Wall clock time and date at job start Tue Mar 31 2020 19:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50708 * 119.99613 * 2 1 4 4 N 1.46501 * 109.47101 * 121.56559 * 3 2 1 5 5 C 1.36448 * 127.13978 * 96.00211 * 4 3 2 6 6 N 1.38584 * 126.47048 * 359.97438 * 5 4 3 7 7 C 1.46897 * 111.00036 * 251.16282 * 6 5 4 8 8 C 1.50705 * 109.47027 * 293.20470 * 7 6 5 9 9 H 1.08001 * 119.99516 * 3.55489 * 8 7 6 10 10 C 1.37872 * 120.00093 * 183.55381 * 8 7 6 11 11 N 1.31516 * 120.00146 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99934 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.46724 * 60.00247 * 12 10 8 14 14 H 1.48501 * 109.46807 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47087 * 300.00142 * 12 10 8 16 16 C 1.46899 * 111.00062 * 127.20734 * 6 5 4 17 17 C 1.53002 * 109.47152 * 195.37447 * 16 6 5 18 18 O 1.42895 * 109.47182 * 65.91490 * 17 16 6 19 19 C 1.42895 * 114.00063 * 179.97438 * 18 17 16 20 20 N 1.31212 * 107.05571 * 180.02562 * 5 4 3 21 21 N 1.28529 * 109.86102 * 359.97438 * 20 5 4 22 22 C 1.30296 * 110.05054 * 0.02562 * 21 20 5 23 23 C 1.50708 * 126.34290 * 180.02562 * 22 21 20 24 24 O 1.42895 * 115.55315 * 108.68753 * 23 22 21 25 25 C 1.42907 * 113.99963 * 305.93040 * 24 23 22 26 26 C 1.52998 * 117.49516 * 322.97299 * 23 22 21 27 27 C 1.53000 * 60.00171 * 252.51784 * 26 23 22 28 28 H 1.07996 * 119.99667 * 179.97438 * 1 2 3 29 29 H 1.07998 * 120.00258 * 0.02562 * 1 2 3 30 30 H 1.07991 * 120.00089 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.46857 * 1.56446 * 3 2 1 32 32 H 1.08999 * 109.46683 * 241.56282 * 3 2 1 33 33 H 1.09001 * 109.47735 * 53.20576 * 7 6 5 34 34 H 1.09001 * 109.47179 * 173.20825 * 7 6 5 35 35 H 0.97003 * 119.99907 * 179.97438 * 11 10 8 36 36 H 1.09004 * 109.47021 * 315.37235 * 16 6 5 37 37 H 1.08997 * 109.46845 * 75.36902 * 16 6 5 38 38 H 1.09000 * 109.47044 * 185.91282 * 17 16 6 39 39 H 1.08996 * 109.46815 * 305.91318 * 17 16 6 40 40 H 1.08995 * 109.47682 * 300.00053 * 19 18 17 41 41 H 1.09006 * 109.46982 * 60.00314 * 19 18 17 42 42 H 1.09001 * 109.47580 * 179.97438 * 19 18 17 43 43 H 1.08996 * 109.46968 * 305.92840 * 25 24 23 44 44 H 1.09005 * 109.47038 * 65.92009 * 25 24 23 45 45 H 1.08994 * 109.47086 * 185.92498 * 25 24 23 46 46 H 1.08994 * 117.50446 * 0.02562 * 26 23 22 47 47 H 1.09006 * 117.49644 * 145.02470 * 26 23 22 48 48 H 1.09001 * 117.49780 * 252.51780 * 27 26 23 49 49 H 1.08992 * 117.50198 * 107.49133 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9338 1.3667 1.1769 5 6 4.2579 1.0432 1.2401 6 7 5.0457 0.5888 0.1944 7 6 5.3800 -0.8314 0.3658 8 6 6.2762 -0.9951 1.5663 9 1 6.5217 -0.1393 2.1776 10 6 6.7828 -2.2374 1.8841 11 7 6.4843 -3.2795 1.1394 12 14 7.8943 -2.4402 3.3718 13 1 7.1626 -2.0271 4.5962 14 1 8.3023 -3.8627 3.4945 15 1 9.1018 -1.5918 3.2067 16 6 6.2608 1.4030 0.0583 17 6 6.9042 1.1352 -1.3038 18 8 6.0390 1.6045 -2.3398 19 6 6.5490 1.4020 -3.6592 20 7 4.6441 1.2427 2.4781 21 7 3.6549 1.6657 3.1813 22 6 2.5877 1.7599 2.4399 23 6 1.2246 2.2182 2.8907 24 8 0.8171 3.5021 2.4137 25 6 1.7487 4.5489 2.6941 26 6 0.7690 1.8074 4.2923 27 6 0.1412 1.1513 3.0609 28 1 -0.5399 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9352 0.0004 31 1 1.3554 2.1334 0.0281 32 1 2.6689 1.3752 -0.9037 33 1 4.4650 -1.4048 0.5146 34 1 5.8950 -1.1934 -0.5241 35 1 6.8410 -4.1534 1.3628 36 1 6.0013 2.4588 0.1363 37 1 6.9634 1.1421 0.8497 38 1 7.8590 1.6575 -1.3636 39 1 7.0676 0.0643 -1.4242 40 1 7.4963 1.9301 -3.7676 41 1 6.7054 0.3366 -3.8287 42 1 5.8341 1.7843 -4.3878 43 1 1.9656 4.5658 3.7621 44 1 2.6703 4.3733 2.1390 45 1 1.3210 5.5057 2.3949 46 1 1.4552 1.2061 4.8885 47 1 0.1584 2.5167 4.8511 48 1 -0.8824 1.4289 2.8095 49 1 0.4143 0.1181 2.8469 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356214601.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:45 Heat of formation + Delta-G solvation = 67.438563 kcal Electronic energy + Delta-G solvation = -31210.533291 eV Core-core repulsion = 27177.411096 eV Total energy + Delta-G solvation = -4033.122195 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.43612 -38.80304 -37.87162 -36.30049 -35.82030 -34.96359 -32.56572 -32.32320 -29.98515 -28.60959 -26.82912 -26.76882 -26.32299 -25.71749 -23.50199 -22.90795 -22.59394 -21.67868 -20.44462 -19.68475 -19.35621 -17.53492 -16.72213 -16.23301 -16.07227 -16.02810 -15.68904 -15.35765 -15.07475 -14.98435 -14.52730 -14.44908 -14.35687 -14.06161 -13.64789 -13.33816 -13.16075 -12.76032 -12.20028 -12.10616 -11.69389 -11.67923 -11.58652 -11.43395 -11.35791 -11.12460 -11.08866 -11.06408 -10.87869 -10.72342 -10.58255 -10.42312 -10.15763 -10.02189 -9.65619 -9.61115 -9.44180 -9.32396 -9.20937 -8.44673 -8.40233 -7.74597 -6.05045 -4.09815 2.01707 2.25356 2.90824 3.23211 3.35293 3.38287 3.45105 3.46697 3.92152 4.21214 4.28929 4.46016 4.58510 4.74271 4.88718 4.95946 5.01899 5.29431 5.33580 5.37629 5.40853 5.42515 5.45076 5.55991 5.57643 5.64299 5.67551 5.71698 5.73783 5.84182 5.84746 5.88410 5.90421 6.00046 6.08466 6.11670 6.33827 6.53813 6.59120 6.60242 6.72301 6.92204 7.00603 7.25778 7.38385 7.50122 7.69467 7.94162 8.11726 8.22628 9.00764 9.38664 9.57399 11.02470 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009145 B = 0.004872 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.962260 B = 5745.657585 C = 7092.230963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.165 4.165 3 C 0.142 3.858 4 N -0.455 5.455 5 C 0.393 3.607 6 N -0.467 5.467 7 C 0.198 3.802 8 C -0.545 4.545 9 H 0.080 0.920 10 C 0.066 3.934 11 N -0.897 5.897 12 Si 0.892 3.108 13 H -0.275 1.275 14 H -0.289 1.289 15 H -0.276 1.276 16 C 0.077 3.923 17 C 0.070 3.930 18 O -0.383 6.383 19 C 0.033 3.967 20 N -0.294 5.294 21 N -0.276 5.276 22 C 0.161 3.839 23 C 0.121 3.879 24 O -0.345 6.345 25 C 0.033 3.967 26 C -0.166 4.166 27 C -0.138 4.138 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.118 0.882 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.026 0.974 34 H 0.049 0.951 35 H 0.262 0.738 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.048 0.952 39 H 0.064 0.936 40 H 0.033 0.967 41 H 0.039 0.961 42 H 0.077 0.923 43 H 0.050 0.950 44 H 0.041 0.959 45 H 0.087 0.913 46 H 0.110 0.890 47 H 0.107 0.893 48 H 0.108 0.892 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.797 11.154 -4.264 16.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.184 4.184 3 C 0.020 3.980 4 N -0.148 5.148 5 C 0.037 3.963 6 N -0.193 5.193 7 C 0.074 3.926 8 C -0.583 4.583 9 H 0.098 0.902 10 C -0.136 4.136 11 N -0.536 5.536 12 Si 0.720 3.280 13 H -0.200 1.200 14 H -0.215 1.215 15 H -0.201 1.201 16 C -0.050 4.050 17 C -0.007 4.007 18 O -0.301 6.301 19 C -0.064 4.064 20 N -0.137 5.137 21 N -0.119 5.119 22 C -0.106 4.106 23 C 0.078 3.922 24 O -0.262 6.262 25 C -0.063 4.063 26 C -0.204 4.204 27 C -0.175 4.175 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.136 0.864 31 H 0.110 0.890 32 H 0.130 0.870 33 H 0.044 0.956 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.096 0.904 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.105 0.895 46 H 0.128 0.872 47 H 0.125 0.875 48 H 0.127 0.873 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.477 11.209 -3.611 15.762 hybrid contribution 0.810 -0.725 0.208 1.107 sum -9.667 10.484 -3.403 14.661 Atomic orbital electron populations 1.23875 0.95465 1.02063 0.99513 1.23181 0.96196 0.98556 1.00485 1.20877 0.93082 0.96588 0.87489 1.46261 1.09682 1.49118 1.09736 1.22569 0.83102 0.98972 0.91654 1.59396 1.17938 1.07228 1.34728 1.19896 0.96494 0.78477 0.97692 1.21877 1.29566 0.95301 1.11605 0.90191 1.24901 0.96385 0.95763 0.96540 1.69940 1.45113 0.99728 1.38826 0.86634 0.81035 0.76635 0.83680 1.20025 1.21526 1.20141 1.22012 0.91578 0.95802 0.95649 1.22607 0.91664 0.99463 0.86974 1.87930 1.45764 1.82646 1.13809 1.22645 0.98641 0.99971 0.85174 1.74898 1.20863 1.17718 1.00246 1.73979 0.95713 1.15702 1.26475 1.23522 0.97165 1.07430 0.82496 1.18995 0.87568 0.85788 0.99853 1.87875 1.44444 1.14504 1.79378 1.22737 0.93209 0.89654 1.00710 1.23515 1.02885 1.03309 0.90660 1.23300 0.97096 0.96676 1.00457 0.87983 0.88300 0.86439 0.88992 0.87033 0.95638 0.93279 0.92862 0.92180 0.89585 0.93432 0.91758 0.94867 0.94249 0.90403 0.93165 0.93995 0.89493 0.87211 0.87453 0.87323 0.87486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.85 13.56 29.01 0.39 -1.46 16 2 C -0.17 -2.27 9.85 -36.02 -0.35 -2.63 16 3 C 0.14 2.10 6.42 -5.19 -0.03 2.06 16 4 N -0.46 -8.33 2.79 -115.36 -0.32 -8.65 16 5 C 0.39 8.47 6.14 -318.88 -1.96 6.51 16 6 N -0.47 -9.96 4.62 -175.88 -0.81 -10.77 16 7 C 0.20 4.94 4.89 -4.97 -0.02 4.91 16 8 C -0.54 -14.80 7.35 -34.44 -0.25 -15.06 16 9 H 0.08 2.24 5.42 -52.49 -0.28 1.95 16 10 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 11 N -0.90 -25.94 13.29 55.43 0.74 -25.20 16 12 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 13 H -0.27 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 C 0.08 1.51 4.98 -3.82 -0.02 1.50 16 17 C 0.07 1.20 6.09 37.16 0.23 1.43 16 18 O -0.38 -6.42 10.66 -35.23 -0.38 -6.79 16 19 C 0.03 0.42 11.01 101.05 1.11 1.53 16 20 N -0.29 -6.93 10.33 30.31 0.31 -6.62 16 21 N -0.28 -5.93 12.16 32.99 0.40 -5.53 16 22 C 0.16 2.92 6.20 -154.01 -0.96 1.96 16 23 C 0.12 1.73 2.30 -91.77 -0.21 1.52 16 24 O -0.35 -4.68 10.91 -35.23 -0.38 -5.06 16 25 C 0.03 0.40 10.62 101.05 1.07 1.48 16 26 C -0.17 -2.06 10.17 -26.73 -0.27 -2.34 16 27 C -0.14 -1.64 9.51 -26.73 -0.25 -1.89 16 28 H 0.10 0.98 8.06 -52.49 -0.42 0.56 16 29 H 0.10 0.94 7.83 -52.49 -0.41 0.53 16 30 H 0.12 1.89 8.06 -52.49 -0.42 1.46 16 31 H 0.09 1.19 7.72 -51.93 -0.40 0.79 16 32 H 0.11 1.69 8.09 -51.93 -0.42 1.27 16 33 H 0.03 0.70 8.09 -51.93 -0.42 0.28 16 34 H 0.05 1.27 6.68 -51.93 -0.35 0.93 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.06 1.13 7.98 -51.93 -0.41 0.72 16 37 H 0.09 1.85 6.05 -51.93 -0.31 1.54 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 1.21 6.59 -51.93 -0.34 0.87 16 40 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.05 0.59 8.13 -51.93 -0.42 0.17 16 44 H 0.04 0.59 7.58 -51.93 -0.39 0.20 16 45 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 47 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 49 H 0.11 1.38 8.06 -51.93 -0.42 0.96 16 LS Contribution 407.96 15.07 6.15 6.15 Total: -1.00 -32.06 407.96 -8.90 -40.96 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -7.95 Total: 3.14 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -1.63 Total: 1.29 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.32 Total: -56.77 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: -0.76 Total: -11.86 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.06 -8.90 -40.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356214601.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.398 kcal (2) G-P(sol) polarization free energy of solvation -32.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds