Wall clock time and date at job start Tue Mar 31 2020 19:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 119.99725 * 2 1 4 4 H 1.09006 * 109.46766 * 245.00241 * 3 2 1 5 5 O 1.42896 * 109.47120 * 4.99718 * 3 2 1 6 6 C 1.50694 * 109.47014 * 125.00121 * 3 2 1 7 7 N 1.30293 * 126.34677 * 284.68256 * 6 3 2 8 8 N 1.28531 * 110.05331 * 179.82495 * 7 6 3 9 9 C 1.31223 * 109.85998 * 0.45151 * 8 7 6 10 10 N 1.38575 * 126.47530 * 179.72707 * 9 8 7 11 11 C 1.46848 * 111.00089 * 272.27749 * 10 9 8 12 12 C 1.53036 * 109.52339 * 185.83865 * 11 10 9 13 13 C 1.53123 * 109.27961 * 300.81865 * 12 11 10 14 14 C 1.53122 * 109.15881 * 57.65392 * 13 12 11 15 15 H 1.08993 * 109.50791 * 62.28924 * 14 13 12 16 16 C 1.50702 * 109.49954 * 182.41086 * 14 13 12 17 17 H 1.08003 * 120.00195 * 119.80290 * 16 14 13 18 18 C 1.37876 * 119.99647 * 299.79417 * 16 14 13 19 19 N 1.31516 * 120.00311 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 119.99859 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46891 * 60.01106 * 20 18 16 22 22 H 1.48501 * 109.47493 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47368 * 300.00769 * 20 18 16 24 24 C 1.46851 * 110.99724 * 36.48423 * 10 9 8 25 25 N 1.36453 * 107.05272 * 359.73245 * 9 8 7 26 26 C 1.46498 * 127.13676 * 179.97438 * 25 9 8 27 27 C 1.53006 * 109.46972 * 264.76157 * 26 25 9 28 28 O 1.42900 * 109.47115 * 185.04793 * 27 26 25 29 29 C 1.42898 * 114.00025 * 180.02562 * 28 27 26 30 30 H 1.08000 * 119.99909 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.00085 * 359.72465 * 1 2 3 32 32 H 1.08003 * 119.99994 * 179.97438 * 2 1 3 33 33 H 0.96709 * 114.00130 * 60.00492 * 5 3 2 34 34 H 1.09000 * 109.45753 * 305.84866 * 11 10 9 35 35 H 1.08995 * 109.46317 * 65.82009 * 11 10 9 36 36 H 1.08996 * 109.50827 * 180.87396 * 12 11 10 37 37 H 1.09003 * 109.53848 * 60.77528 * 12 11 10 38 38 H 1.08999 * 109.51814 * 297.74957 * 13 12 11 39 39 H 1.08990 * 109.52202 * 177.56061 * 13 12 11 40 40 H 0.96995 * 120.00391 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.46169 * 294.17748 * 24 10 9 42 42 H 1.08991 * 109.46373 * 54.15448 * 24 10 9 43 43 H 1.08995 * 109.47134 * 24.76220 * 26 25 9 44 44 H 1.08995 * 109.47265 * 144.76723 * 26 25 9 45 45 H 1.08993 * 109.46998 * 305.05010 * 27 26 25 46 46 H 1.09005 * 109.46791 * 65.04863 * 27 26 25 47 47 H 1.08999 * 109.47008 * 179.97438 * 29 28 27 48 48 H 1.08996 * 109.47224 * 300.00197 * 29 28 27 49 49 H 1.09003 * 109.46949 * 60.00170 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 2.6212 1.4027 -0.9315 5 8 1.1393 2.3887 0.1174 6 6 3.0204 1.3327 1.1638 7 7 2.7092 1.5200 2.4151 8 7 3.7676 1.4794 3.1433 9 6 4.8205 1.2719 2.3882 10 7 6.1348 1.1731 2.8163 11 6 6.7708 2.4955 2.8723 12 6 8.2556 2.3352 3.2066 13 6 8.3962 1.6231 4.5549 14 6 7.6838 0.2694 4.4850 15 1 8.1608 -0.3542 3.7290 16 6 7.7666 -0.4124 5.8264 17 1 6.8625 -0.6639 6.3611 18 6 8.9965 -0.7154 6.3709 19 7 10.0974 -0.4089 5.7200 20 14 9.0992 -1.5613 8.0332 21 1 8.4043 -2.8720 7.9654 22 1 10.5241 -1.7742 8.3933 23 1 8.4508 -0.7099 9.0628 24 6 6.2156 0.4897 4.1136 25 7 4.3769 1.1719 1.1016 26 6 5.1861 0.9406 -0.0975 27 6 5.5190 2.2817 -0.7545 28 8 6.2070 2.0513 -1.9856 29 6 6.5664 3.2456 -2.6830 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9353 0.0045 32 1 1.8500 -0.9353 0.0004 33 1 0.6074 2.3663 0.9247 34 1 6.6674 2.9894 1.9061 35 1 6.2884 3.0983 3.6416 36 1 8.7241 3.3176 3.2634 37 1 8.7422 1.7443 2.4306 38 1 7.9444 2.2325 5.3375 39 1 9.4520 1.4681 4.7766 40 1 10.9627 -0.6217 6.1032 41 1 5.7357 1.1020 4.8771 42 1 5.7091 -0.4732 4.0490 43 1 6.1097 0.4327 0.1799 44 1 4.6273 0.3213 -0.7990 45 1 4.5971 2.8291 -0.9504 46 1 6.1535 2.8655 -0.0875 47 1 7.0846 2.9854 -3.6059 48 1 5.6664 3.8134 -2.9189 49 1 7.2227 3.8490 -2.0559 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355675729.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:10 Heat of formation + Delta-G solvation = 14.691403 kcal Electronic energy + Delta-G solvation = -30371.887366 eV Core-core repulsion = 26336.477882 eV Total energy + Delta-G solvation = -4035.409483 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.98786 -38.58997 -38.36813 -37.94621 -35.29704 -33.90569 -33.04858 -31.99720 -30.20901 -30.06182 -29.51126 -26.72797 -26.49242 -25.07171 -24.04813 -23.63466 -21.76324 -21.34190 -20.67034 -20.16037 -18.69406 -17.89422 -17.22476 -16.89842 -16.43997 -16.25305 -16.19371 -15.94138 -15.61568 -15.07452 -14.88246 -14.55304 -14.14238 -13.83254 -13.57467 -13.33181 -12.93780 -12.78429 -12.64839 -12.61397 -12.47727 -11.98203 -11.91581 -11.78506 -11.67345 -11.47991 -10.96314 -10.89339 -10.85061 -10.75805 -10.52389 -10.29098 -10.19651 -10.05584 -9.95162 -9.81342 -9.60669 -9.29042 -9.19473 -8.77642 -8.37928 -8.12577 -6.02454 -4.08399 1.62702 1.84737 2.18810 2.88584 3.32251 3.36352 3.38240 3.41444 3.93484 4.03721 4.18888 4.35592 4.44301 4.48463 4.57350 4.73078 4.86152 4.96190 4.99883 5.02839 5.09774 5.27371 5.31320 5.33144 5.35109 5.48416 5.56471 5.60324 5.73491 5.83932 5.91940 6.11684 6.21694 6.28679 6.33194 6.35462 6.48949 6.56958 6.65080 6.70827 6.80896 6.99289 7.18593 7.23449 7.33537 7.62402 7.70892 7.96201 8.07301 8.39068 8.80608 8.94558 9.56355 11.03856 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012456 B = 0.003294 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.395931 B = 8499.104397 C =10051.467764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.191 4.191 3 C 0.234 3.766 4 H 0.120 0.880 5 O -0.542 6.542 6 C 0.132 3.868 7 N -0.274 5.274 8 N -0.311 5.311 9 C 0.377 3.623 10 N -0.465 5.465 11 C 0.073 3.927 12 C -0.116 4.116 13 C -0.114 4.114 14 C 0.057 3.943 15 H 0.036 0.964 16 C -0.515 4.515 17 H 0.056 0.944 18 C 0.065 3.935 19 N -0.889 5.889 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.082 3.918 25 N -0.463 5.463 26 C 0.111 3.889 27 C 0.048 3.952 28 O -0.385 6.385 29 C 0.033 3.967 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.119 0.881 33 H 0.389 0.611 34 H 0.055 0.945 35 H 0.043 0.957 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.036 0.964 39 H 0.096 0.904 40 H 0.261 0.739 41 H 0.045 0.955 42 H 0.063 0.937 43 H 0.119 0.881 44 H 0.101 0.899 45 H 0.055 0.945 46 H 0.061 0.939 47 H 0.090 0.910 48 H 0.043 0.957 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.356 5.939 -17.517 21.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.210 4.210 3 C 0.172 3.828 4 H 0.138 0.862 5 O -0.348 6.348 6 C -0.135 4.135 7 N -0.115 5.115 8 N -0.155 5.155 9 C 0.022 3.978 10 N -0.191 5.191 11 C -0.054 4.054 12 C -0.154 4.154 13 C -0.152 4.152 14 C 0.038 3.962 15 H 0.054 0.946 16 C -0.554 4.554 17 H 0.074 0.926 18 C -0.137 4.137 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.043 4.043 25 N -0.159 5.159 26 C -0.013 4.013 27 C -0.030 4.030 28 O -0.303 6.303 29 C -0.063 4.063 30 H 0.123 0.877 31 H 0.126 0.874 32 H 0.137 0.863 33 H 0.239 0.761 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.114 0.886 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.082 0.918 43 H 0.137 0.863 44 H 0.119 0.881 45 H 0.073 0.927 46 H 0.079 0.921 47 H 0.109 0.891 48 H 0.061 0.939 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.415 5.890 -17.247 21.505 hybrid contribution 0.373 -0.226 0.904 1.004 sum -11.042 5.664 -16.344 20.521 Atomic orbital electron populations 1.23866 0.95677 1.02758 0.97691 1.23366 0.96902 0.97970 1.02784 1.18874 0.86089 0.85891 0.91933 0.86220 1.86552 1.53569 1.47561 1.47080 1.25342 0.82549 1.07672 0.97985 1.73868 1.21697 1.16943 0.98954 1.74759 0.94885 1.20787 1.25090 1.22909 0.93606 0.99902 0.81411 1.58951 1.05642 1.20796 1.33745 1.22171 0.96795 0.86755 0.99682 1.21718 0.92293 1.00226 1.01156 1.21713 1.04890 0.96464 0.92090 1.18715 0.87287 0.93554 0.96643 0.94619 1.21046 0.92441 1.38458 1.03453 0.92590 1.24905 0.95710 0.95578 0.97463 1.69864 0.97462 1.47249 1.38185 0.86649 0.76862 0.80149 0.84300 1.20256 1.21312 1.20239 1.22435 1.01907 0.96353 0.83630 1.46131 1.06973 1.54852 1.07993 1.21590 0.97800 0.97437 0.84458 1.22783 0.96858 0.96726 0.86606 1.87807 1.76964 1.31129 1.34358 1.22792 0.99429 0.87246 0.96871 0.87720 0.87389 0.86338 0.76073 0.92621 0.93865 0.92598 0.91740 0.94559 0.88614 0.92917 0.93633 0.91799 0.86301 0.88090 0.92653 0.92112 0.89109 0.93885 0.93642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 13.92 29.01 0.40 -0.89 16 2 C -0.19 -1.76 9.49 -36.03 -0.34 -2.10 16 3 C 0.23 2.40 3.89 -29.04 -0.11 2.29 16 4 H 0.12 1.04 7.42 -51.93 -0.39 0.65 16 5 O -0.54 -5.61 12.18 -35.23 -0.43 -6.04 16 6 C 0.13 1.84 6.92 -154.01 -1.07 0.77 16 7 N -0.27 -4.70 12.09 32.99 0.40 -4.30 16 8 N -0.31 -6.07 11.70 30.31 0.35 -5.71 16 9 C 0.38 6.68 6.71 -318.87 -2.14 4.55 16 10 N -0.47 -8.60 4.64 -174.55 -0.81 -9.41 16 11 C 0.07 1.24 5.40 -3.83 -0.02 1.22 16 12 C -0.12 -2.09 6.09 -26.65 -0.16 -2.25 16 13 C -0.11 -2.55 5.03 -26.60 -0.13 -2.69 16 14 C 0.06 1.38 2.26 -91.69 -0.21 1.17 16 15 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 16 C -0.52 -13.88 8.56 -34.44 -0.29 -14.18 16 17 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 18 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 19 N -0.89 -24.63 11.36 55.43 0.63 -24.00 16 20 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 24 C 0.08 1.78 4.32 -3.83 -0.02 1.76 16 25 N -0.46 -6.56 2.81 -114.09 -0.32 -6.88 16 26 C 0.11 1.23 6.09 -4.04 -0.02 1.21 16 27 C 0.05 0.49 6.26 37.16 0.23 0.73 16 28 O -0.38 -3.94 10.70 -35.23 -0.38 -4.32 16 29 C 0.03 0.25 11.01 101.05 1.11 1.36 16 30 H 0.10 0.70 8.06 -52.49 -0.42 0.28 16 31 H 0.11 0.77 6.55 -52.49 -0.34 0.43 16 32 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 33 H 0.39 3.45 8.20 45.56 0.37 3.83 16 34 H 0.06 0.83 6.83 -51.93 -0.35 0.47 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.10 2.41 6.16 -51.93 -0.32 2.09 16 40 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 41 H 0.05 1.04 8.06 -51.93 -0.42 0.62 16 42 H 0.06 1.43 8.10 -51.93 -0.42 1.01 16 43 H 0.12 1.45 8.11 -51.93 -0.42 1.03 16 44 H 0.10 0.89 7.77 -51.93 -0.40 0.48 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.67 6.87 -51.93 -0.36 0.32 16 47 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 49 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 397.10 15.07 5.98 5.98 Total: -1.00 -30.85 397.10 -9.70 -40.54 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -7.24 Total: 3.48 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -2.86 Total: -5.39 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: 0.25 Total: -50.32 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -0.81 Total: -10.35 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.85 -9.70 -40.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355675729.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.235 kcal (2) G-P(sol) polarization free energy of solvation -30.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds