Wall clock time and date at job start Tue Mar 31 2020 19:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00441 * 2 1 4 4 H 1.09004 * 109.46647 * 359.97438 * 3 2 1 5 5 O 1.42894 * 109.47121 * 240.00201 * 3 2 1 6 6 C 1.50695 * 109.47237 * 120.00027 * 3 2 1 7 7 N 1.30291 * 126.35191 * 74.95785 * 6 3 2 8 8 N 1.28523 * 110.05981 * 180.02562 * 7 6 3 9 9 C 1.31217 * 109.85850 * 359.74984 * 8 7 6 10 10 N 1.38587 * 126.47323 * 180.25475 * 9 8 7 11 11 C 1.46846 * 111.00101 * 299.24927 * 10 9 8 12 12 C 1.53030 * 109.52494 * 185.84051 * 11 10 9 13 13 C 1.53127 * 109.27585 * 300.82281 * 12 11 10 14 14 C 1.53112 * 109.16166 * 57.65646 * 13 12 11 15 15 H 1.08999 * 109.50826 * 62.28075 * 14 13 12 16 16 C 1.50705 * 109.50369 * 182.40484 * 14 13 12 17 17 H 1.08000 * 119.99944 * 119.79999 * 16 14 13 18 18 C 1.37877 * 119.99914 * 299.79988 * 16 14 13 19 19 N 1.31511 * 119.99631 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 119.99959 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47027 * 90.00194 * 20 18 16 22 22 H 1.48498 * 109.47141 * 210.00035 * 20 18 16 23 23 H 1.48497 * 109.47045 * 330.00256 * 20 18 16 24 24 C 1.46842 * 110.99782 * 63.46286 * 10 9 8 25 25 N 1.36448 * 107.05565 * 0.40011 * 9 8 7 26 26 C 1.46497 * 127.13960 * 179.87803 * 25 9 8 27 27 C 1.53004 * 109.46817 * 264.50733 * 26 25 9 28 28 O 1.42906 * 109.46974 * 175.18887 * 27 26 25 29 29 C 1.42895 * 114.00032 * 180.02562 * 28 27 26 30 30 H 1.08005 * 119.99916 * 180.02562 * 1 2 3 31 31 H 1.07996 * 119.99781 * 359.97438 * 1 2 3 32 32 H 1.08011 * 119.99892 * 179.97438 * 2 1 3 33 33 H 0.96699 * 114.00014 * 299.99359 * 5 3 2 34 34 H 1.09000 * 109.46443 * 305.85884 * 11 10 9 35 35 H 1.08999 * 109.46258 * 65.82205 * 11 10 9 36 36 H 1.09001 * 109.50738 * 180.88268 * 12 11 10 37 37 H 1.09001 * 109.53810 * 60.77944 * 12 11 10 38 38 H 1.09000 * 109.51820 * 297.74580 * 13 12 11 39 39 H 1.09006 * 109.51933 * 177.56066 * 13 12 11 40 40 H 0.97006 * 119.99700 * 180.02562 * 19 18 16 41 41 H 1.09004 * 109.46367 * 294.17222 * 24 10 9 42 42 H 1.08996 * 109.46450 * 54.15155 * 24 10 9 43 43 H 1.09001 * 109.47063 * 144.51453 * 26 25 9 44 44 H 1.08996 * 109.46926 * 24.51056 * 26 25 9 45 45 H 1.08995 * 109.47427 * 295.19108 * 27 26 25 46 46 H 1.09007 * 109.46875 * 55.19265 * 27 26 25 47 47 H 1.08994 * 109.47593 * 180.02562 * 29 28 27 48 48 H 1.09006 * 109.47221 * 299.99854 * 29 28 27 49 49 H 1.09004 * 109.47750 * 59.99682 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3552 2.1335 -0.0005 5 8 2.8850 1.3807 -1.1667 6 6 2.9300 1.3848 1.2304 7 7 4.0449 0.7418 1.4329 8 7 4.5233 1.0417 2.5874 9 6 3.7355 1.9033 3.1863 10 7 3.9262 2.4602 4.4409 11 6 3.9553 1.4218 5.4788 12 6 4.0207 2.0796 6.8589 13 6 5.2780 2.9494 6.9453 14 6 5.2461 3.9916 5.8241 15 1 4.3822 4.6429 5.9570 16 6 6.5083 4.8140 5.8655 17 1 7.1726 4.8269 5.0141 18 6 6.8150 5.5499 6.9904 19 7 6.0063 5.5337 8.0274 20 14 8.3799 6.5686 7.0421 21 1 8.0990 7.9336 6.5291 22 1 8.8673 6.6565 8.4420 23 1 9.4173 5.9256 6.1962 24 6 5.1452 3.2783 4.4738 25 7 2.6914 2.1450 2.3418 26 6 1.5540 3.0385 2.5746 27 6 0.3761 2.2318 3.1248 28 8 -0.6945 3.1182 3.4571 29 6 -1.8499 2.4625 3.9834 30 1 -0.5400 -0.9354 0.0004 31 1 -0.5399 0.9353 0.0004 32 1 1.8500 -0.9354 0.0004 33 1 3.5405 0.6728 -1.2329 34 1 3.0538 0.8130 5.4089 35 1 4.8319 0.7899 5.3357 36 1 4.0581 1.3084 7.6283 37 1 3.1376 2.7007 7.0089 38 1 6.1628 2.3224 6.8349 39 1 5.3061 3.4540 7.9111 40 1 6.2219 6.0517 8.8187 41 1 6.0163 2.6377 4.3355 42 1 5.1078 4.0181 3.6743 43 1 1.2642 3.5101 1.6356 44 1 1.8366 3.8063 3.2948 45 1 0.0385 1.5211 2.3706 46 1 0.6911 1.6918 4.0178 47 1 -2.6166 3.2033 4.2099 48 1 -2.2339 1.7563 3.2472 49 1 -1.5809 1.9274 4.8942 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355675732.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:14 Heat of formation + Delta-G solvation = 13.114220 kcal Electronic energy + Delta-G solvation = -30482.657964 eV Core-core repulsion = 26447.180089 eV Total energy + Delta-G solvation = -4035.477875 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.99401 -38.50988 -38.32432 -37.74209 -35.28511 -33.94721 -33.61314 -31.93917 -30.20068 -30.04452 -29.38898 -26.67432 -26.21525 -25.05375 -24.06764 -23.56933 -21.74124 -21.53481 -20.70058 -20.44870 -18.67504 -17.86176 -17.03420 -16.86407 -16.72172 -16.31820 -15.95897 -15.69051 -15.57812 -15.02518 -14.83382 -14.51052 -14.08463 -13.91490 -13.53293 -13.42070 -13.03210 -12.82817 -12.66698 -12.60960 -12.48737 -12.07817 -11.88859 -11.73533 -11.69369 -11.51947 -10.98737 -10.83609 -10.79662 -10.70740 -10.50965 -10.24812 -10.19945 -10.12600 -9.96127 -9.95509 -9.61760 -9.30409 -8.96025 -8.75817 -8.42400 -8.23744 -6.02949 -4.09048 1.51126 1.85843 2.10534 2.87037 3.29867 3.36671 3.40230 3.43851 3.97595 4.13829 4.17673 4.34819 4.42520 4.45532 4.54860 4.61006 4.88208 4.93036 5.02316 5.05906 5.17309 5.27314 5.29738 5.36734 5.38499 5.41374 5.51218 5.67970 5.77201 5.89721 5.98918 6.07393 6.14240 6.18911 6.31661 6.33776 6.51371 6.58811 6.64366 6.73158 6.81500 7.00999 7.23256 7.26285 7.35272 7.64671 7.70922 7.96132 8.07529 8.38592 8.76560 8.93863 9.55777 11.03246 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013393 B = 0.003276 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.142239 B = 8545.227790 C = 9557.430267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.182 4.182 3 C 0.234 3.766 4 H 0.115 0.885 5 O -0.538 6.538 6 C 0.133 3.867 7 N -0.277 5.277 8 N -0.310 5.310 9 C 0.376 3.624 10 N -0.470 5.470 11 C 0.077 3.923 12 C -0.116 4.116 13 C -0.113 4.113 14 C 0.058 3.942 15 H 0.036 0.964 16 C -0.516 4.516 17 H 0.055 0.945 18 C 0.065 3.935 19 N -0.888 5.888 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.079 3.921 25 N -0.457 5.457 26 C 0.110 3.890 27 C 0.052 3.948 28 O -0.383 6.383 29 C 0.034 3.966 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.122 0.878 33 H 0.390 0.610 34 H 0.056 0.944 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.036 0.964 39 H 0.095 0.905 40 H 0.260 0.740 41 H 0.042 0.958 42 H 0.060 0.940 43 H 0.099 0.901 44 H 0.121 0.879 45 H 0.054 0.946 46 H 0.060 0.940 47 H 0.090 0.910 48 H 0.041 0.959 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.323 -9.958 -11.225 22.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.201 4.201 3 C 0.172 3.828 4 H 0.132 0.868 5 O -0.343 6.343 6 C -0.134 4.134 7 N -0.119 5.119 8 N -0.154 5.154 9 C 0.020 3.980 10 N -0.197 5.197 11 C -0.050 4.050 12 C -0.154 4.154 13 C -0.151 4.151 14 C 0.039 3.961 15 H 0.054 0.946 16 C -0.554 4.554 17 H 0.073 0.927 18 C -0.137 4.137 19 N -0.526 5.526 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.046 4.046 25 N -0.152 5.152 26 C -0.013 4.013 27 C -0.026 4.026 28 O -0.301 6.301 29 C -0.063 4.063 30 H 0.125 0.875 31 H 0.119 0.881 32 H 0.140 0.860 33 H 0.239 0.761 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.054 0.946 39 H 0.113 0.887 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.117 0.883 44 H 0.139 0.861 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.109 0.891 48 H 0.060 0.940 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.916 -9.754 -11.323 21.833 hybrid contribution 0.606 0.149 0.472 0.782 sum -15.311 -9.605 -10.851 21.081 Atomic orbital electron populations 1.23938 0.95526 1.02544 0.98243 1.23466 0.96609 0.98522 1.01535 1.19049 0.88399 0.96571 0.78757 0.86771 1.86604 1.51815 1.55559 1.40348 1.25430 0.99102 0.96698 0.92213 1.73856 1.06703 1.20721 1.10610 1.74714 1.23836 1.14735 1.02078 1.22828 0.86458 0.95888 0.92849 1.59008 1.42233 1.22015 0.96402 1.22085 1.00164 0.91524 0.91245 1.21718 1.01594 0.99143 0.92971 1.21701 0.92953 0.96229 1.04217 1.18701 0.97640 0.92633 0.87115 0.94582 1.21074 1.06434 1.27152 1.00773 0.92651 1.24905 0.96733 0.96453 0.95567 1.69879 1.36735 1.41160 1.04853 0.86593 0.83606 0.80606 0.77212 1.20686 1.21217 1.19893 1.22494 0.85736 0.94206 1.02181 1.46174 1.19579 1.34998 1.14478 1.21593 0.83338 0.92131 1.04257 1.22710 0.87526 0.92425 0.99909 1.87829 1.24588 1.33608 1.84081 1.22781 0.87531 0.98382 0.97585 0.87535 0.88135 0.86011 0.76082 0.92561 0.93495 0.92612 0.91885 0.94554 0.88674 0.92965 0.93975 0.92163 0.88308 0.86092 0.92806 0.92174 0.89121 0.94021 0.93686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 13.96 29.02 0.40 -0.69 16 2 C -0.18 -1.54 9.10 -36.03 -0.33 -1.87 16 3 C 0.23 2.42 3.75 -29.04 -0.11 2.31 16 4 H 0.11 1.02 6.72 -51.93 -0.35 0.67 16 5 O -0.54 -5.91 13.31 -35.23 -0.47 -6.38 16 6 C 0.13 1.86 6.91 -154.01 -1.06 0.79 16 7 N -0.28 -4.69 12.10 32.99 0.40 -4.30 16 8 N -0.31 -5.96 12.19 30.31 0.37 -5.59 16 9 C 0.38 6.68 6.41 -318.87 -2.05 4.63 16 10 N -0.47 -8.75 4.64 -174.55 -0.81 -9.56 16 11 C 0.08 1.35 5.37 -3.84 -0.02 1.33 16 12 C -0.12 -2.14 6.09 -26.65 -0.16 -2.30 16 13 C -0.11 -2.56 5.03 -26.61 -0.13 -2.69 16 14 C 0.06 1.41 2.26 -91.69 -0.21 1.20 16 15 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 16 C -0.52 -13.88 8.56 -34.44 -0.29 -14.17 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 19 N -0.89 -24.61 11.36 55.43 0.63 -23.98 16 20 Si 0.89 21.07 29.54 -169.99 -5.02 16.04 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 C 0.08 1.71 4.61 -3.83 -0.02 1.69 16 25 N -0.46 -6.63 2.81 -114.08 -0.32 -6.95 16 26 C 0.11 1.29 6.27 -4.04 -0.03 1.27 16 27 C 0.05 0.54 6.26 37.16 0.23 0.77 16 28 O -0.38 -4.08 10.70 -35.23 -0.38 -4.46 16 29 C 0.03 0.25 11.01 101.05 1.11 1.37 16 30 H 0.11 0.57 8.06 -52.48 -0.42 0.14 16 31 H 0.10 0.57 7.83 -52.49 -0.41 0.16 16 32 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 33 H 0.39 3.48 8.96 45.56 0.41 3.88 16 34 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 2.40 6.16 -51.93 -0.32 2.08 16 40 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 41 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.06 1.32 8.10 -51.93 -0.42 0.90 16 43 H 0.10 0.94 7.31 -51.93 -0.38 0.56 16 44 H 0.12 1.61 8.10 -51.93 -0.42 1.19 16 45 H 0.05 0.47 7.77 -51.93 -0.40 0.07 16 46 H 0.06 0.70 8.14 -51.92 -0.42 0.27 16 47 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 49 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 401.55 15.07 6.05 6.05 Total: -1.00 -31.03 401.55 -9.63 -40.66 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -7.33 Total: 3.15 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -2.75 Total: -4.70 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: 0.27 Total: -50.37 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -0.85 Total: -10.84 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.03 -9.63 -40.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355675732.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.778 kcal (2) G-P(sol) polarization free energy of solvation -31.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds