Wall clock time and date at job start Tue Mar 31 2020 19:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 119.99725 * 2 1 4 4 H 1.09006 * 109.46766 * 245.00241 * 3 2 1 5 5 O 1.42896 * 109.47120 * 4.99718 * 3 2 1 6 6 C 1.50694 * 109.47014 * 125.00121 * 3 2 1 7 7 N 1.30293 * 126.34677 * 284.68256 * 6 3 2 8 8 N 1.28531 * 110.05331 * 179.82495 * 7 6 3 9 9 C 1.31223 * 109.85998 * 0.45151 * 8 7 6 10 10 N 1.38575 * 126.47530 * 179.72707 * 9 8 7 11 11 C 1.46848 * 111.00089 * 272.27749 * 10 9 8 12 12 C 1.53036 * 109.52339 * 185.83865 * 11 10 9 13 13 C 1.53123 * 109.27961 * 300.81865 * 12 11 10 14 14 C 1.53122 * 109.15881 * 57.65392 * 13 12 11 15 15 H 1.08993 * 109.50791 * 62.28924 * 14 13 12 16 16 C 1.50702 * 109.49954 * 182.41086 * 14 13 12 17 17 H 1.08003 * 120.00195 * 119.80290 * 16 14 13 18 18 C 1.37876 * 119.99647 * 299.79417 * 16 14 13 19 19 N 1.31516 * 120.00311 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 119.99859 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46891 * 60.01106 * 20 18 16 22 22 H 1.48501 * 109.47493 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47368 * 300.00769 * 20 18 16 24 24 C 1.46851 * 110.99724 * 36.48423 * 10 9 8 25 25 N 1.36453 * 107.05272 * 359.73245 * 9 8 7 26 26 C 1.46498 * 127.13676 * 179.97438 * 25 9 8 27 27 C 1.53006 * 109.46972 * 264.76157 * 26 25 9 28 28 O 1.42900 * 109.47115 * 185.04793 * 27 26 25 29 29 C 1.42898 * 114.00025 * 180.02562 * 28 27 26 30 30 H 1.08000 * 119.99909 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.00085 * 359.72465 * 1 2 3 32 32 H 1.08003 * 119.99994 * 179.97438 * 2 1 3 33 33 H 0.96709 * 114.00130 * 60.00492 * 5 3 2 34 34 H 1.09000 * 109.45753 * 305.84866 * 11 10 9 35 35 H 1.08995 * 109.46317 * 65.82009 * 11 10 9 36 36 H 1.08996 * 109.50827 * 180.87396 * 12 11 10 37 37 H 1.09003 * 109.53848 * 60.77528 * 12 11 10 38 38 H 1.08999 * 109.51814 * 297.74957 * 13 12 11 39 39 H 1.08990 * 109.52202 * 177.56061 * 13 12 11 40 40 H 0.96995 * 120.00391 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.46169 * 294.17748 * 24 10 9 42 42 H 1.08991 * 109.46373 * 54.15448 * 24 10 9 43 43 H 1.08995 * 109.47134 * 24.76220 * 26 25 9 44 44 H 1.08995 * 109.47265 * 144.76723 * 26 25 9 45 45 H 1.08993 * 109.46998 * 305.05010 * 27 26 25 46 46 H 1.09005 * 109.46791 * 65.04863 * 27 26 25 47 47 H 1.08999 * 109.47008 * 179.97438 * 29 28 27 48 48 H 1.08996 * 109.47224 * 300.00197 * 29 28 27 49 49 H 1.09003 * 109.46949 * 60.00170 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 2.6212 1.4027 -0.9315 5 8 1.1393 2.3887 0.1174 6 6 3.0204 1.3327 1.1638 7 7 2.7092 1.5200 2.4151 8 7 3.7676 1.4794 3.1433 9 6 4.8205 1.2719 2.3882 10 7 6.1348 1.1731 2.8163 11 6 6.7708 2.4955 2.8723 12 6 8.2556 2.3352 3.2066 13 6 8.3962 1.6231 4.5549 14 6 7.6838 0.2694 4.4850 15 1 8.1608 -0.3542 3.7290 16 6 7.7666 -0.4124 5.8264 17 1 6.8625 -0.6639 6.3611 18 6 8.9965 -0.7154 6.3709 19 7 10.0974 -0.4089 5.7200 20 14 9.0992 -1.5613 8.0332 21 1 8.4043 -2.8720 7.9654 22 1 10.5241 -1.7742 8.3933 23 1 8.4508 -0.7099 9.0628 24 6 6.2156 0.4897 4.1136 25 7 4.3769 1.1719 1.1016 26 6 5.1861 0.9406 -0.0975 27 6 5.5190 2.2817 -0.7545 28 8 6.2070 2.0513 -1.9856 29 6 6.5664 3.2456 -2.6830 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9353 0.0045 32 1 1.8500 -0.9353 0.0004 33 1 0.6074 2.3663 0.9247 34 1 6.6674 2.9894 1.9061 35 1 6.2884 3.0983 3.6416 36 1 8.7241 3.3176 3.2634 37 1 8.7422 1.7443 2.4306 38 1 7.9444 2.2325 5.3375 39 1 9.4520 1.4681 4.7766 40 1 10.9627 -0.6217 6.1032 41 1 5.7357 1.1020 4.8771 42 1 5.7091 -0.4732 4.0490 43 1 6.1097 0.4327 0.1799 44 1 4.6273 0.3213 -0.7990 45 1 4.5971 2.8291 -0.9504 46 1 6.1535 2.8655 -0.0875 47 1 7.0846 2.9854 -3.6059 48 1 5.6664 3.8134 -2.9189 49 1 7.2227 3.8490 -2.0559 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355675729.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:09 Heat of formation + Delta-G solvation = -4.704502 kcal Electronic energy + Delta-G solvation = -30372.728435 eV Core-core repulsion = 26336.477882 eV Total energy + Delta-G solvation = -4036.250553 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.22267 -40.05696 -39.12930 -38.87434 -36.39501 -35.69031 -33.86667 -33.60410 -31.86578 -31.16802 -30.69100 -27.62150 -27.26779 -27.02707 -25.51158 -24.63745 -23.40309 -22.55986 -21.92005 -20.91863 -20.38799 -19.05584 -18.43293 -18.03783 -17.60672 -17.26861 -17.16739 -16.93919 -16.78826 -16.45751 -15.99411 -15.86342 -15.54230 -15.26735 -14.61721 -14.54458 -14.47154 -14.26586 -13.98372 -13.58948 -13.48266 -13.43032 -12.87918 -12.83024 -12.77764 -12.69712 -12.61371 -12.40504 -12.33272 -11.98134 -11.84787 -11.81326 -11.67473 -11.43608 -11.30866 -11.10943 -10.83965 -10.77497 -10.51521 -10.42747 -10.38680 -9.61935 -8.10454 -6.23585 0.47755 0.90160 1.30114 1.42660 1.43211 1.51021 1.62064 2.37228 2.49665 2.86114 3.10706 3.17408 3.30789 3.48426 3.71325 3.74743 3.80494 3.86990 4.02457 4.09012 4.12597 4.28311 4.32067 4.35360 4.41068 4.48013 4.52014 4.53861 4.60728 4.67428 4.76132 4.83313 4.85704 4.90807 4.97258 4.98944 5.04131 5.24937 5.36108 5.49434 5.59744 5.61856 5.66867 5.69094 5.97330 5.99909 6.10589 6.19455 6.36487 6.44435 6.84893 7.43926 7.54062 8.94276 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012456 B = 0.003294 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.395931 B = 8499.104397 C =10051.467764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.210 4.210 3 C 0.239 3.761 4 H 0.142 0.858 5 O -0.545 6.545 6 C 0.156 3.844 7 N -0.305 5.305 8 N -0.349 5.349 9 C 0.360 3.640 10 N -0.461 5.461 11 C 0.077 3.923 12 C -0.105 4.105 13 C -0.106 4.106 14 C 0.059 3.941 15 H 0.008 0.992 16 C -0.540 4.540 17 H 0.047 0.953 18 C 0.022 3.978 19 N -0.910 5.910 20 Si 0.951 3.049 21 H -0.274 1.274 22 H -0.280 1.280 23 H -0.274 1.274 24 C 0.103 3.897 25 N -0.455 5.455 26 C 0.106 3.894 27 C 0.057 3.943 28 O -0.398 6.398 29 C 0.026 3.974 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.395 0.605 34 H 0.087 0.913 35 H 0.033 0.967 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.025 0.975 39 H 0.068 0.932 40 H 0.263 0.737 41 H 0.028 0.972 42 H 0.048 0.952 43 H 0.107 0.893 44 H 0.129 0.871 45 H 0.065 0.935 46 H 0.051 0.949 47 H 0.105 0.895 48 H 0.054 0.946 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.378 6.484 -19.541 24.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.229 4.229 3 C 0.176 3.824 4 H 0.159 0.841 5 O -0.351 6.351 6 C -0.113 4.113 7 N -0.145 5.145 8 N -0.192 5.192 9 C 0.003 3.997 10 N -0.186 5.186 11 C -0.050 4.050 12 C -0.142 4.142 13 C -0.145 4.145 14 C 0.040 3.960 15 H 0.026 0.974 16 C -0.579 4.579 17 H 0.065 0.935 18 C -0.177 4.177 19 N -0.548 5.548 20 Si 0.777 3.223 21 H -0.199 1.199 22 H -0.205 1.205 23 H -0.199 1.199 24 C -0.023 4.023 25 N -0.150 5.150 26 C -0.016 4.016 27 C -0.021 4.021 28 O -0.317 6.317 29 C -0.070 4.070 30 H 0.136 0.864 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.246 0.754 34 H 0.105 0.895 35 H 0.052 0.948 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.043 0.957 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.047 0.953 42 H 0.067 0.933 43 H 0.125 0.875 44 H 0.147 0.853 45 H 0.083 0.917 46 H 0.069 0.931 47 H 0.123 0.877 48 H 0.073 0.927 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.446 6.446 -19.296 23.850 hybrid contribution 0.601 -0.397 1.433 1.604 sum -11.844 6.049 -17.864 22.271 Atomic orbital electron populations 1.24096 0.95341 1.03850 0.95367 1.23324 0.97365 0.97374 1.04869 1.19146 0.85642 0.86576 0.90994 0.84084 1.86548 1.53448 1.47687 1.47418 1.26172 0.82741 1.04267 0.98094 1.73792 1.21297 1.19074 1.00322 1.74654 0.95914 1.21834 1.26829 1.22714 0.92777 1.01420 0.82793 1.58843 1.06704 1.21471 1.31614 1.22185 0.95614 0.86139 1.01029 1.21595 0.93398 1.01068 0.98172 1.21508 1.02552 0.95842 0.94559 1.18589 0.88846 0.93854 0.94689 0.97354 1.21377 0.92397 1.39287 1.04827 0.93502 1.25597 0.95381 0.96121 1.00638 1.69980 0.97740 1.47707 1.39421 0.85724 0.77074 0.79139 0.80389 1.19915 1.20548 1.19916 1.21953 0.99631 0.95745 0.85014 1.46220 1.07256 1.53900 1.07629 1.21827 0.97464 0.98614 0.83701 1.22631 0.97128 0.95732 0.86621 1.87787 1.77047 1.32648 1.34189 1.22998 1.00213 0.86601 0.97186 0.86362 0.86596 0.86251 0.75422 0.89512 0.94825 0.89780 0.91677 0.95663 0.91307 0.92822 0.95312 0.93303 0.87458 0.85266 0.91657 0.93074 0.87655 0.92688 0.93511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 13.92 67.78 0.94 -1.03 16 2 C -0.21 -3.37 9.49 25.65 0.24 -3.13 16 3 C 0.24 4.28 3.89 29.10 0.11 4.40 16 4 H 0.14 1.93 7.42 -2.38 -0.02 1.91 16 5 O -0.54 -9.91 12.18 -148.98 -1.81 -11.73 16 6 C 0.16 4.11 6.92 137.64 0.95 5.06 16 7 N -0.30 -10.36 12.09 -49.54 -0.60 -10.96 16 8 N -0.35 -13.75 11.70 -58.00 -0.68 -14.43 16 9 C 0.36 12.73 6.71 260.11 1.74 14.48 16 10 N -0.46 -17.21 4.64 -706.16 -3.28 -20.49 16 11 C 0.08 2.57 5.40 86.33 0.47 3.03 16 12 C -0.10 -3.71 6.09 30.65 0.19 -3.52 16 13 C -0.11 -4.92 5.03 30.68 0.15 -4.76 16 14 C 0.06 2.98 2.26 -11.48 -0.03 2.96 16 15 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 16 C -0.54 -30.18 8.56 25.60 0.22 -29.96 16 17 H 0.05 2.63 7.74 -2.91 -0.02 2.61 16 18 C 0.02 1.23 5.30 84.65 0.45 1.68 16 19 N -0.91 -51.48 11.36 21.45 0.24 -51.24 16 20 Si 0.95 43.80 29.54 68.60 2.03 45.83 16 21 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 23 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 24 C 0.10 4.65 4.32 86.33 0.37 5.02 16 25 N -0.45 -12.30 2.81 -514.86 -1.45 -13.75 16 26 C 0.11 2.15 6.09 86.38 0.53 2.67 16 27 C 0.06 1.02 6.26 71.98 0.45 1.47 16 28 O -0.40 -7.16 10.70 -148.98 -1.59 -8.75 16 29 C 0.03 0.32 11.01 113.37 1.25 1.57 16 30 H 0.12 1.25 8.06 -2.91 -0.02 1.22 16 31 H 0.12 1.33 6.55 -2.91 -0.02 1.32 16 32 H 0.12 1.90 8.06 -2.91 -0.02 1.87 16 33 H 0.39 6.24 8.20 -74.05 -0.61 5.63 16 34 H 0.09 2.40 6.83 -2.39 -0.02 2.38 16 35 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.07 3.56 6.16 -2.39 -0.01 3.54 16 40 H 0.26 14.16 8.31 -92.71 -0.77 13.38 16 41 H 0.03 1.37 8.06 -2.39 -0.02 1.35 16 42 H 0.05 2.29 8.10 -2.39 -0.02 2.27 16 43 H 0.11 2.49 8.11 -2.39 -0.02 2.47 16 44 H 0.13 1.89 7.77 -2.39 -0.02 1.87 16 45 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.05 1.02 6.87 -2.38 -0.02 1.00 16 47 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 49 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -68.53 397.10 1.24 -67.28 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.34 Total: 18.28 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 8.04 Total: -0.06 kcal Atomic # 7 Polarization: -105.10 SS G_CDS: -5.76 Total: -110.86 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -3.41 Total: -20.48 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -68.53 1.24 -67.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355675729.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.580 kcal (2) G-P(sol) polarization free energy of solvation -68.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds