Wall clock time and date at job start Tue Mar 31 2020 19:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 113.99758 * 2 1 4 4 C 1.53002 * 109.47047 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.47005 * 65.00488 * 4 3 2 6 6 C 1.46902 * 111.00251 * 66.04117 * 5 4 3 7 7 C 1.50693 * 109.47328 * 199.49236 * 6 5 4 8 8 H 1.08005 * 119.99853 * 4.07986 * 7 6 5 9 9 C 1.37877 * 120.00273 * 184.08520 * 7 6 5 10 10 N 1.31515 * 119.99951 * 5.63471 * 9 7 6 11 11 Si 1.86803 * 120.00077 * 185.64016 * 9 7 6 12 12 H 1.48492 * 109.47257 * 5.00349 * 11 9 7 13 13 H 1.48498 * 109.47094 * 125.00307 * 11 9 7 14 14 H 1.48500 * 109.46782 * 245.00299 * 11 9 7 15 15 C 1.38576 * 110.99961 * 189.99939 * 5 4 3 16 16 N 1.31218 * 126.47237 * 288.29536 * 15 5 4 17 17 N 1.28532 * 109.85569 * 179.82212 * 16 15 5 18 18 C 1.30282 * 110.05620 * 0.45681 * 17 16 15 19 19 C 1.50700 * 126.34753 * 179.69191 * 18 17 16 20 20 H 1.09000 * 110.80732 * 183.67143 * 19 18 17 21 21 C 1.54812 * 110.90868 * 60.03879 * 19 18 17 22 22 C 1.54098 * 104.18806 * 220.92308 * 21 19 18 23 23 O 1.43745 * 107.29477 * 357.96832 * 22 21 19 24 24 C 1.44386 * 106.97510 * 26.51539 * 23 22 21 25 25 N 1.36454 * 126.47003 * 108.61102 * 15 5 4 26 26 C 1.46497 * 127.14111 * 359.97438 * 25 15 5 27 27 C 1.53000 * 117.49897 * 13.65321 * 26 25 15 28 28 C 1.52995 * 117.49815 * 305.02907 * 26 25 15 29 29 H 1.09003 * 109.47542 * 59.99844 * 1 2 3 30 30 H 1.09005 * 109.46778 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47687 * 299.99503 * 1 2 3 32 32 H 1.09000 * 109.47004 * 60.00035 * 3 2 1 33 33 H 1.08997 * 109.47284 * 300.00365 * 3 2 1 34 34 H 1.09001 * 109.47355 * 305.00222 * 4 3 2 35 35 H 1.09003 * 109.47223 * 184.99745 * 4 3 2 36 36 H 1.08997 * 109.47228 * 319.49149 * 6 5 4 37 37 H 1.09001 * 109.47038 * 79.48964 * 6 5 4 38 38 H 0.96996 * 120.00433 * 180.02562 * 10 9 7 39 39 H 1.08992 * 110.48824 * 339.60108 * 21 19 18 40 40 H 1.09003 * 110.48728 * 102.11708 * 21 19 18 41 41 H 1.09000 * 109.87739 * 117.39542 * 22 21 19 42 42 H 1.08997 * 109.88103 * 238.54413 * 22 21 19 43 43 H 1.08995 * 110.61588 * 201.43397 * 24 23 22 44 44 H 1.09001 * 110.61437 * 78.43844 * 24 23 22 45 45 H 1.08997 * 115.54752 * 159.35390 * 26 25 15 46 46 H 1.08998 * 117.49951 * 359.97438 * 27 26 25 47 47 H 1.08992 * 117.50195 * 145.01724 * 27 26 25 48 48 H 1.09004 * 117.49383 * 214.97343 * 28 26 25 49 49 H 1.08992 * 117.50006 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9778 0.5625 -1.2544 6 6 3.6967 1.4349 -2.4024 7 6 3.7053 0.6177 -3.6684 8 1 3.8345 -0.4535 -3.6188 9 6 3.5484 1.2373 -4.8901 10 7 3.5024 2.5497 -4.9606 11 14 3.4009 0.2126 -6.4450 12 1 3.3603 -1.2279 -6.0866 13 1 2.1539 0.5793 -7.1631 14 1 4.5714 0.4719 -7.3214 15 6 5.3228 0.2333 -1.1983 16 7 6.3325 1.0709 -1.2229 17 7 7.4397 0.4223 -1.1498 18 6 7.2043 -0.8574 -1.0846 19 6 8.2363 -1.9520 -0.9950 20 1 7.7628 -2.9335 -1.0184 21 6 9.1064 -1.7884 0.2750 22 6 10.5346 -2.1182 -0.2006 23 8 10.4498 -2.4802 -1.5891 24 6 9.2860 -1.8164 -2.1274 25 7 5.8473 -1.0235 -1.1131 26 6 5.1097 -2.2882 -1.0623 27 6 3.6240 -2.2547 -1.4261 28 6 4.0508 -2.4450 0.0308 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8465 -0.8899 34 1 3.8508 0.5686 0.8427 35 1 3.9784 2.1767 0.0902 36 1 2.7183 1.8982 -2.2756 37 1 4.4604 2.2102 -2.4651 38 1 3.3916 2.9857 -5.8200 39 1 9.0541 -0.7642 0.6439 40 1 8.7885 -2.4881 1.0480 41 1 11.1752 -1.2440 -0.0839 42 1 10.9339 -2.9524 0.3762 43 1 8.9420 -2.3182 -3.0318 44 1 9.5012 -0.7668 -2.3277 45 1 5.6773 -3.1751 -1.3442 46 1 3.1952 -1.2916 -1.7028 47 1 3.2139 -3.1195 -1.9475 48 1 3.9215 -3.4352 0.4678 49 1 3.9033 -1.6074 0.7124 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001396108398.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:19 Heat of formation + Delta-G solvation = 41.224515 kcal Electronic energy + Delta-G solvation = -31268.569768 eV Core-core repulsion = 27234.310847 eV Total energy + Delta-G solvation = -4034.258921 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.49624 -39.29162 -38.06957 -37.13496 -36.23016 -33.17545 -32.65041 -32.00439 -30.13532 -29.40125 -27.97760 -26.68581 -25.70540 -23.58797 -23.42578 -22.83434 -22.32822 -22.07668 -21.38707 -19.81936 -19.33898 -17.24206 -16.85102 -16.35502 -16.21161 -15.84448 -15.69494 -15.66161 -15.06902 -15.03057 -14.52352 -14.48296 -14.31236 -13.84709 -13.55807 -13.31294 -13.22039 -12.51210 -12.26873 -12.17050 -11.84309 -11.60991 -11.56477 -11.53729 -11.42062 -11.31633 -11.12447 -11.03308 -10.89166 -10.87545 -10.71487 -10.53738 -10.30876 -10.08320 -9.91448 -9.74637 -9.40585 -9.24746 -9.11932 -8.50778 -8.39141 -7.68997 -6.08478 -4.09397 2.18607 2.68313 3.26775 3.34799 3.37196 3.38000 3.82189 4.06695 4.08171 4.26335 4.43134 4.46235 4.59935 4.70829 4.87671 4.91844 5.01311 5.10715 5.16995 5.21631 5.26495 5.31948 5.42378 5.54396 5.56339 5.61435 5.62463 5.67321 5.71718 5.81248 5.83202 5.85011 5.86693 5.89307 5.97667 6.00141 6.16174 6.29579 6.32623 6.55886 6.75378 6.85598 7.02318 7.18489 7.38154 7.47739 7.61119 7.95674 8.06622 8.30149 8.94227 9.32408 9.53772 11.01946 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009583 B = 0.004776 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2921.047784 B = 5861.461490 C = 7409.752271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.372 6.372 3 C 0.066 3.934 4 C 0.067 3.933 5 N -0.457 5.457 6 C 0.194 3.806 7 C -0.509 4.509 8 H 0.062 0.938 9 C 0.062 3.938 10 N -0.891 5.891 11 Si 0.894 3.106 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.284 1.284 15 C 0.398 3.602 16 N -0.315 5.315 17 N -0.283 5.283 18 C 0.163 3.837 19 C -0.025 4.025 20 H 0.097 0.903 21 C -0.143 4.143 22 C 0.050 3.950 23 O -0.378 6.378 24 C 0.060 3.940 25 N -0.434 5.434 26 C 0.045 3.955 27 C -0.160 4.160 28 C -0.170 4.170 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.031 0.969 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.040 0.960 37 H 0.024 0.976 38 H 0.262 0.738 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.062 0.938 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.079 0.921 45 H 0.131 0.869 46 H 0.162 0.838 47 H 0.093 0.907 48 H 0.096 0.904 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.508 -10.246 12.794 16.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.290 6.290 3 C -0.011 4.011 4 C -0.061 4.061 5 N -0.184 5.184 6 C 0.071 3.929 7 C -0.547 4.547 8 H 0.080 0.920 9 C -0.140 4.140 10 N -0.530 5.530 11 Si 0.722 3.278 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.211 1.211 15 C 0.042 3.958 16 N -0.158 5.158 17 N -0.124 5.124 18 C -0.104 4.104 19 C -0.047 4.047 20 H 0.115 0.885 21 C -0.182 4.182 22 C -0.027 4.027 23 O -0.297 6.297 24 C -0.017 4.017 25 N -0.125 5.125 26 C -0.060 4.060 27 C -0.197 4.197 28 C -0.208 4.208 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.042 0.958 38 H 0.071 0.929 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.101 0.899 43 H 0.115 0.885 44 H 0.097 0.903 45 H 0.149 0.851 46 H 0.180 0.820 47 H 0.112 0.888 48 H 0.115 0.885 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.217 -9.505 12.426 15.801 hybrid contribution -0.890 -0.663 -0.761 1.346 sum 1.327 -10.168 11.665 15.531 Atomic orbital electron populations 1.22659 0.82116 1.02137 0.99459 1.87958 1.18537 1.27265 1.95245 1.22646 0.92754 0.85293 1.00430 1.22087 0.93889 0.98547 0.91545 1.59167 1.06787 1.47300 1.05145 1.20063 0.97205 0.90898 0.84722 1.21053 1.49750 0.93994 0.89919 0.91998 1.24902 0.95359 0.94847 0.98938 1.69959 1.49853 1.07842 1.25389 0.86506 0.77634 0.80484 0.83209 1.19721 1.20924 1.21073 1.22378 0.92564 0.81026 0.99844 1.74637 0.94448 1.25563 1.21164 1.73874 1.20161 1.00710 1.17703 1.23915 0.82104 0.95776 1.08557 1.20920 0.92374 0.94337 0.97022 0.88514 1.22985 0.94212 1.03962 0.97015 1.23137 0.96276 1.00457 0.82816 1.88862 1.46749 1.70903 1.23149 1.23608 0.83220 0.99188 0.95684 1.45679 1.06158 1.06862 1.53826 1.21840 0.90714 0.84864 1.08563 1.23952 0.92149 1.07714 0.95901 1.23276 1.01170 1.02879 0.93466 0.94036 0.90163 0.95035 0.93443 0.91642 0.91392 0.92292 0.94194 0.95760 0.92856 0.89404 0.90253 0.91979 0.89881 0.88543 0.90256 0.85141 0.82038 0.88816 0.88541 0.88302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.37 -5.71 10.65 -35.23 -0.38 -6.08 16 3 C 0.07 1.00 6.02 37.16 0.22 1.23 16 4 C 0.07 1.16 5.28 -3.82 -0.02 1.14 16 5 N -0.46 -9.35 1.69 -175.88 -0.30 -9.65 16 6 C 0.19 4.83 4.60 -4.98 -0.02 4.81 16 7 C -0.51 -13.81 8.73 -34.44 -0.30 -14.11 16 8 H 0.06 1.69 7.02 -52.48 -0.37 1.32 16 9 C 0.06 1.72 5.45 -17.82 -0.10 1.62 16 10 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 11 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 C 0.40 8.43 5.88 -318.88 -1.87 6.56 16 16 N -0.31 -7.31 11.68 30.31 0.35 -6.96 16 17 N -0.28 -5.94 11.87 32.99 0.39 -5.55 16 18 C 0.16 2.88 6.63 -154.02 -1.02 1.86 16 19 C -0.03 -0.33 3.53 -89.76 -0.32 -0.65 16 20 H 0.10 1.10 7.03 -51.93 -0.37 0.74 16 21 C -0.14 -1.59 6.59 -25.20 -0.17 -1.76 16 22 C 0.05 0.53 7.70 37.73 0.29 0.82 16 23 O -0.38 -5.01 11.52 -35.23 -0.41 -5.42 16 24 C 0.06 0.82 7.16 38.21 0.27 1.10 16 25 N -0.43 -7.94 3.15 -107.02 -0.34 -8.28 16 26 C 0.05 0.67 6.65 -67.93 -0.45 0.22 16 27 C -0.16 -2.50 9.75 -26.73 -0.26 -2.76 16 28 C -0.17 -2.24 10.35 -26.73 -0.28 -2.52 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.11 6.08 -51.93 -0.32 0.80 16 34 H 0.07 1.10 7.23 -51.93 -0.38 0.72 16 35 H 0.06 1.04 8.12 -51.93 -0.42 0.62 16 36 H 0.04 1.00 5.82 -51.93 -0.30 0.70 16 37 H 0.02 0.69 7.55 -51.93 -0.39 0.30 16 38 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.09 1.10 7.79 -51.93 -0.40 0.70 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 44 H 0.08 1.21 7.85 -51.93 -0.41 0.80 16 45 H 0.13 1.59 7.26 -51.93 -0.38 1.21 16 46 H 0.16 3.14 4.63 -51.93 -0.24 2.90 16 47 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 48 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 49 H 0.10 1.45 7.31 -51.93 -0.38 1.07 16 LS Contribution 393.48 15.07 5.93 5.93 Total: -1.00 -32.52 393.48 -9.65 -42.17 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -7.71 Total: 3.55 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -2.91 Total: -0.93 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: 0.85 Total: -55.76 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: -0.78 Total: -11.50 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.52 -9.65 -42.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001396108398.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.390 kcal (2) G-P(sol) polarization free energy of solvation -32.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds