Wall clock time and date at job start Tue Mar 31 2020 19:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 114.00339 * 2 1 4 4 C 1.53001 * 109.47242 * 179.97438 * 3 2 1 5 5 N 1.46891 * 109.46873 * 67.10311 * 4 3 2 6 6 C 1.46899 * 111.00188 * 286.89249 * 5 4 3 7 7 C 1.50703 * 109.46998 * 302.05011 * 6 5 4 8 8 H 1.08004 * 119.99722 * 4.89589 * 7 6 5 9 9 C 1.37876 * 120.00081 * 184.88813 * 7 6 5 10 10 N 1.31520 * 119.99780 * 184.99032 * 9 7 6 11 11 Si 1.86796 * 119.99943 * 4.99784 * 9 7 6 12 12 H 1.48500 * 109.47320 * 94.90886 * 11 9 7 13 13 H 1.48507 * 109.46974 * 214.90229 * 11 9 7 14 14 H 1.48498 * 109.47275 * 334.90222 * 11 9 7 15 15 C 1.38584 * 111.00284 * 162.93798 * 5 4 3 16 16 N 1.31221 * 126.46923 * 68.33753 * 15 5 4 17 17 N 1.28533 * 109.85771 * 179.69876 * 16 15 5 18 18 C 1.30297 * 110.05149 * 0.45323 * 17 16 15 19 19 C 1.50698 * 126.34644 * 179.82373 * 18 17 16 20 20 H 1.08991 * 110.75260 * 176.21656 * 19 18 17 21 21 C 1.55307 * 110.84542 * 299.68827 * 19 18 17 22 22 C 1.54950 * 100.98094 * 152.50274 * 21 19 18 23 23 O 1.43693 * 105.11306 * 323.61727 * 22 21 19 24 24 C 1.43241 * 109.99481 * 24.35569 * 23 22 21 25 25 N 1.36451 * 126.47552 * 248.30409 * 15 5 4 26 26 C 1.46498 * 127.13715 * 0.04646 * 25 15 5 27 27 C 1.53002 * 117.49515 * 3.75792 * 26 25 15 28 28 C 1.52996 * 117.50092 * 295.13340 * 26 25 15 29 29 H 1.09001 * 109.47233 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47198 * 299.99943 * 1 2 3 31 31 H 1.09003 * 109.46436 * 59.99829 * 1 2 3 32 32 H 1.09003 * 109.47002 * 59.99520 * 3 2 1 33 33 H 1.08996 * 109.47005 * 300.00277 * 3 2 1 34 34 H 1.08996 * 109.47124 * 307.09990 * 4 3 2 35 35 H 1.09007 * 109.46887 * 187.10113 * 4 3 2 36 36 H 1.09002 * 109.47346 * 62.04826 * 6 5 4 37 37 H 1.08998 * 109.47545 * 182.05308 * 6 5 4 38 38 H 0.97003 * 119.99283 * 180.02562 * 10 9 7 39 39 H 1.08994 * 111.12906 * 270.44600 * 21 19 18 40 40 H 1.09005 * 111.12376 * 34.56568 * 21 19 18 41 41 H 1.08998 * 110.30446 * 82.49279 * 22 21 19 42 42 H 1.09003 * 110.31144 * 204.66054 * 22 21 19 43 43 H 1.09000 * 109.83455 * 238.81389 * 24 23 22 44 44 H 1.08996 * 109.90223 * 117.88490 * 24 23 22 45 45 H 1.08997 * 115.55132 * 149.45761 * 26 25 15 46 46 H 1.09000 * 117.50405 * 359.97438 * 27 26 25 47 47 H 1.09001 * 117.49568 * 145.01987 * 27 26 25 48 48 H 1.08997 * 117.49648 * 214.97404 * 28 26 25 49 49 H 1.08998 * 117.49934 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9815 0.6084 -1.2749 6 6 3.6671 -0.8248 -1.3438 7 6 4.3216 -1.5388 -0.1892 8 1 4.8456 -0.9740 0.5678 9 6 4.2513 -2.9128 -0.0992 10 7 4.7365 -3.5282 0.9571 11 14 3.4674 -3.9002 -1.4774 12 1 4.5216 -4.3679 -2.4129 13 1 2.7581 -5.0727 -0.9049 14 1 2.4991 -3.0453 -2.2101 15 6 5.3350 0.8301 -1.4737 16 7 6.3211 0.2972 -0.7914 17 7 7.4461 0.7183 -1.2488 18 6 7.2458 1.5453 -2.2355 19 6 8.3075 2.2572 -3.0337 20 1 7.8601 2.8362 -3.8415 21 6 9.1730 3.1642 -2.1171 22 6 10.5103 3.1842 -2.8995 23 8 10.6402 1.8646 -3.4531 24 6 9.3487 1.2592 -3.5844 25 7 5.8940 1.6430 -2.4163 26 6 5.1915 2.4529 -3.4148 27 6 3.6624 2.4663 -3.3645 28 6 4.3845 1.7131 -4.4836 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6887 1.8463 -0.8899 34 1 3.8484 0.5380 0.8205 35 1 3.9782 2.1725 0.1277 36 1 2.5872 -0.9629 -1.2912 37 1 4.0404 -1.2340 -2.2826 38 1 4.6873 -4.4949 1.0202 39 1 8.7479 4.1648 -2.0401 40 1 9.3015 2.7177 -1.1310 41 1 10.4709 3.9264 -3.6968 42 1 11.3401 3.3959 -2.2251 43 1 9.3140 0.3336 -3.0097 44 1 9.1418 1.0504 -4.6340 45 1 5.6937 3.3738 -3.7109 46 1 3.1790 1.8722 -2.5888 47 1 3.1584 3.3962 -3.6275 48 1 4.3555 2.1477 -5.4828 49 1 4.3759 0.6239 -4.4436 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001396108401.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:22 Heat of formation + Delta-G solvation = 32.143498 kcal Electronic energy + Delta-G solvation = -31266.843107 eV Core-core repulsion = 27232.190403 eV Total energy + Delta-G solvation = -4034.652704 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.97821 -40.32178 -39.51386 -38.40909 -37.63767 -34.51538 -34.28847 -33.34606 -31.36499 -30.81644 -29.71983 -28.32082 -26.92701 -24.88797 -24.49751 -24.29689 -23.45307 -23.13496 -22.76571 -21.12813 -20.82553 -18.97137 -18.41290 -17.90599 -17.38498 -17.22942 -17.06098 -17.01311 -16.41971 -16.10659 -15.86825 -15.65798 -15.57440 -15.26773 -14.89241 -14.45958 -14.28220 -14.22876 -13.76336 -13.33238 -13.19516 -13.12614 -12.83160 -12.67619 -12.61455 -12.54712 -12.49846 -12.44808 -12.38349 -12.36468 -12.06789 -11.90321 -11.75606 -11.64250 -11.41632 -10.99510 -10.67849 -10.54126 -10.46284 -10.32550 -9.92616 -9.46216 -8.15231 -6.12036 0.72673 1.26810 1.31222 1.32041 1.42342 1.91323 2.39122 2.75691 2.78089 2.91053 3.07013 3.20138 3.26999 3.53562 3.60579 3.73329 3.87339 3.96564 4.01025 4.05717 4.13736 4.28042 4.32067 4.42784 4.49290 4.52526 4.60636 4.61870 4.69296 4.74472 4.78393 4.78789 4.82022 4.86470 4.91386 4.95137 4.97709 5.03234 5.08119 5.19737 5.21142 5.32859 5.49064 5.55501 5.77942 5.88987 5.98036 6.37892 6.43496 6.53151 6.94665 7.45753 7.90425 9.02504 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012063 B = 0.004318 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.564314 B = 6482.617247 C = 7595.777712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.403 6.403 3 C 0.079 3.921 4 C 0.064 3.936 5 N -0.432 5.432 6 C 0.176 3.824 7 C -0.501 4.501 8 H 0.050 0.950 9 C 0.008 3.992 10 N -0.953 5.953 11 Si 0.931 3.069 12 H -0.289 1.289 13 H -0.283 1.283 14 H -0.238 1.238 15 C 0.352 3.648 16 N -0.327 5.327 17 N -0.336 5.336 18 C 0.184 3.816 19 C -0.022 4.022 20 H 0.140 0.860 21 C -0.139 4.139 22 C 0.052 3.948 23 O -0.402 6.402 24 C 0.066 3.934 25 N -0.439 5.439 26 C 0.035 3.965 27 C -0.171 4.171 28 C -0.170 4.170 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.035 0.965 35 H 0.086 0.914 36 H 0.082 0.918 37 H -0.001 1.001 38 H 0.257 0.743 39 H 0.117 0.883 40 H 0.060 0.940 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.045 0.955 44 H 0.092 0.908 45 H 0.178 0.822 46 H 0.121 0.879 47 H 0.139 0.861 48 H 0.142 0.858 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.283 22.193 -14.120 26.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.323 6.323 3 C 0.002 3.998 4 C -0.064 4.064 5 N -0.157 5.157 6 C 0.050 3.950 7 C -0.540 4.540 8 H 0.068 0.932 9 C -0.188 4.188 10 N -0.595 5.595 11 Si 0.756 3.244 12 H -0.216 1.216 13 H -0.209 1.209 14 H -0.161 1.161 15 C -0.004 4.004 16 N -0.168 5.168 17 N -0.176 5.176 18 C -0.084 4.084 19 C -0.042 4.042 20 H 0.158 0.842 21 C -0.178 4.178 22 C -0.024 4.024 23 O -0.322 6.322 24 C -0.011 4.011 25 N -0.131 5.131 26 C -0.068 4.068 27 C -0.208 4.208 28 C -0.208 4.208 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.053 0.947 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.017 0.983 38 H 0.066 0.934 39 H 0.135 0.865 40 H 0.079 0.921 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.063 0.937 44 H 0.110 0.890 45 H 0.195 0.805 46 H 0.139 0.861 47 H 0.157 0.843 48 H 0.160 0.840 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.533 21.171 -13.445 25.207 hybrid contribution -0.553 -1.084 0.011 1.217 sum -3.086 20.087 -13.435 24.362 Atomic orbital electron populations 1.22855 0.80555 1.02824 1.00901 1.88188 1.20599 1.28252 1.95239 1.22506 0.90562 0.84995 1.01745 1.22188 0.95897 0.98590 0.89680 1.59699 1.04957 1.17679 1.33395 1.20297 0.98876 0.81828 0.93980 1.21724 1.31386 0.92320 1.08591 0.93161 1.25679 0.96374 0.99139 0.97620 1.70104 1.49914 1.08852 1.30655 0.85964 0.79190 0.79103 0.80099 1.21574 1.20855 1.16066 1.22795 0.92862 0.93936 0.90844 1.75093 0.95349 1.21620 1.24785 1.73990 1.20081 1.12283 1.11281 1.24824 0.83219 1.00978 0.99358 1.21216 0.90679 0.95504 0.96838 0.84227 1.23339 0.95007 1.00887 0.98538 1.23618 0.97196 0.84268 0.97300 1.88403 1.27708 1.31082 1.84980 1.23043 0.81597 0.95331 1.01147 1.45998 1.06101 1.34737 1.26271 1.22492 0.93997 0.97056 0.93239 1.23987 0.90661 1.04409 1.01766 1.23388 1.02410 0.98853 0.96189 0.90517 0.93049 0.92428 0.90923 0.90433 0.94676 0.89540 0.90067 0.98330 0.93372 0.86485 0.92113 0.88728 0.88581 0.93665 0.89003 0.80483 0.86133 0.84317 0.84031 0.91708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 11.01 113.37 1.25 1.87 16 2 O -0.40 -14.29 7.77 -148.98 -1.16 -15.45 16 3 C 0.08 2.26 6.22 71.98 0.45 2.71 16 4 C 0.06 2.38 5.18 86.31 0.45 2.82 16 5 N -0.43 -17.23 1.81 -710.37 -1.28 -18.52 16 6 C 0.18 8.58 3.66 85.56 0.31 8.90 16 7 C -0.50 -30.02 7.55 25.60 0.19 -29.82 16 8 H 0.05 3.42 5.75 -2.91 -0.02 3.41 16 9 C 0.01 0.47 5.47 84.65 0.46 0.94 16 10 N -0.95 -64.26 13.96 21.45 0.30 -63.96 16 11 Si 0.93 47.43 27.42 68.60 1.88 49.32 16 12 H -0.29 -14.88 7.11 99.48 0.71 -14.17 16 13 H -0.28 -14.05 7.11 99.48 0.71 -13.34 16 14 H -0.24 -10.89 6.65 99.48 0.66 -10.23 16 15 C 0.35 14.95 6.16 260.11 1.60 16.55 16 16 N -0.33 -16.94 10.08 -58.00 -0.58 -17.53 16 17 N -0.34 -15.41 11.83 -49.54 -0.59 -16.00 16 18 C 0.18 6.21 6.65 137.64 0.92 7.12 16 19 C -0.02 -0.48 3.39 -10.28 -0.03 -0.51 16 20 H 0.14 1.90 7.29 -2.39 -0.02 1.88 16 21 C -0.14 -2.67 6.60 32.05 0.21 -2.46 16 22 C 0.05 0.87 7.78 72.65 0.57 1.44 16 23 O -0.40 -10.21 11.36 -148.98 -1.69 -11.90 16 24 C 0.07 1.71 7.40 72.45 0.54 2.25 16 25 N -0.44 -14.17 3.14 -492.47 -1.54 -15.71 16 26 C 0.03 0.70 6.47 44.99 0.29 0.99 16 27 C -0.17 -3.17 9.93 30.60 0.30 -2.86 16 28 C -0.17 -3.24 10.45 30.59 0.32 -2.92 16 29 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.08 1.77 7.61 -2.39 -0.02 1.75 16 34 H 0.03 1.69 5.91 -2.39 -0.01 1.67 16 35 H 0.09 2.82 7.95 -2.38 -0.02 2.80 16 36 H 0.08 3.87 5.14 -2.39 -0.01 3.85 16 37 H 0.00 -0.07 7.10 -2.39 -0.02 -0.09 16 38 H 0.26 16.38 8.31 -92.71 -0.77 15.61 16 39 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.06 1.59 8.01 -2.38 -0.02 1.57 16 41 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.04 1.53 7.57 -2.39 -0.02 1.51 16 44 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.18 1.98 7.67 -2.39 -0.02 1.96 16 46 H 0.12 3.04 4.60 -2.39 -0.01 3.03 16 47 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 49 H 0.06 1.75 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -89.18 384.63 4.07 -85.11 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.91 Total: 17.63 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 7.82 Total: 7.01 kcal Atomic # 7 Polarization: -128.02 SS G_CDS: -3.70 Total: -131.72 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -2.85 Total: -27.35 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 1.88 Total: 49.32 kcal Total: -89.18 4.07 -85.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001396108401.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.255 kcal (2) G-P(sol) polarization free energy of solvation -89.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds