355675726.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:04 Heat of formation + Delta-G solvation = -6.893299 kcal Electronic energy + Delta-G solvation = -30610.438144 eV Core-core repulsion = 26574.092678 eV Total energy + Delta-G solvation = -4036.345466 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.22887 -40.02414 -39.11052 -38.63514 -36.38285 -35.70576 -34.34748 -33.63569 -31.87011 -31.16553 -30.59110 -27.43616 -27.11269 -27.02520 -25.52887 -24.62410 -23.35881 -22.70137 -21.92412 -21.26616 -20.35836 -19.05239 -18.41313 -17.86567 -17.68899 -17.43843 -17.12756 -16.84468 -16.59167 -16.46996 -15.95755 -15.66514 -15.54238 -15.27614 -14.65289 -14.57478 -14.46767 -14.25367 -14.05815 -13.64883 -13.54899 -13.43568 -12.91739 -12.87824 -12.79225 -12.74805 -12.62376 -12.43567 -12.34716 -11.95991 -11.85683 -11.82790 -11.50755 -11.45947 -11.31534 -11.11640 -10.81838 -10.80472 -10.62466 -10.43246 -10.15249 -9.84538 -8.11289 -6.24742 0.42470 0.95707 1.17072 1.40335 1.42048 1.51146 1.62068 2.37173 2.50100 2.84537 3.16627 3.18859 3.31576 3.54119 3.64904 3.76776 3.83153 3.83964 4.05231 4.07801 4.15433 4.23020 4.29761 4.38112 4.44506 4.48450 4.51167 4.53062 4.58878 4.68816 4.78587 4.80494 4.83725 4.90093 4.96125 4.97929 5.04821 5.25816 5.36605 5.48373 5.56240 5.60886 5.62218 5.69192 5.96247 5.98266 6.09642 6.20980 6.35200 6.49179 6.83928 7.42936 7.50396 8.93506 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012070 B = 0.003503 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.160305 B = 7990.563080 C = 8801.506855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.209 4.209 3 C 0.239 3.761 4 H 0.138 0.862 5 O -0.546 6.546 6 C 0.157 3.843 7 N -0.306 5.306 8 N -0.342 5.342 9 C 0.356 3.644 10 N -0.464 5.464 11 C 0.079 3.921 12 C -0.105 4.105 13 C -0.106 4.106 14 C 0.061 3.939 15 H 0.009 0.991 16 C -0.539 4.539 17 H 0.046 0.954 18 C 0.023 3.977 19 N -0.909 5.909 20 Si 0.950 3.050 21 H -0.277 1.277 22 H -0.280 1.280 23 H -0.272 1.272 24 C 0.102 3.898 25 N -0.452 5.452 26 C 0.111 3.889 27 C 0.058 3.942 28 O -0.396 6.396 29 C 0.027 3.973 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.114 0.886 33 H 0.396 0.604 34 H 0.036 0.964 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.024 0.976 40 H 0.262 0.738 41 H 0.048 0.952 42 H 0.024 0.976 43 H 0.107 0.893 44 H 0.135 0.865 45 H 0.069 0.931 46 H 0.035 0.965 47 H 0.060 0.940 48 H 0.034 0.966 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.013 1.164 -18.370 21.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.228 4.228 3 C 0.177 3.823 4 H 0.156 0.844 5 O -0.352 6.352 6 C -0.111 4.111 7 N -0.147 5.147 8 N -0.185 5.185 9 C -0.002 4.002 10 N -0.190 5.190 11 C -0.048 4.048 12 C -0.142 4.142 13 C -0.144 4.144 14 C 0.042 3.958 15 H 0.027 0.973 16 C -0.578 4.578 17 H 0.065 0.935 18 C -0.177 4.177 19 N -0.548 5.548 20 Si 0.776 3.224 21 H -0.202 1.202 22 H -0.205 1.205 23 H -0.197 1.197 24 C -0.025 4.025 25 N -0.146 5.146 26 C -0.011 4.011 27 C -0.020 4.020 28 O -0.314 6.314 29 C -0.069 4.069 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.132 0.868 33 H 0.247 0.753 34 H 0.054 0.946 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.043 0.957 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.043 0.957 43 H 0.125 0.875 44 H 0.153 0.847 45 H 0.087 0.913 46 H 0.053 0.947 47 H 0.078 0.922 48 H 0.053 0.947 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.611 1.409 -18.540 21.408 hybrid contribution 0.232 -1.274 1.699 2.136 sum -10.379 0.134 -16.841 19.783 Atomic orbital electron populations 1.24222 0.94857 1.04095 0.94693 1.23321 0.97246 0.97490 1.04749 1.19351 0.87843 0.98345 0.76767 0.84443 1.86571 1.52223 1.56152 1.40279 1.26296 0.98181 0.94030 0.92632 1.73801 1.08731 1.21842 1.10343 1.74616 1.25598 1.15075 1.03245 1.22655 0.87947 0.96990 0.92562 1.58905 1.39990 1.23034 0.97059 1.22102 0.87931 0.95374 0.99359 1.21597 1.02146 0.97842 0.92659 1.21507 0.97324 0.96810 0.98803 1.18562 0.94531 0.94048 0.88643 0.97313 1.21376 1.51530 0.92854 0.92004 0.93544 1.25592 0.94544 0.97257 1.00283 1.69995 1.50561 1.16739 1.17457 0.85677 0.78278 0.79616 0.78803 1.20239 1.20545 1.19669 1.22018 0.98756 0.90883 0.90858 1.46290 1.19519 1.35131 1.13656 1.21784 0.82976 0.91629 1.04694 1.22566 0.87176 0.92995 0.99262 1.87754 1.26119 1.38020 1.79501 1.22981 0.88414 0.99708 0.95828 0.86392 0.86216 0.86767 0.75318 0.94594 0.89780 0.91792 0.89952 0.91364 0.95716 0.92834 0.93313 0.95749 0.87478 0.84728 0.91293 0.94696 0.92156 0.94693 0.87355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 14.32 67.78 0.97 -0.60 16 2 C -0.21 -3.26 9.10 25.64 0.23 -3.03 16 3 C 0.24 4.32 3.75 29.10 0.11 4.43 16 4 H 0.14 1.84 6.56 -2.39 -0.02 1.82 16 5 O -0.55 -10.51 13.31 -148.98 -1.98 -12.49 16 6 C 0.16 4.17 6.91 137.64 0.95 5.12 16 7 N -0.31 -10.30 12.10 -49.54 -0.60 -10.90 16 8 N -0.34 -13.27 12.19 -58.00 -0.71 -13.97 16 9 C 0.36 12.61 6.41 260.11 1.67 14.27 16 10 N -0.46 -17.42 4.67 -706.16 -3.30 -20.71 16 11 C 0.08 2.78 5.39 86.32 0.47 3.24 16 12 C -0.10 -3.83 6.09 30.65 0.19 -3.64 16 13 C -0.11 -4.94 5.03 30.68 0.15 -4.79 16 14 C 0.06 3.05 2.26 -11.49 -0.03 3.02 16 15 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 16 C -0.54 -29.66 8.56 25.60 0.22 -29.44 16 17 H 0.05 2.56 7.74 -2.91 -0.02 2.54 16 18 C 0.02 1.25 5.30 84.66 0.45 1.70 16 19 N -0.91 -51.06 11.36 21.45 0.24 -50.81 16 20 Si 0.95 43.23 29.54 68.60 2.03 45.26 16 21 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 24 C 0.10 4.49 4.59 86.32 0.40 4.89 16 25 N -0.45 -12.51 2.81 -514.85 -1.45 -13.96 16 26 C 0.11 2.38 6.38 86.38 0.55 2.93 16 27 C 0.06 1.28 6.26 71.98 0.45 1.73 16 28 O -0.40 -8.52 10.70 -148.98 -1.59 -10.11 16 29 C 0.03 0.45 11.01 113.37 1.25 1.69 16 30 H 0.12 0.92 7.83 -2.91 -0.02 0.90 16 31 H 0.12 1.05 8.06 -2.91 -0.02 1.02 16 32 H 0.11 1.94 8.06 -2.91 -0.02 1.92 16 33 H 0.40 6.40 8.97 -74.06 -0.66 5.73 16 34 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 2.57 8.10 -2.39 -0.02 2.55 16 36 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 38 H 0.07 3.55 6.17 -2.39 -0.01 3.53 16 39 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.26 14.02 8.31 -92.70 -0.77 13.25 16 41 H 0.05 2.19 8.10 -2.39 -0.02 2.17 16 42 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.11 2.51 8.14 -2.38 -0.02 2.49 16 44 H 0.13 1.91 7.03 -2.39 -0.02 1.89 16 45 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.03 1.00 8.14 -2.39 -0.02 0.99 16 47 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -68.09 402.02 0.94 -67.15 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.27 Total: 19.03 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: 8.03 Total: 1.52 kcal Atomic # 7 Polarization: -104.56 SS G_CDS: -5.81 Total: -110.36 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -3.58 Total: -22.60 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -68.09 0.94 -67.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355675726.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.257 kcal (2) G-P(sol) polarization free energy of solvation -68.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds