Wall clock time and date at job start Tue Mar 31 2020 19:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 113.99863 * 2 1 4 4 C 1.52991 * 109.47156 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.47241 * 64.99710 * 4 3 2 6 6 C 1.46906 * 111.00144 * 193.95021 * 5 4 3 7 7 C 1.50694 * 109.46877 * 71.80235 * 6 5 4 8 8 H 1.08009 * 120.00082 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99999 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00152 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99932 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47026 * 90.00124 * 11 9 7 13 13 H 1.48501 * 109.47219 * 209.99872 * 11 9 7 14 14 H 1.48499 * 109.47265 * 329.99986 * 11 9 7 15 15 C 1.38580 * 110.99750 * 70.00142 * 5 4 3 16 16 N 1.31214 * 126.47943 * 18.28328 * 15 5 4 17 17 N 1.28522 * 109.86505 * 180.25876 * 16 15 5 18 18 C 1.30301 * 110.05344 * 359.74690 * 17 16 15 19 19 C 1.50700 * 126.34566 * 179.97438 * 18 17 16 20 20 H 1.08999 * 110.26966 * 165.68221 * 19 18 17 21 21 C 1.54943 * 110.31122 * 287.87377 * 19 18 17 22 22 C 1.55309 * 100.94055 * 155.35965 * 21 19 18 23 23 C 1.54385 * 102.25413 * 325.87234 * 22 21 19 24 24 O 1.43244 * 107.58718 * 21.35353 * 23 22 21 25 25 N 1.36459 * 126.47133 * 198.11708 * 15 5 4 26 26 C 1.46500 * 127.13551 * 0.02562 * 25 15 5 27 27 C 1.53007 * 117.51530 * 46.22774 * 26 25 15 28 28 C 1.53005 * 60.00047 * 107.47727 * 27 26 25 29 29 H 1.09009 * 109.46446 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47474 * 299.99759 * 1 2 3 31 31 H 1.08998 * 109.47025 * 60.00606 * 1 2 3 32 32 H 1.08999 * 109.46767 * 59.99040 * 3 2 1 33 33 H 1.09002 * 109.46672 * 299.99716 * 3 2 1 34 34 H 1.09001 * 109.47521 * 304.99480 * 4 3 2 35 35 H 1.09007 * 109.47288 * 184.99794 * 4 3 2 36 36 H 1.08998 * 109.46948 * 191.80144 * 6 5 4 37 37 H 1.08997 * 109.47181 * 311.80644 * 6 5 4 38 38 H 0.97000 * 120.00181 * 180.02562 * 10 9 7 39 39 H 1.08991 * 111.13046 * 273.28308 * 21 19 18 40 40 H 1.09000 * 111.12258 * 37.45144 * 21 19 18 41 41 H 1.08992 * 110.85400 * 207.67727 * 22 21 19 42 42 H 1.09004 * 111.01656 * 84.13507 * 22 21 19 43 43 H 1.08994 * 109.82956 * 261.84275 * 23 22 21 44 44 H 1.08995 * 109.83107 * 140.86572 * 23 22 21 45 45 H 1.08999 * 115.55455 * 260.52565 * 26 25 15 46 46 H 1.09001 * 117.50097 * 214.96714 * 27 26 25 47 47 H 1.09003 * 117.49742 * 359.97438 * 27 26 25 48 48 H 1.08998 * 117.49821 * 252.51156 * 28 27 26 49 49 H 1.09008 * 117.49617 * 107.48604 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9778 0.5624 -1.2542 6 6 5.3783 0.1286 -1.1616 7 6 5.4730 -1.0735 -0.2578 8 1 4.5819 -1.4754 0.2016 9 6 6.6973 -1.6604 -0.0172 10 7 7.7824 -1.1708 -0.5760 11 14 6.8147 -3.1501 1.1038 12 1 6.6579 -4.3885 0.2994 13 1 8.1390 -3.1607 1.7758 14 1 5.7408 -3.0853 2.1273 15 6 3.7939 1.4210 -2.3263 16 7 3.6199 2.7201 -2.2644 17 7 3.4755 3.1983 -3.4485 18 6 3.5535 2.2414 -4.3295 19 6 3.4348 2.3916 -5.8242 20 1 3.7860 1.4886 -6.3236 21 6 1.9670 2.6911 -6.2198 22 6 2.1700 3.4196 -7.5763 23 6 3.4917 4.1827 -7.3438 24 8 4.1843 3.5323 -6.2718 25 7 3.7626 1.0756 -3.6461 26 6 3.9147 -0.2667 -4.2129 27 6 3.1202 -1.4021 -3.5643 28 6 2.7091 -0.8682 -4.9380 29 1 -0.3632 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.6884 1.8465 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8508 0.5687 0.8427 35 1 3.9784 2.1767 0.0902 36 1 5.7439 -0.1336 -2.1544 37 1 5.9833 0.9383 -0.7537 38 1 8.6436 -1.5839 -0.4071 39 1 1.3992 1.7698 -6.3497 40 1 1.4893 3.3452 -5.4904 41 1 1.3513 4.1122 -7.7711 42 1 2.2734 2.7044 -8.3924 43 1 3.2789 5.2168 -7.0730 44 1 4.0995 4.1536 -8.2481 45 1 4.9052 -0.5036 -4.6013 46 1 3.5879 -2.3859 -3.5261 47 1 2.4843 -1.1505 -2.7154 48 1 1.8027 -0.2653 -4.9930 49 1 2.9065 -1.5007 -5.8035 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001396108498.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:15 Heat of formation + Delta-G solvation = 36.406927 kcal Electronic energy + Delta-G solvation = -31133.799827 eV Core-core repulsion = 27099.331999 eV Total energy + Delta-G solvation = -4034.467828 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.51889 -39.37098 -37.86232 -37.30192 -36.28487 -32.75391 -32.47511 -32.22390 -30.95190 -29.46757 -28.12095 -26.40544 -25.75198 -23.79307 -23.31414 -22.49103 -22.31137 -21.86458 -21.79807 -19.92667 -19.52691 -17.32244 -16.85463 -16.60314 -16.24384 -15.95867 -15.62963 -15.53703 -15.36946 -14.91231 -14.62220 -14.41496 -14.15022 -13.94738 -13.48000 -13.32542 -13.12699 -12.73177 -12.21683 -12.02098 -12.00543 -11.86731 -11.57076 -11.43149 -11.39543 -11.23784 -11.13651 -11.11300 -10.93525 -10.84213 -10.76787 -10.52078 -10.39266 -10.12627 -9.96917 -9.72980 -9.57960 -9.46566 -9.28358 -8.80219 -8.51227 -7.45080 -6.12427 -4.15327 2.16539 2.59183 3.26850 3.27787 3.34628 3.39458 3.65959 3.89619 4.16327 4.19704 4.30656 4.45578 4.52026 4.67182 4.80354 4.81437 4.92077 4.98372 5.08751 5.11691 5.23602 5.39054 5.44408 5.46872 5.48767 5.55160 5.55890 5.59186 5.67184 5.70822 5.79114 5.80783 5.86904 5.89889 5.93543 6.14509 6.19817 6.29206 6.37893 6.47536 6.53213 6.88739 6.96092 7.07101 7.24245 7.53780 7.67591 7.82254 7.97784 8.34493 8.92712 9.28954 9.49414 10.98212 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011901 B = 0.004019 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.153512 B = 6966.090984 C = 7880.960048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.371 6.371 3 C 0.068 3.932 4 C 0.075 3.925 5 N -0.443 5.443 6 C 0.205 3.795 7 C -0.509 4.509 8 H 0.072 0.928 9 C 0.059 3.941 10 N -0.896 5.896 11 Si 0.901 3.099 12 H -0.280 1.280 13 H -0.287 1.287 14 H -0.271 1.271 15 C 0.395 3.605 16 N -0.346 5.346 17 N -0.264 5.264 18 C 0.150 3.850 19 C 0.184 3.816 20 H 0.086 0.914 21 C -0.142 4.142 22 C -0.154 4.154 23 C 0.051 3.949 24 O -0.362 6.362 25 N -0.445 5.445 26 C 0.055 3.945 27 C -0.132 4.132 28 C -0.183 4.183 29 H 0.080 0.920 30 H 0.034 0.966 31 H 0.031 0.969 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.105 0.895 35 H 0.066 0.934 36 H 0.031 0.969 37 H 0.006 0.994 38 H 0.263 0.737 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.132 0.868 46 H 0.112 0.888 47 H 0.118 0.882 48 H 0.095 0.905 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.989 3.147 -11.923 18.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C -0.009 4.009 4 C -0.052 4.052 5 N -0.168 5.168 6 C 0.082 3.918 7 C -0.547 4.547 8 H 0.090 0.910 9 C -0.143 4.143 10 N -0.535 5.535 11 Si 0.729 3.271 12 H -0.206 1.206 13 H -0.213 1.213 14 H -0.196 1.196 15 C 0.040 3.960 16 N -0.192 5.192 17 N -0.104 5.104 18 C -0.117 4.117 19 C 0.123 3.877 20 H 0.104 0.896 21 C -0.181 4.181 22 C -0.191 4.191 23 C -0.025 4.025 24 O -0.280 6.280 25 N -0.140 5.140 26 C -0.049 4.049 27 C -0.169 4.169 28 C -0.221 4.221 29 H 0.099 0.901 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.123 0.877 35 H 0.084 0.916 36 H 0.049 0.951 37 H 0.024 0.976 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.150 0.850 46 H 0.130 0.870 47 H 0.136 0.864 48 H 0.114 0.886 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.875 3.973 -11.318 18.342 hybrid contribution 0.544 -1.293 0.036 1.403 sum -13.331 2.681 -11.283 17.669 Atomic orbital electron populations 1.22651 0.82725 1.02008 0.99088 1.88053 1.17964 1.27760 1.95163 1.22601 0.94320 0.84395 0.99571 1.22054 0.92196 0.99342 0.91638 1.58971 1.26128 1.32201 0.99485 1.19890 0.77699 0.95918 0.98343 1.21065 0.93711 1.11962 1.27975 0.90999 1.24964 0.95471 0.97602 0.96233 1.69965 0.98671 1.40945 1.43923 0.86444 0.77380 0.82566 0.80741 1.20637 1.21335 1.19594 1.23076 0.98922 0.89708 0.84326 1.74648 1.25421 1.04186 1.14983 1.73832 1.16538 1.25007 0.95014 1.23979 1.09090 0.82391 0.96286 1.20739 0.91509 0.90635 0.84768 0.89585 1.23278 0.95786 1.01789 0.97219 1.23117 0.98353 1.00024 0.97644 1.23143 0.92334 0.96953 0.90113 1.88538 1.45127 1.42271 1.52028 1.45397 1.55119 1.07442 1.05993 1.21833 0.97583 0.80461 1.05048 1.23256 1.01057 0.97022 0.95602 1.23428 0.97425 1.03537 0.97721 0.90126 0.94754 0.95037 0.93345 0.93603 0.87684 0.91634 0.95080 0.97581 0.92729 0.89651 0.89384 0.89731 0.90338 0.91007 0.91212 0.85028 0.86985 0.86411 0.88625 0.87419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.53 10.65 -35.23 -0.38 -6.90 16 3 C 0.07 1.18 6.02 37.15 0.22 1.41 16 4 C 0.08 1.50 4.92 -3.83 -0.02 1.49 16 5 N -0.44 -9.61 3.85 -175.88 -0.68 -10.28 16 6 C 0.20 5.19 4.68 -4.98 -0.02 5.17 16 7 C -0.51 -13.48 8.40 -34.44 -0.29 -13.77 16 8 H 0.07 1.90 7.61 -52.48 -0.40 1.51 16 9 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 10 N -0.90 -25.76 13.29 55.43 0.74 -25.02 16 11 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 15 C 0.40 8.36 5.86 -318.87 -1.87 6.49 16 16 N -0.35 -7.62 10.50 30.32 0.32 -7.30 16 17 N -0.26 -5.52 12.18 32.99 0.40 -5.12 16 18 C 0.15 2.71 7.00 -154.01 -1.08 1.64 16 19 C 0.18 2.54 3.85 -26.86 -0.10 2.44 16 20 H 0.09 1.06 7.71 -51.93 -0.40 0.66 16 21 C -0.14 -1.49 6.56 -24.48 -0.16 -1.65 16 22 C -0.15 -1.23 7.02 -24.78 -0.17 -1.40 16 23 C 0.05 0.52 7.79 37.88 0.30 0.82 16 24 O -0.36 -5.46 11.03 -35.23 -0.39 -5.85 16 25 N -0.44 -8.25 3.10 -107.00 -0.33 -8.58 16 26 C 0.06 0.86 5.48 -67.92 -0.37 0.49 16 27 C -0.13 -1.95 9.88 -26.73 -0.26 -2.21 16 28 C -0.18 -2.10 10.45 -26.73 -0.28 -2.38 16 29 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 30 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.84 6.93 -51.93 -0.36 0.48 16 34 H 0.10 2.19 7.06 -51.93 -0.37 1.83 16 35 H 0.07 1.33 7.54 -51.93 -0.39 0.94 16 36 H 0.03 0.84 7.34 -51.93 -0.38 0.46 16 37 H 0.01 0.18 8.05 -51.93 -0.42 -0.24 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.09 1.06 8.05 -51.93 -0.42 0.64 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.13 2.03 8.14 -51.93 -0.42 1.61 16 46 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 47 H 0.12 2.02 7.96 -51.93 -0.41 1.61 16 48 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 49 H 0.11 0.95 8.14 -51.92 -0.42 0.52 16 LS Contribution 402.22 15.07 6.06 6.06 Total: -1.00 -32.71 402.22 -10.55 -43.26 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -8.18 Total: 2.28 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -3.10 Total: 1.58 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: 0.45 Total: -56.31 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -0.76 Total: -12.75 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.71 -10.55 -43.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001396108498.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.668 kcal (2) G-P(sol) polarization free energy of solvation -32.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds