Wall clock time and date at job start Tue Mar 31 2020 19:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 113.99758 * 2 1 4 4 C 1.53002 * 109.47047 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.47005 * 65.00488 * 4 3 2 6 6 C 1.46902 * 111.00251 * 66.04117 * 5 4 3 7 7 C 1.50693 * 109.47328 * 199.49236 * 6 5 4 8 8 H 1.08005 * 119.99853 * 4.07986 * 7 6 5 9 9 C 1.37877 * 120.00273 * 184.08520 * 7 6 5 10 10 N 1.31515 * 119.99951 * 5.63471 * 9 7 6 11 11 Si 1.86803 * 120.00077 * 185.64016 * 9 7 6 12 12 H 1.48492 * 109.47257 * 5.00349 * 11 9 7 13 13 H 1.48498 * 109.47094 * 125.00307 * 11 9 7 14 14 H 1.48500 * 109.46782 * 245.00299 * 11 9 7 15 15 C 1.38576 * 110.99961 * 189.99939 * 5 4 3 16 16 N 1.31218 * 126.47237 * 288.29536 * 15 5 4 17 17 N 1.28532 * 109.85569 * 179.82212 * 16 15 5 18 18 C 1.30282 * 110.05620 * 0.45681 * 17 16 15 19 19 C 1.50700 * 126.34753 * 179.69191 * 18 17 16 20 20 H 1.09000 * 110.80732 * 183.67143 * 19 18 17 21 21 C 1.54812 * 110.90868 * 60.03879 * 19 18 17 22 22 C 1.54098 * 104.18806 * 220.92308 * 21 19 18 23 23 O 1.43745 * 107.29477 * 357.96832 * 22 21 19 24 24 C 1.44386 * 106.97510 * 26.51539 * 23 22 21 25 25 N 1.36454 * 126.47003 * 108.61102 * 15 5 4 26 26 C 1.46497 * 127.14111 * 359.97438 * 25 15 5 27 27 C 1.53000 * 117.49897 * 13.65321 * 26 25 15 28 28 C 1.52995 * 117.49815 * 305.02907 * 26 25 15 29 29 H 1.09003 * 109.47542 * 59.99844 * 1 2 3 30 30 H 1.09005 * 109.46778 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47687 * 299.99503 * 1 2 3 32 32 H 1.09000 * 109.47004 * 60.00035 * 3 2 1 33 33 H 1.08997 * 109.47284 * 300.00365 * 3 2 1 34 34 H 1.09001 * 109.47355 * 305.00222 * 4 3 2 35 35 H 1.09003 * 109.47223 * 184.99745 * 4 3 2 36 36 H 1.08997 * 109.47228 * 319.49149 * 6 5 4 37 37 H 1.09001 * 109.47038 * 79.48964 * 6 5 4 38 38 H 0.96996 * 120.00433 * 180.02562 * 10 9 7 39 39 H 1.08992 * 110.48824 * 339.60108 * 21 19 18 40 40 H 1.09003 * 110.48728 * 102.11708 * 21 19 18 41 41 H 1.09000 * 109.87739 * 117.39542 * 22 21 19 42 42 H 1.08997 * 109.88103 * 238.54413 * 22 21 19 43 43 H 1.08995 * 110.61588 * 201.43397 * 24 23 22 44 44 H 1.09001 * 110.61437 * 78.43844 * 24 23 22 45 45 H 1.08997 * 115.54752 * 159.35390 * 26 25 15 46 46 H 1.08998 * 117.49951 * 359.97438 * 27 26 25 47 47 H 1.08992 * 117.50195 * 145.01724 * 27 26 25 48 48 H 1.09004 * 117.49383 * 214.97343 * 28 26 25 49 49 H 1.08992 * 117.50006 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9778 0.5625 -1.2544 6 6 3.6967 1.4349 -2.4024 7 6 3.7053 0.6177 -3.6684 8 1 3.8345 -0.4535 -3.6188 9 6 3.5484 1.2373 -4.8901 10 7 3.5024 2.5497 -4.9606 11 14 3.4009 0.2126 -6.4450 12 1 3.3603 -1.2279 -6.0866 13 1 2.1539 0.5793 -7.1631 14 1 4.5714 0.4719 -7.3214 15 6 5.3228 0.2333 -1.1983 16 7 6.3325 1.0709 -1.2229 17 7 7.4397 0.4223 -1.1498 18 6 7.2043 -0.8574 -1.0846 19 6 8.2363 -1.9520 -0.9950 20 1 7.7628 -2.9335 -1.0184 21 6 9.1064 -1.7884 0.2750 22 6 10.5346 -2.1182 -0.2006 23 8 10.4498 -2.4802 -1.5891 24 6 9.2860 -1.8164 -2.1274 25 7 5.8473 -1.0235 -1.1131 26 6 5.1097 -2.2882 -1.0623 27 6 3.6240 -2.2547 -1.4261 28 6 4.0508 -2.4450 0.0308 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8465 -0.8899 34 1 3.8508 0.5686 0.8427 35 1 3.9784 2.1767 0.0902 36 1 2.7183 1.8982 -2.2756 37 1 4.4604 2.2102 -2.4651 38 1 3.3916 2.9857 -5.8200 39 1 9.0541 -0.7642 0.6439 40 1 8.7885 -2.4881 1.0480 41 1 11.1752 -1.2440 -0.0839 42 1 10.9339 -2.9524 0.3762 43 1 8.9420 -2.3182 -3.0318 44 1 9.5012 -0.7668 -2.3277 45 1 5.6773 -3.1751 -1.3442 46 1 3.1952 -1.2916 -1.7028 47 1 3.2139 -3.1195 -1.9475 48 1 3.9215 -3.4352 0.4678 49 1 3.9033 -1.6074 0.7124 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001396108398.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:18 Heat of formation + Delta-G solvation = 22.055868 kcal Electronic energy + Delta-G solvation = -31269.400983 eV Core-core repulsion = 27234.310847 eV Total energy + Delta-G solvation = -4035.090136 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.99097 -40.31232 -39.42967 -38.34396 -37.65162 -34.78971 -34.30891 -33.34254 -31.38531 -30.64208 -29.59461 -28.23168 -26.87400 -25.22804 -24.67502 -24.40250 -23.41974 -23.12633 -22.72295 -21.08596 -20.84695 -18.81624 -18.29406 -17.73520 -17.43728 -17.18990 -17.12053 -16.92665 -16.51020 -16.15191 -16.03094 -15.67218 -15.54838 -15.12681 -14.94049 -14.76536 -14.28693 -14.10582 -13.72028 -13.52032 -13.20377 -13.03738 -12.85254 -12.77223 -12.66219 -12.57129 -12.52988 -12.49376 -12.37556 -12.31312 -12.08037 -12.00112 -11.78284 -11.52422 -11.45309 -11.18079 -10.72292 -10.67416 -10.42770 -10.41050 -9.94819 -9.37886 -8.22741 -6.30464 0.74116 1.30624 1.35125 1.36230 1.48153 1.82165 2.35129 2.76352 2.84345 2.92952 2.96706 3.11153 3.34347 3.58133 3.61636 3.75491 3.84893 3.97935 4.02619 4.09503 4.13752 4.16947 4.24572 4.34649 4.37493 4.48117 4.51084 4.63634 4.67921 4.70969 4.74563 4.79409 4.86684 4.86999 4.91905 4.95148 4.97224 5.02872 5.08829 5.15503 5.24342 5.30079 5.55227 5.69838 5.79001 5.82625 5.91601 6.23484 6.37704 6.48003 6.80721 7.36547 7.78236 8.88219 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009583 B = 0.004776 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2921.047784 B = 5861.461490 C = 7409.752271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.388 6.388 3 C 0.075 3.925 4 C 0.066 3.934 5 N -0.442 5.442 6 C 0.214 3.786 7 C -0.512 4.512 8 H 0.060 0.940 9 C 0.008 3.992 10 N -0.929 5.929 11 Si 0.958 3.042 12 H -0.261 1.261 13 H -0.273 1.273 14 H -0.288 1.288 15 C 0.379 3.621 16 N -0.362 5.362 17 N -0.321 5.321 18 C 0.184 3.816 19 C -0.025 4.025 20 H 0.128 0.872 21 C -0.135 4.135 22 C 0.047 3.953 23 O -0.387 6.387 24 C 0.062 3.938 25 N -0.434 5.434 26 C 0.030 3.970 27 C -0.179 4.179 28 C -0.140 4.140 29 H 0.031 0.969 30 H 0.097 0.903 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.041 0.959 34 H 0.082 0.918 35 H 0.047 0.953 36 H 0.033 0.967 37 H -0.022 1.022 38 H 0.263 0.737 39 H 0.067 0.933 40 H 0.109 0.891 41 H 0.061 0.939 42 H 0.114 0.886 43 H 0.104 0.896 44 H 0.053 0.947 45 H 0.167 0.833 46 H 0.123 0.877 47 H 0.114 0.886 48 H 0.137 0.863 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.284 -14.046 14.085 19.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.307 6.307 3 C -0.002 4.002 4 C -0.062 4.062 5 N -0.168 5.168 6 C 0.089 3.911 7 C -0.551 4.551 8 H 0.078 0.922 9 C -0.190 4.190 10 N -0.569 5.569 11 Si 0.783 3.217 12 H -0.185 1.185 13 H -0.199 1.199 14 H -0.215 1.215 15 C 0.022 3.978 16 N -0.205 5.205 17 N -0.161 5.161 18 C -0.085 4.085 19 C -0.046 4.046 20 H 0.146 0.854 21 C -0.174 4.174 22 C -0.029 4.029 23 O -0.306 6.306 24 C -0.016 4.016 25 N -0.125 5.125 26 C -0.073 4.073 27 C -0.217 4.217 28 C -0.177 4.177 29 H 0.050 0.950 30 H 0.116 0.884 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.059 0.941 34 H 0.100 0.900 35 H 0.065 0.935 36 H 0.050 0.950 37 H -0.004 1.004 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.128 0.872 41 H 0.079 0.921 42 H 0.132 0.868 43 H 0.122 0.878 44 H 0.071 0.929 45 H 0.184 0.816 46 H 0.141 0.859 47 H 0.132 0.868 48 H 0.154 0.846 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.984 -13.327 13.745 19.248 hybrid contribution -0.786 0.499 -1.079 1.426 sum 1.198 -12.827 12.666 18.067 Atomic orbital electron populations 1.22842 0.80318 1.03524 1.00059 1.87918 1.20478 1.26904 1.95376 1.22502 0.91246 0.85680 1.00792 1.22198 0.95423 0.97967 0.90585 1.59164 1.06735 1.45970 1.04923 1.19597 0.95112 0.90107 0.86252 1.21306 1.48896 0.93964 0.90927 0.92217 1.25759 0.95148 0.95881 1.02260 1.70088 1.51141 1.09528 1.26176 0.85501 0.77614 0.79429 0.79135 1.18460 1.19859 1.21452 1.22459 0.92326 0.82218 1.00775 1.74526 0.95693 1.27622 1.22696 1.73777 1.19800 1.02556 1.19928 1.24738 0.82681 0.95790 1.05257 1.21210 0.91421 0.93940 0.98017 0.85434 1.22970 0.94095 1.03696 0.96642 1.23335 0.95979 1.01813 0.81782 1.88860 1.46402 1.70673 1.24626 1.23490 0.83769 0.97947 0.96362 1.45909 1.06432 1.07056 1.53080 1.22410 0.90734 0.84201 1.09971 1.23821 0.92739 1.06644 0.98485 1.23293 0.98388 1.04251 0.91808 0.95049 0.88422 0.92784 0.90093 0.94106 0.89976 0.93497 0.94958 1.00423 0.92799 0.91407 0.87232 0.92092 0.86780 0.87794 0.92869 0.81555 0.85890 0.86800 0.84552 0.89984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.01 113.37 1.25 1.90 16 2 O -0.39 -11.60 10.65 -148.98 -1.59 -13.19 16 3 C 0.07 2.30 6.02 71.98 0.43 2.74 16 4 C 0.07 2.33 5.28 86.30 0.46 2.79 16 5 N -0.44 -18.77 1.69 -710.35 -1.20 -19.97 16 6 C 0.21 11.27 4.60 85.55 0.39 11.67 16 7 C -0.51 -28.74 8.73 25.60 0.22 -28.52 16 8 H 0.06 3.31 7.02 -2.91 -0.02 3.29 16 9 C 0.01 0.46 5.45 84.65 0.46 0.92 16 10 N -0.93 -56.37 13.29 21.45 0.29 -56.08 16 11 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 12 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 13 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 14 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 15 C 0.38 16.58 5.88 260.11 1.53 18.11 16 16 N -0.36 -17.71 11.68 -58.01 -0.68 -18.39 16 17 N -0.32 -13.92 11.87 -49.54 -0.59 -14.51 16 18 C 0.18 6.39 6.63 137.64 0.91 7.30 16 19 C -0.02 -0.60 3.53 -10.24 -0.04 -0.64 16 20 H 0.13 2.34 7.03 -2.39 -0.02 2.32 16 21 C -0.14 -2.66 6.59 31.58 0.21 -2.46 16 22 C 0.05 0.87 7.70 72.35 0.56 1.43 16 23 O -0.39 -9.43 11.52 -148.98 -1.72 -11.15 16 24 C 0.06 1.62 7.16 72.67 0.52 2.14 16 25 N -0.43 -15.59 3.15 -492.49 -1.55 -17.14 16 26 C 0.03 0.81 6.65 44.99 0.30 1.11 16 27 C -0.18 -5.25 9.75 30.60 0.30 -4.95 16 28 C -0.14 -3.22 10.35 30.59 0.32 -2.90 16 29 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.04 1.45 6.08 -2.39 -0.01 1.44 16 34 H 0.08 2.67 7.23 -2.39 -0.02 2.65 16 35 H 0.05 1.76 8.12 -2.39 -0.02 1.75 16 36 H 0.03 1.74 5.82 -2.39 -0.01 1.72 16 37 H -0.02 -1.37 7.55 -2.39 -0.02 -1.38 16 38 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 39 H 0.07 1.64 7.79 -2.39 -0.02 1.62 16 40 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 44 H 0.05 1.66 7.85 -2.39 -0.02 1.64 16 45 H 0.17 3.25 7.26 -2.39 -0.02 3.23 16 46 H 0.12 4.76 4.63 -2.39 -0.01 4.75 16 47 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 48 H 0.14 2.10 8.14 -2.38 -0.02 2.08 16 49 H 0.08 2.22 7.31 -2.39 -0.02 2.20 16 Total: -1.00 -75.63 393.48 3.76 -71.87 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 0.95 Total: 21.11 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 7.82 Total: 10.64 kcal Atomic # 7 Polarization: -122.36 SS G_CDS: -3.73 Total: -126.10 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -3.30 Total: -24.33 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -75.63 3.76 -71.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001396108398.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.922 kcal (2) G-P(sol) polarization free energy of solvation -75.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds