Wall clock time and date at job start Tue Mar 31 2020 19:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50708 * 119.99613 * 2 1 4 4 N 1.46501 * 109.47101 * 121.56559 * 3 2 1 5 5 C 1.36448 * 127.13978 * 96.00211 * 4 3 2 6 6 N 1.38584 * 126.47048 * 359.97438 * 5 4 3 7 7 C 1.46897 * 111.00036 * 251.16282 * 6 5 4 8 8 C 1.50705 * 109.47027 * 293.20470 * 7 6 5 9 9 H 1.08001 * 119.99516 * 3.55489 * 8 7 6 10 10 C 1.37872 * 120.00093 * 183.55381 * 8 7 6 11 11 N 1.31516 * 120.00146 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99934 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.46724 * 60.00247 * 12 10 8 14 14 H 1.48501 * 109.46807 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47087 * 300.00142 * 12 10 8 16 16 C 1.46899 * 111.00062 * 127.20734 * 6 5 4 17 17 C 1.53002 * 109.47152 * 195.37447 * 16 6 5 18 18 O 1.42895 * 109.47182 * 65.91490 * 17 16 6 19 19 C 1.42895 * 114.00063 * 179.97438 * 18 17 16 20 20 N 1.31212 * 107.05571 * 180.02562 * 5 4 3 21 21 N 1.28529 * 109.86102 * 359.97438 * 20 5 4 22 22 C 1.30296 * 110.05054 * 0.02562 * 21 20 5 23 23 C 1.50708 * 126.34290 * 180.02562 * 22 21 20 24 24 O 1.42895 * 115.55315 * 108.68753 * 23 22 21 25 25 C 1.42907 * 113.99963 * 305.93040 * 24 23 22 26 26 C 1.52998 * 117.49516 * 322.97299 * 23 22 21 27 27 C 1.53000 * 60.00171 * 252.51784 * 26 23 22 28 28 H 1.07996 * 119.99667 * 179.97438 * 1 2 3 29 29 H 1.07998 * 120.00258 * 0.02562 * 1 2 3 30 30 H 1.07991 * 120.00089 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.46857 * 1.56446 * 3 2 1 32 32 H 1.08999 * 109.46683 * 241.56282 * 3 2 1 33 33 H 1.09001 * 109.47735 * 53.20576 * 7 6 5 34 34 H 1.09001 * 109.47179 * 173.20825 * 7 6 5 35 35 H 0.97003 * 119.99907 * 179.97438 * 11 10 8 36 36 H 1.09004 * 109.47021 * 315.37235 * 16 6 5 37 37 H 1.08997 * 109.46845 * 75.36902 * 16 6 5 38 38 H 1.09000 * 109.47044 * 185.91282 * 17 16 6 39 39 H 1.08996 * 109.46815 * 305.91318 * 17 16 6 40 40 H 1.08995 * 109.47682 * 300.00053 * 19 18 17 41 41 H 1.09006 * 109.46982 * 60.00314 * 19 18 17 42 42 H 1.09001 * 109.47580 * 179.97438 * 19 18 17 43 43 H 1.08996 * 109.46968 * 305.92840 * 25 24 23 44 44 H 1.09005 * 109.47038 * 65.92009 * 25 24 23 45 45 H 1.08994 * 109.47086 * 185.92498 * 25 24 23 46 46 H 1.08994 * 117.50446 * 0.02562 * 26 23 22 47 47 H 1.09006 * 117.49644 * 145.02470 * 26 23 22 48 48 H 1.09001 * 117.49780 * 252.51780 * 27 26 23 49 49 H 1.08992 * 117.50198 * 107.49133 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9338 1.3667 1.1769 5 6 4.2579 1.0432 1.2401 6 7 5.0457 0.5888 0.1944 7 6 5.3800 -0.8314 0.3658 8 6 6.2762 -0.9951 1.5663 9 1 6.5217 -0.1393 2.1776 10 6 6.7828 -2.2374 1.8841 11 7 6.4843 -3.2795 1.1394 12 14 7.8943 -2.4402 3.3718 13 1 7.1626 -2.0271 4.5962 14 1 8.3023 -3.8627 3.4945 15 1 9.1018 -1.5918 3.2067 16 6 6.2608 1.4030 0.0583 17 6 6.9042 1.1352 -1.3038 18 8 6.0390 1.6045 -2.3398 19 6 6.5490 1.4020 -3.6592 20 7 4.6441 1.2427 2.4781 21 7 3.6549 1.6657 3.1813 22 6 2.5877 1.7599 2.4399 23 6 1.2246 2.2182 2.8907 24 8 0.8171 3.5021 2.4137 25 6 1.7487 4.5489 2.6941 26 6 0.7690 1.8074 4.2923 27 6 0.1412 1.1513 3.0609 28 1 -0.5399 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9352 0.0004 31 1 1.3554 2.1334 0.0281 32 1 2.6689 1.3752 -0.9037 33 1 4.4650 -1.4048 0.5146 34 1 5.8950 -1.1934 -0.5241 35 1 6.8410 -4.1534 1.3628 36 1 6.0013 2.4588 0.1363 37 1 6.9634 1.1421 0.8497 38 1 7.8590 1.6575 -1.3636 39 1 7.0676 0.0643 -1.4242 40 1 7.4963 1.9301 -3.7676 41 1 6.7054 0.3366 -3.8287 42 1 5.8341 1.7843 -4.3878 43 1 1.9656 4.5658 3.7621 44 1 2.6703 4.3733 2.1390 45 1 1.3210 5.5057 2.3949 46 1 1.4552 1.2061 4.8885 47 1 0.1584 2.5167 4.8511 48 1 -0.8824 1.4289 2.8095 49 1 0.4143 0.1181 2.8469 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356214601.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:44 Heat of formation + Delta-G solvation = 47.652023 kcal Electronic energy + Delta-G solvation = -31211.391300 eV Core-core repulsion = 27177.411096 eV Total energy + Delta-G solvation = -4033.980204 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.97556 -39.94365 -39.31158 -37.82582 -37.07038 -35.99941 -34.62445 -33.64948 -31.46746 -30.32081 -28.51020 -27.76439 -27.64807 -26.97906 -25.17891 -24.48553 -23.71074 -23.09638 -21.73349 -21.01205 -20.73963 -18.92742 -18.48601 -17.70428 -17.61183 -17.34777 -17.08411 -16.77338 -16.44870 -16.12212 -16.03473 -15.78900 -15.60370 -15.18537 -14.99940 -14.67515 -14.54211 -14.37702 -13.76237 -13.33588 -13.28465 -13.14757 -12.80147 -12.75451 -12.62308 -12.57306 -12.53125 -12.45433 -12.42916 -12.19876 -12.04723 -11.99895 -11.86358 -11.75807 -11.19111 -10.98613 -10.63896 -10.61622 -10.50413 -10.49124 -10.03170 -9.55633 -8.20989 -6.31838 0.68785 0.97481 1.34011 1.36972 1.45288 1.62569 1.81315 2.22209 2.37868 2.82945 2.93021 2.98105 3.09247 3.14924 3.65485 3.81468 3.84413 3.96350 4.06461 4.19280 4.24525 4.36157 4.38704 4.40583 4.46844 4.49986 4.56261 4.60498 4.60643 4.63913 4.66672 4.74707 4.83672 4.88265 4.90944 4.94214 4.97687 5.01937 5.10400 5.15176 5.26707 5.59200 5.61975 5.70113 5.76008 5.80883 5.95128 6.07761 6.34345 6.46621 6.84058 7.37351 7.79154 8.85473 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009145 B = 0.004872 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.962260 B = 5745.657585 C = 7092.230963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.201 4.201 3 C 0.144 3.856 4 N -0.451 5.451 5 C 0.371 3.629 6 N -0.456 5.456 7 C 0.221 3.779 8 C -0.545 4.545 9 H 0.070 0.930 10 C 0.020 3.980 11 N -0.925 5.925 12 Si 0.948 3.052 13 H -0.286 1.286 14 H -0.279 1.279 15 H -0.264 1.264 16 C 0.080 3.920 17 C 0.081 3.919 18 O -0.401 6.401 19 C 0.027 3.973 20 N -0.334 5.334 21 N -0.313 5.313 22 C 0.183 3.817 23 C 0.099 3.901 24 O -0.338 6.338 25 C 0.032 3.968 26 C -0.159 4.159 27 C -0.117 4.117 28 H 0.119 0.881 29 H 0.125 0.875 30 H 0.083 0.917 31 H 0.117 0.883 32 H 0.101 0.899 33 H -0.007 1.007 34 H 0.037 0.963 35 H 0.264 0.736 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.043 0.957 40 H 0.052 0.948 41 H 0.036 0.964 42 H 0.099 0.901 43 H 0.051 0.949 44 H 0.015 0.985 45 H 0.120 0.880 46 H 0.090 0.910 47 H 0.136 0.864 48 H 0.143 0.857 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.056 12.681 -4.560 18.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.220 4.220 3 C 0.023 3.977 4 N -0.143 5.143 5 C 0.014 3.986 6 N -0.182 5.182 7 C 0.096 3.904 8 C -0.584 4.584 9 H 0.088 0.912 10 C -0.179 4.179 11 N -0.565 5.565 12 Si 0.774 3.226 13 H -0.212 1.212 14 H -0.205 1.205 15 H -0.189 1.189 16 C -0.048 4.048 17 C 0.004 3.996 18 O -0.321 6.321 19 C -0.069 4.069 20 N -0.177 5.177 21 N -0.155 5.155 22 C -0.086 4.086 23 C 0.056 3.944 24 O -0.255 6.255 25 C -0.064 4.064 26 C -0.197 4.197 27 C -0.154 4.154 28 H 0.137 0.863 29 H 0.143 0.857 30 H 0.101 0.899 31 H 0.135 0.865 32 H 0.119 0.881 33 H 0.011 0.989 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.055 0.945 42 H 0.117 0.883 43 H 0.069 0.931 44 H 0.034 0.966 45 H 0.138 0.862 46 H 0.108 0.892 47 H 0.154 0.846 48 H 0.161 0.839 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.738 12.751 -3.930 18.447 hybrid contribution 1.360 -1.122 0.267 1.784 sum -11.378 11.628 -3.663 16.676 Atomic orbital electron populations 1.24165 0.94047 1.04034 0.94269 1.22858 0.97192 0.96617 1.05320 1.21078 0.92847 0.98111 0.85693 1.46512 1.08868 1.48048 1.10907 1.22599 0.84490 1.00227 0.91329 1.59345 1.18587 1.05575 1.34644 1.19428 0.94200 0.80508 0.96293 1.22032 1.29438 0.95009 1.11940 0.91156 1.25597 0.97769 0.95632 0.98928 1.70032 1.46177 1.00066 1.40204 0.85759 0.79648 0.77113 0.80064 1.21196 1.20455 1.18914 1.22001 0.90441 0.95727 0.96618 1.22410 0.92548 0.98514 0.86153 1.87885 1.46387 1.82572 1.15228 1.22880 1.00267 1.00324 0.83462 1.74746 1.22656 1.18917 1.01392 1.73870 0.96556 1.17749 1.27352 1.24329 0.97946 1.04525 0.81777 1.19212 0.86412 0.87102 1.01712 1.87883 1.44119 1.14034 1.79453 1.22849 0.92371 0.90677 1.00496 1.23597 1.02528 1.03414 0.90134 1.23415 0.97779 0.95241 0.98977 0.86306 0.85702 0.89866 0.86492 0.88077 0.98888 0.94549 0.92706 0.91507 0.91879 0.90640 0.93908 0.92898 0.94532 0.88253 0.93055 0.96633 0.86234 0.89176 0.84590 0.83872 0.88682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 13.56 67.78 0.92 -1.45 16 2 C -0.20 -5.44 9.85 25.64 0.25 -5.19 16 3 C 0.14 4.19 6.42 85.64 0.55 4.74 16 4 N -0.45 -16.90 2.79 -518.90 -1.45 -18.35 16 5 C 0.37 16.76 6.14 260.11 1.60 18.36 16 6 N -0.46 -20.51 4.62 -710.36 -3.28 -23.79 16 7 C 0.22 11.67 4.89 85.56 0.42 12.09 16 8 C -0.55 -30.99 7.35 25.60 0.19 -30.80 16 9 H 0.07 4.12 5.42 -2.91 -0.02 4.10 16 10 C 0.02 1.16 5.46 84.65 0.46 1.62 16 11 N -0.92 -55.03 13.29 21.45 0.28 -54.75 16 12 Si 0.95 46.44 29.54 68.60 2.03 48.46 16 13 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 14 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 15 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 16 C 0.08 3.26 4.98 86.30 0.43 3.69 16 17 C 0.08 2.83 6.09 71.98 0.44 3.27 16 18 O -0.40 -13.37 10.66 -148.98 -1.59 -14.96 16 19 C 0.03 0.65 11.01 113.37 1.25 1.90 16 20 N -0.33 -16.52 10.33 -58.01 -0.60 -17.12 16 21 N -0.31 -13.94 12.16 -49.53 -0.60 -14.55 16 22 C 0.18 6.67 6.20 137.64 0.85 7.52 16 23 C 0.10 2.65 2.30 -11.54 -0.03 2.62 16 24 O -0.34 -8.17 10.91 -148.98 -1.63 -9.79 16 25 C 0.03 0.72 10.62 113.37 1.20 1.92 16 26 C -0.16 -3.61 10.17 30.59 0.31 -3.30 16 27 C -0.12 -2.42 9.51 30.60 0.29 -2.13 16 28 H 0.12 1.86 8.06 -2.91 -0.02 1.84 16 29 H 0.12 1.74 7.83 -2.91 -0.02 1.72 16 30 H 0.08 2.84 8.06 -2.92 -0.02 2.82 16 31 H 0.12 2.78 7.72 -2.39 -0.02 2.76 16 32 H 0.10 3.12 8.09 -2.39 -0.02 3.10 16 33 H -0.01 -0.41 8.09 -2.39 -0.02 -0.43 16 34 H 0.04 2.01 6.68 -2.39 -0.02 1.99 16 35 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 36 H 0.07 2.61 7.98 -2.38 -0.02 2.59 16 37 H 0.06 2.87 6.05 -2.39 -0.01 2.85 16 38 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.04 1.68 6.59 -2.39 -0.02 1.67 16 40 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.05 1.14 8.13 -2.39 -0.02 1.12 16 44 H 0.01 0.42 7.58 -2.38 -0.02 0.40 16 45 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 47 H 0.14 2.30 8.14 -2.38 -0.02 2.28 16 48 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 49 H 0.09 2.25 8.06 -2.39 -0.02 2.23 16 Total: -1.00 -73.50 407.96 3.23 -70.27 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.93 Total: 19.71 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 9.14 Total: 14.86 kcal Atomic # 7 Polarization: -122.91 SS G_CDS: -5.65 Total: -128.55 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -3.21 Total: -24.75 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.46 kcal Total: -73.50 3.23 -70.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356214601.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.918 kcal (2) G-P(sol) polarization free energy of solvation -73.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds