Wall clock time and date at job start Tue Mar 31 2020 19:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 114.00339 * 2 1 4 4 C 1.53001 * 109.47242 * 179.97438 * 3 2 1 5 5 N 1.46891 * 109.46873 * 67.10311 * 4 3 2 6 6 C 1.46899 * 111.00188 * 286.89249 * 5 4 3 7 7 C 1.50703 * 109.46998 * 302.05011 * 6 5 4 8 8 H 1.08004 * 119.99722 * 4.89589 * 7 6 5 9 9 C 1.37876 * 120.00081 * 184.88813 * 7 6 5 10 10 N 1.31520 * 119.99780 * 184.99032 * 9 7 6 11 11 Si 1.86796 * 119.99943 * 4.99784 * 9 7 6 12 12 H 1.48500 * 109.47320 * 94.90886 * 11 9 7 13 13 H 1.48507 * 109.46974 * 214.90229 * 11 9 7 14 14 H 1.48498 * 109.47275 * 334.90222 * 11 9 7 15 15 C 1.38584 * 111.00284 * 162.93798 * 5 4 3 16 16 N 1.31221 * 126.46923 * 68.33753 * 15 5 4 17 17 N 1.28533 * 109.85771 * 179.69876 * 16 15 5 18 18 C 1.30297 * 110.05149 * 0.45323 * 17 16 15 19 19 C 1.50698 * 126.34644 * 179.82373 * 18 17 16 20 20 H 1.08991 * 110.75260 * 176.21656 * 19 18 17 21 21 C 1.55307 * 110.84542 * 299.68827 * 19 18 17 22 22 C 1.54950 * 100.98094 * 152.50274 * 21 19 18 23 23 O 1.43693 * 105.11306 * 323.61727 * 22 21 19 24 24 C 1.43241 * 109.99481 * 24.35569 * 23 22 21 25 25 N 1.36451 * 126.47552 * 248.30409 * 15 5 4 26 26 C 1.46498 * 127.13715 * 0.04646 * 25 15 5 27 27 C 1.53002 * 117.49515 * 3.75792 * 26 25 15 28 28 C 1.52996 * 117.50092 * 295.13340 * 26 25 15 29 29 H 1.09001 * 109.47233 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47198 * 299.99943 * 1 2 3 31 31 H 1.09003 * 109.46436 * 59.99829 * 1 2 3 32 32 H 1.09003 * 109.47002 * 59.99520 * 3 2 1 33 33 H 1.08996 * 109.47005 * 300.00277 * 3 2 1 34 34 H 1.08996 * 109.47124 * 307.09990 * 4 3 2 35 35 H 1.09007 * 109.46887 * 187.10113 * 4 3 2 36 36 H 1.09002 * 109.47346 * 62.04826 * 6 5 4 37 37 H 1.08998 * 109.47545 * 182.05308 * 6 5 4 38 38 H 0.97003 * 119.99283 * 180.02562 * 10 9 7 39 39 H 1.08994 * 111.12906 * 270.44600 * 21 19 18 40 40 H 1.09005 * 111.12376 * 34.56568 * 21 19 18 41 41 H 1.08998 * 110.30446 * 82.49279 * 22 21 19 42 42 H 1.09003 * 110.31144 * 204.66054 * 22 21 19 43 43 H 1.09000 * 109.83455 * 238.81389 * 24 23 22 44 44 H 1.08996 * 109.90223 * 117.88490 * 24 23 22 45 45 H 1.08997 * 115.55132 * 149.45761 * 26 25 15 46 46 H 1.09000 * 117.50405 * 359.97438 * 27 26 25 47 47 H 1.09001 * 117.49568 * 145.01987 * 27 26 25 48 48 H 1.08997 * 117.49648 * 214.97404 * 28 26 25 49 49 H 1.08998 * 117.49934 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9815 0.6084 -1.2749 6 6 3.6671 -0.8248 -1.3438 7 6 4.3216 -1.5388 -0.1892 8 1 4.8456 -0.9740 0.5678 9 6 4.2513 -2.9128 -0.0992 10 7 4.7365 -3.5282 0.9571 11 14 3.4674 -3.9002 -1.4774 12 1 4.5216 -4.3679 -2.4129 13 1 2.7581 -5.0727 -0.9049 14 1 2.4991 -3.0453 -2.2101 15 6 5.3350 0.8301 -1.4737 16 7 6.3211 0.2972 -0.7914 17 7 7.4461 0.7183 -1.2488 18 6 7.2458 1.5453 -2.2355 19 6 8.3075 2.2572 -3.0337 20 1 7.8601 2.8362 -3.8415 21 6 9.1730 3.1642 -2.1171 22 6 10.5103 3.1842 -2.8995 23 8 10.6402 1.8646 -3.4531 24 6 9.3487 1.2592 -3.5844 25 7 5.8940 1.6430 -2.4163 26 6 5.1915 2.4529 -3.4148 27 6 3.6624 2.4663 -3.3645 28 6 4.3845 1.7131 -4.4836 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6887 1.8463 -0.8899 34 1 3.8484 0.5380 0.8205 35 1 3.9782 2.1725 0.1277 36 1 2.5872 -0.9629 -1.2912 37 1 4.0404 -1.2340 -2.2826 38 1 4.6873 -4.4949 1.0202 39 1 8.7479 4.1648 -2.0401 40 1 9.3015 2.7177 -1.1310 41 1 10.4709 3.9264 -3.6968 42 1 11.3401 3.3959 -2.2251 43 1 9.3140 0.3336 -3.0097 44 1 9.1418 1.0504 -4.6340 45 1 5.6937 3.3738 -3.7109 46 1 3.1790 1.8722 -2.5888 47 1 3.1584 3.3962 -3.6275 48 1 4.3555 2.1477 -5.4828 49 1 4.3759 0.6239 -4.4436 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001396108401.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:24 Heat of formation + Delta-G solvation = 55.721678 kcal Electronic energy + Delta-G solvation = -31265.820680 eV Core-core repulsion = 27232.190403 eV Total energy + Delta-G solvation = -4033.630277 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.52546 -39.33000 -38.11315 -37.37020 -36.20152 -33.20726 -32.31710 -32.01526 -30.12029 -29.52090 -28.14580 -26.77298 -25.65744 -23.61549 -23.28720 -22.57335 -22.54114 -22.25952 -21.36855 -19.91406 -19.31916 -17.35714 -16.86454 -16.66367 -16.17711 -15.95197 -15.91255 -15.67394 -14.94844 -14.87833 -14.74270 -14.35424 -14.07248 -13.94998 -13.70635 -13.28834 -13.09651 -12.33286 -12.29110 -12.12709 -11.92331 -11.68691 -11.60349 -11.50833 -11.43921 -11.37319 -11.27749 -11.16932 -10.94061 -10.85741 -10.69061 -10.57148 -10.28310 -10.06390 -9.78568 -9.58846 -9.33836 -9.16365 -9.04614 -8.38562 -8.33331 -7.74410 -5.85555 -3.79613 2.10042 2.56127 3.37628 3.44162 3.45272 3.46290 3.69571 3.74778 4.20901 4.26142 4.36464 4.49205 4.56990 4.60278 4.68644 4.77536 4.86732 4.93302 5.02107 5.07871 5.37550 5.42020 5.47838 5.53610 5.56555 5.57346 5.57933 5.61136 5.67156 5.69230 5.75049 5.86336 5.91232 5.95274 5.97949 5.99991 6.08156 6.25847 6.36496 6.52229 6.63285 6.79049 6.88948 7.14060 7.26589 7.42488 7.63356 7.87412 8.04831 8.65287 9.24788 9.43191 9.75807 11.28193 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012063 B = 0.004318 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.564314 B = 6482.617247 C = 7595.777712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.356 6.356 3 C 0.073 3.927 4 C 0.062 3.938 5 N -0.460 5.460 6 C 0.161 3.839 7 C -0.519 4.519 8 H 0.093 0.907 9 C 0.077 3.923 10 N -0.897 5.897 11 Si 0.865 3.135 12 H -0.284 1.284 13 H -0.288 1.288 14 H -0.266 1.266 15 C 0.368 3.632 16 N -0.258 5.258 17 N -0.283 5.283 18 C 0.159 3.841 19 C -0.025 4.025 20 H 0.095 0.905 21 C -0.144 4.144 22 C 0.053 3.947 23 O -0.381 6.381 24 C 0.064 3.936 25 N -0.446 5.446 26 C 0.053 3.947 27 C -0.176 4.176 28 C -0.176 4.176 29 H 0.081 0.919 30 H 0.033 0.967 31 H 0.033 0.967 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.012 0.988 38 H 0.259 0.741 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.060 0.940 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.070 0.930 45 H 0.133 0.867 46 H 0.149 0.851 47 H 0.099 0.901 48 H 0.102 0.898 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.594 18.246 -10.295 21.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.274 6.274 3 C -0.005 4.005 4 C -0.066 4.066 5 N -0.186 5.186 6 C 0.036 3.964 7 C -0.557 4.557 8 H 0.111 0.889 9 C -0.125 4.125 10 N -0.536 5.536 11 Si 0.693 3.307 12 H -0.210 1.210 13 H -0.214 1.214 14 H -0.190 1.190 15 C 0.014 3.986 16 N -0.100 5.100 17 N -0.124 5.124 18 C -0.107 4.107 19 C -0.046 4.046 20 H 0.113 0.887 21 C -0.183 4.183 22 C -0.023 4.023 23 O -0.300 6.300 24 C -0.013 4.013 25 N -0.140 5.140 26 C -0.052 4.052 27 C -0.214 4.214 28 C -0.214 4.214 29 H 0.100 0.900 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.030 0.970 38 H 0.069 0.931 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.078 0.922 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.089 0.911 45 H 0.150 0.850 46 H 0.167 0.833 47 H 0.117 0.883 48 H 0.121 0.879 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.821 17.177 -9.599 19.694 hybrid contribution -1.181 -0.010 -1.214 1.694 sum -2.002 17.167 -10.813 20.387 Atomic orbital electron populations 1.22691 0.82918 1.02370 0.98870 1.88298 1.17874 1.26444 1.94830 1.22463 0.93393 0.85464 0.99163 1.22161 0.93048 0.99130 0.92223 1.59541 1.05420 1.20613 1.33006 1.20612 0.99160 0.79647 0.96971 1.21527 1.33235 0.92401 1.08573 0.88908 1.24773 0.95057 0.97622 0.95024 1.69924 1.46998 1.08705 1.28004 0.87042 0.79813 0.80434 0.83417 1.20982 1.21419 1.19042 1.22711 0.93129 0.92919 0.89871 1.75256 0.93662 1.19014 1.22052 1.74130 1.20323 1.09533 1.08406 1.23974 0.82115 1.03381 1.01215 1.20887 0.92042 0.95627 0.96022 0.88726 1.23349 0.94502 0.99965 1.00447 1.23362 0.97549 0.85165 0.96242 1.88423 1.27732 1.29157 1.84665 1.23156 0.80983 0.96509 1.00659 1.45795 1.06303 1.35307 1.26560 1.21766 0.93185 0.96150 0.94112 1.23972 0.91403 1.03203 1.02798 1.23356 1.02937 1.00778 0.94336 0.90041 0.94810 0.94857 0.93329 0.93534 0.89380 0.91427 0.91003 0.97000 0.93143 0.89814 0.88763 0.92228 0.89422 0.89465 0.91133 0.84984 0.83338 0.88315 0.87935 0.88045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.50 16 2 O -0.36 -6.45 7.77 -35.23 -0.27 -6.72 16 3 C 0.07 1.10 6.22 37.16 0.23 1.33 16 4 C 0.06 1.12 5.18 -3.83 -0.02 1.10 16 5 N -0.46 -9.05 1.81 -175.88 -0.32 -9.37 16 6 C 0.16 3.82 3.66 -4.97 -0.02 3.80 16 7 C -0.52 -14.65 7.55 -34.44 -0.26 -14.91 16 8 H 0.09 2.90 5.75 -52.48 -0.30 2.60 16 9 C 0.08 2.27 5.47 -17.82 -0.10 2.18 16 10 N -0.90 -28.46 13.96 55.43 0.77 -27.69 16 11 Si 0.87 22.23 27.42 -169.99 -4.66 17.57 16 12 H -0.28 -7.39 7.11 56.52 0.40 -6.99 16 13 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 14 H -0.27 -6.44 6.65 56.52 0.38 -6.06 16 15 C 0.37 7.61 6.16 -318.87 -1.96 5.64 16 16 N -0.26 -6.25 10.08 30.32 0.31 -5.95 16 17 N -0.28 -6.10 11.83 32.99 0.39 -5.71 16 18 C 0.16 2.70 6.65 -154.02 -1.02 1.68 16 19 C -0.02 -0.30 3.39 -89.82 -0.30 -0.61 16 20 H 0.09 0.92 7.29 -51.93 -0.38 0.54 16 21 C -0.14 -1.55 6.60 -24.48 -0.16 -1.71 16 22 C 0.05 0.53 7.78 38.19 0.30 0.82 16 23 O -0.38 -5.10 11.36 -35.23 -0.40 -5.50 16 24 C 0.06 0.86 7.40 37.88 0.28 1.14 16 25 N -0.45 -7.46 3.14 -107.01 -0.34 -7.80 16 26 C 0.05 0.65 6.47 -67.93 -0.44 0.21 16 27 C -0.18 -2.02 9.93 -26.73 -0.27 -2.28 16 28 C -0.18 -2.02 10.45 -26.73 -0.28 -2.30 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.61 7.61 -51.93 -0.40 0.21 16 34 H 0.09 1.97 5.91 -51.93 -0.31 1.66 16 35 H 0.07 1.10 7.95 -51.92 -0.41 0.68 16 36 H 0.07 1.71 5.14 -51.93 -0.27 1.45 16 37 H 0.01 0.30 7.10 -51.93 -0.37 -0.07 16 38 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.09 1.23 8.01 -51.93 -0.42 0.81 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.09 1.40 7.57 -51.93 -0.39 1.00 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.13 1.19 7.67 -51.93 -0.40 0.79 16 46 H 0.15 2.10 4.60 -51.93 -0.24 1.86 16 47 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 48 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 384.63 15.07 5.80 5.80 Total: -1.00 -35.71 384.63 -9.32 -45.03 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -7.69 Total: 2.76 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -2.91 Total: -2.42 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: 0.82 Total: -56.52 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -0.67 Total: -12.22 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.66 Total: 17.57 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.71 -9.32 -45.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001396108401.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.755 kcal (2) G-P(sol) polarization free energy of solvation -35.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds