Wall clock time and date at job start Tue Mar 31 2020 19:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00441 * 2 1 4 4 H 1.09004 * 109.46647 * 359.97438 * 3 2 1 5 5 O 1.42894 * 109.47121 * 240.00201 * 3 2 1 6 6 C 1.50695 * 109.47237 * 120.00027 * 3 2 1 7 7 N 1.30291 * 126.35191 * 74.95785 * 6 3 2 8 8 N 1.28523 * 110.05981 * 180.02562 * 7 6 3 9 9 C 1.31217 * 109.85850 * 359.74984 * 8 7 6 10 10 N 1.38587 * 126.47323 * 180.25475 * 9 8 7 11 11 C 1.46846 * 111.00101 * 299.24927 * 10 9 8 12 12 C 1.53030 * 109.52494 * 185.84051 * 11 10 9 13 13 C 1.53127 * 109.27585 * 300.82281 * 12 11 10 14 14 C 1.53112 * 109.16166 * 57.65646 * 13 12 11 15 15 H 1.08999 * 109.50826 * 62.28075 * 14 13 12 16 16 C 1.50705 * 109.50369 * 182.40484 * 14 13 12 17 17 H 1.08000 * 119.99944 * 119.79999 * 16 14 13 18 18 C 1.37877 * 119.99914 * 299.79988 * 16 14 13 19 19 N 1.31511 * 119.99631 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 119.99959 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47027 * 90.00194 * 20 18 16 22 22 H 1.48498 * 109.47141 * 210.00035 * 20 18 16 23 23 H 1.48497 * 109.47045 * 330.00256 * 20 18 16 24 24 C 1.46842 * 110.99782 * 63.46286 * 10 9 8 25 25 N 1.36448 * 107.05565 * 0.40011 * 9 8 7 26 26 C 1.46497 * 127.13960 * 179.87803 * 25 9 8 27 27 C 1.53004 * 109.46817 * 264.50733 * 26 25 9 28 28 O 1.42906 * 109.46974 * 175.18887 * 27 26 25 29 29 C 1.42895 * 114.00032 * 180.02562 * 28 27 26 30 30 H 1.08005 * 119.99916 * 180.02562 * 1 2 3 31 31 H 1.07996 * 119.99781 * 359.97438 * 1 2 3 32 32 H 1.08011 * 119.99892 * 179.97438 * 2 1 3 33 33 H 0.96699 * 114.00014 * 299.99359 * 5 3 2 34 34 H 1.09000 * 109.46443 * 305.85884 * 11 10 9 35 35 H 1.08999 * 109.46258 * 65.82205 * 11 10 9 36 36 H 1.09001 * 109.50738 * 180.88268 * 12 11 10 37 37 H 1.09001 * 109.53810 * 60.77944 * 12 11 10 38 38 H 1.09000 * 109.51820 * 297.74580 * 13 12 11 39 39 H 1.09006 * 109.51933 * 177.56066 * 13 12 11 40 40 H 0.97006 * 119.99700 * 180.02562 * 19 18 16 41 41 H 1.09004 * 109.46367 * 294.17222 * 24 10 9 42 42 H 1.08996 * 109.46450 * 54.15155 * 24 10 9 43 43 H 1.09001 * 109.47063 * 144.51453 * 26 25 9 44 44 H 1.08996 * 109.46926 * 24.51056 * 26 25 9 45 45 H 1.08995 * 109.47427 * 295.19108 * 27 26 25 46 46 H 1.09007 * 109.46875 * 55.19265 * 27 26 25 47 47 H 1.08994 * 109.47593 * 180.02562 * 29 28 27 48 48 H 1.09006 * 109.47221 * 299.99854 * 29 28 27 49 49 H 1.09004 * 109.47750 * 59.99682 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3552 2.1335 -0.0005 5 8 2.8850 1.3807 -1.1667 6 6 2.9300 1.3848 1.2304 7 7 4.0449 0.7418 1.4329 8 7 4.5233 1.0417 2.5874 9 6 3.7355 1.9033 3.1863 10 7 3.9262 2.4602 4.4409 11 6 3.9553 1.4218 5.4788 12 6 4.0207 2.0796 6.8589 13 6 5.2780 2.9494 6.9453 14 6 5.2461 3.9916 5.8241 15 1 4.3822 4.6429 5.9570 16 6 6.5083 4.8140 5.8655 17 1 7.1726 4.8269 5.0141 18 6 6.8150 5.5499 6.9904 19 7 6.0063 5.5337 8.0274 20 14 8.3799 6.5686 7.0421 21 1 8.0990 7.9336 6.5291 22 1 8.8673 6.6565 8.4420 23 1 9.4173 5.9256 6.1962 24 6 5.1452 3.2783 4.4738 25 7 2.6914 2.1450 2.3418 26 6 1.5540 3.0385 2.5746 27 6 0.3761 2.2318 3.1248 28 8 -0.6945 3.1182 3.4571 29 6 -1.8499 2.4625 3.9834 30 1 -0.5400 -0.9354 0.0004 31 1 -0.5399 0.9353 0.0004 32 1 1.8500 -0.9354 0.0004 33 1 3.5405 0.6728 -1.2329 34 1 3.0538 0.8130 5.4089 35 1 4.8319 0.7899 5.3357 36 1 4.0581 1.3084 7.6283 37 1 3.1376 2.7007 7.0089 38 1 6.1628 2.3224 6.8349 39 1 5.3061 3.4540 7.9111 40 1 6.2219 6.0517 8.8187 41 1 6.0163 2.6377 4.3355 42 1 5.1078 4.0181 3.6743 43 1 1.2642 3.5101 1.6356 44 1 1.8366 3.8063 3.2948 45 1 0.0385 1.5211 2.3706 46 1 0.6911 1.6918 4.0178 47 1 -2.6166 3.2033 4.2099 48 1 -2.2339 1.7563 3.2472 49 1 -1.5809 1.9274 4.8942 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355675732.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:13 Heat of formation + Delta-G solvation = -6.868678 kcal Electronic energy + Delta-G solvation = -30483.524487 eV Core-core repulsion = 26447.180089 eV Total energy + Delta-G solvation = -4036.344399 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.23210 -40.02746 -39.10903 -38.64026 -36.38312 -35.70772 -34.35435 -33.63568 -31.87026 -31.15220 -30.59735 -27.42391 -27.11556 -27.01533 -25.51552 -24.61030 -23.37924 -22.69129 -21.92732 -21.26242 -20.36290 -19.05855 -18.40368 -17.86811 -17.71370 -17.42952 -17.10358 -16.84834 -16.54888 -16.49765 -15.94780 -15.66486 -15.52883 -15.28186 -14.64544 -14.56741 -14.44290 -14.27395 -14.05816 -13.69556 -13.52629 -13.42109 -12.91857 -12.88530 -12.75387 -12.72926 -12.62122 -12.46497 -12.31514 -11.97570 -11.87244 -11.81687 -11.50476 -11.45608 -11.31402 -11.10996 -10.80920 -10.79770 -10.59529 -10.42945 -10.15470 -9.84872 -8.11023 -6.24302 0.43600 0.93427 1.18150 1.40905 1.42358 1.52131 1.61523 2.38277 2.50802 2.85153 3.16874 3.18779 3.33543 3.53494 3.64856 3.76473 3.82357 3.82970 4.04726 4.10608 4.14820 4.22350 4.28960 4.38272 4.45620 4.48156 4.52988 4.54523 4.59887 4.68308 4.77905 4.81357 4.86651 4.89201 4.96814 4.97662 5.04857 5.25498 5.36368 5.48281 5.57172 5.61346 5.62478 5.69123 5.96787 6.03256 6.09941 6.20907 6.35654 6.48752 6.84300 7.43291 7.50080 8.93813 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013393 B = 0.003276 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.142239 B = 8545.227790 C = 9557.430267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.205 4.205 3 C 0.237 3.763 4 H 0.135 0.865 5 O -0.549 6.549 6 C 0.157 3.843 7 N -0.306 5.306 8 N -0.341 5.341 9 C 0.355 3.645 10 N -0.464 5.464 11 C 0.081 3.919 12 C -0.105 4.105 13 C -0.106 4.106 14 C 0.061 3.939 15 H 0.009 0.991 16 C -0.540 4.540 17 H 0.046 0.954 18 C 0.022 3.978 19 N -0.909 5.909 20 Si 0.951 3.049 21 H -0.275 1.275 22 H -0.280 1.280 23 H -0.273 1.273 24 C 0.099 3.901 25 N -0.451 5.451 26 C 0.105 3.895 27 C 0.062 3.938 28 O -0.401 6.401 29 C 0.026 3.974 30 H 0.123 0.877 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.396 0.604 34 H 0.082 0.918 35 H 0.036 0.964 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.024 0.976 39 H 0.068 0.932 40 H 0.263 0.737 41 H 0.024 0.976 42 H 0.049 0.951 43 H 0.127 0.873 44 H 0.101 0.899 45 H 0.076 0.924 46 H 0.045 0.955 47 H 0.102 0.898 48 H 0.061 0.939 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.580 -10.629 -12.395 24.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.225 4.225 3 C 0.175 3.825 4 H 0.152 0.848 5 O -0.355 6.355 6 C -0.112 4.112 7 N -0.147 5.147 8 N -0.185 5.185 9 C -0.002 4.002 10 N -0.190 5.190 11 C -0.045 4.045 12 C -0.142 4.142 13 C -0.144 4.144 14 C 0.042 3.958 15 H 0.027 0.973 16 C -0.578 4.578 17 H 0.064 0.936 18 C -0.178 4.178 19 N -0.548 5.548 20 Si 0.777 3.223 21 H -0.201 1.201 22 H -0.205 1.205 23 H -0.198 1.198 24 C -0.028 4.028 25 N -0.145 5.145 26 C -0.017 4.017 27 C -0.016 4.016 28 O -0.320 6.320 29 C -0.069 4.069 30 H 0.141 0.859 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.247 0.753 34 H 0.101 0.899 35 H 0.055 0.945 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.043 0.957 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.043 0.957 42 H 0.068 0.932 43 H 0.145 0.855 44 H 0.119 0.881 45 H 0.094 0.906 46 H 0.063 0.937 47 H 0.120 0.880 48 H 0.080 0.920 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -18.195 -10.435 -12.501 24.418 hybrid contribution 1.191 0.349 0.755 1.452 sum -17.004 -10.086 -11.747 22.997 Atomic orbital electron populations 1.24224 0.94769 1.04116 0.94708 1.23292 0.97213 0.97244 1.04710 1.19381 0.87866 0.98567 0.76719 0.84784 1.86581 1.52271 1.56237 1.40381 1.26294 0.98085 0.94344 0.92496 1.73791 1.08367 1.22381 1.10131 1.74614 1.25058 1.15600 1.03219 1.22649 0.87841 0.96809 0.92867 1.58889 1.40228 1.22374 0.97530 1.22071 1.00946 0.91188 0.90315 1.21597 0.99038 0.99120 0.94486 1.21501 0.94813 0.96084 1.01991 1.18570 0.95433 0.92674 0.89162 0.97253 1.21391 1.07471 1.28199 1.00753 0.93552 1.25602 0.99531 0.97418 0.95223 1.69993 1.38023 1.41598 1.05163 0.85660 0.80117 0.79154 0.77346 1.20106 1.20536 1.19805 1.22051 0.86628 0.93905 1.00189 1.46276 1.19491 1.34929 1.13839 1.21808 0.82945 0.91604 1.05347 1.22567 0.87062 0.92139 0.99785 1.87804 1.25326 1.34489 1.84379 1.22993 0.86734 0.99161 0.98056 0.85853 0.86605 0.86489 0.75304 0.89934 0.94538 0.89903 0.91883 0.95675 0.91339 0.92825 0.95735 0.93208 0.85550 0.88076 0.90585 0.93677 0.87952 0.92012 0.93837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 13.96 67.78 0.95 -0.35 16 2 C -0.21 -2.90 9.10 25.65 0.23 -2.67 16 3 C 0.24 4.31 3.75 29.10 0.11 4.42 16 4 H 0.13 1.89 6.72 -2.39 -0.02 1.87 16 5 O -0.55 -11.11 13.31 -148.98 -1.98 -13.09 16 6 C 0.16 4.17 6.91 137.64 0.95 5.12 16 7 N -0.31 -10.30 12.10 -49.54 -0.60 -10.90 16 8 N -0.34 -13.26 12.19 -58.00 -0.71 -13.97 16 9 C 0.36 12.68 6.41 260.11 1.67 14.35 16 10 N -0.46 -17.55 4.64 -706.17 -3.27 -20.83 16 11 C 0.08 2.84 5.37 86.32 0.46 3.31 16 12 C -0.10 -3.82 6.09 30.65 0.19 -3.63 16 13 C -0.11 -4.93 5.03 30.67 0.15 -4.78 16 14 C 0.06 3.05 2.26 -11.49 -0.03 3.03 16 15 H 0.01 0.51 8.14 -2.39 -0.02 0.50 16 16 C -0.54 -30.07 8.56 25.60 0.22 -29.85 16 17 H 0.05 2.60 7.74 -2.91 -0.02 2.57 16 18 C 0.02 1.21 5.30 84.66 0.45 1.66 16 19 N -0.91 -51.47 11.36 21.45 0.24 -51.22 16 20 Si 0.95 43.80 29.54 68.60 2.03 45.83 16 21 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 23 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 24 C 0.10 4.44 4.61 86.33 0.40 4.84 16 25 N -0.45 -12.64 2.81 -514.85 -1.45 -14.08 16 26 C 0.11 2.30 6.27 86.38 0.54 2.85 16 27 C 0.06 1.14 6.26 71.98 0.45 1.59 16 28 O -0.40 -7.64 10.70 -148.98 -1.59 -9.23 16 29 C 0.03 0.33 11.01 113.37 1.25 1.58 16 30 H 0.12 0.76 8.06 -2.91 -0.02 0.74 16 31 H 0.12 0.73 7.83 -2.91 -0.02 0.71 16 32 H 0.12 1.76 8.06 -2.90 -0.02 1.74 16 33 H 0.40 6.70 8.96 -74.06 -0.66 6.04 16 34 H 0.08 2.48 8.10 -2.39 -0.02 2.46 16 35 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.07 3.57 6.16 -2.38 -0.01 3.56 16 40 H 0.26 14.12 8.31 -92.70 -0.77 13.35 16 41 H 0.02 1.17 8.14 -2.38 -0.02 1.15 16 42 H 0.05 2.29 8.10 -2.39 -0.02 2.27 16 43 H 0.13 2.05 7.31 -2.39 -0.02 2.03 16 44 H 0.10 2.67 8.10 -2.39 -0.02 2.65 16 45 H 0.08 1.05 7.77 -2.39 -0.02 1.03 16 46 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 47 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 49 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -69.21 401.55 0.94 -68.27 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 0.28 Total: 17.77 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 7.99 Total: 1.46 kcal Atomic # 7 Polarization: -105.22 SS G_CDS: -5.78 Total: -111.00 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -3.58 Total: -22.33 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -69.21 0.94 -68.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355675732.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.406 kcal (2) G-P(sol) polarization free energy of solvation -69.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds