Wall clock time and date at job start Tue Mar 31 2020 19:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 113.99863 * 2 1 4 4 C 1.52991 * 109.47156 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.47241 * 64.99710 * 4 3 2 6 6 C 1.46906 * 111.00144 * 193.95021 * 5 4 3 7 7 C 1.50694 * 109.46877 * 71.80235 * 6 5 4 8 8 H 1.08009 * 120.00082 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99999 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00152 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99932 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47026 * 90.00124 * 11 9 7 13 13 H 1.48501 * 109.47219 * 209.99872 * 11 9 7 14 14 H 1.48499 * 109.47265 * 329.99986 * 11 9 7 15 15 C 1.38580 * 110.99750 * 70.00142 * 5 4 3 16 16 N 1.31214 * 126.47943 * 18.28328 * 15 5 4 17 17 N 1.28522 * 109.86505 * 180.25876 * 16 15 5 18 18 C 1.30301 * 110.05344 * 359.74690 * 17 16 15 19 19 C 1.50700 * 126.34566 * 179.97438 * 18 17 16 20 20 H 1.08999 * 110.26966 * 165.68221 * 19 18 17 21 21 C 1.54943 * 110.31122 * 287.87377 * 19 18 17 22 22 C 1.55309 * 100.94055 * 155.35965 * 21 19 18 23 23 C 1.54385 * 102.25413 * 325.87234 * 22 21 19 24 24 O 1.43244 * 107.58718 * 21.35353 * 23 22 21 25 25 N 1.36459 * 126.47133 * 198.11708 * 15 5 4 26 26 C 1.46500 * 127.13551 * 0.02562 * 25 15 5 27 27 C 1.53007 * 117.51530 * 46.22774 * 26 25 15 28 28 C 1.53005 * 60.00047 * 107.47727 * 27 26 25 29 29 H 1.09009 * 109.46446 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47474 * 299.99759 * 1 2 3 31 31 H 1.08998 * 109.47025 * 60.00606 * 1 2 3 32 32 H 1.08999 * 109.46767 * 59.99040 * 3 2 1 33 33 H 1.09002 * 109.46672 * 299.99716 * 3 2 1 34 34 H 1.09001 * 109.47521 * 304.99480 * 4 3 2 35 35 H 1.09007 * 109.47288 * 184.99794 * 4 3 2 36 36 H 1.08998 * 109.46948 * 191.80144 * 6 5 4 37 37 H 1.08997 * 109.47181 * 311.80644 * 6 5 4 38 38 H 0.97000 * 120.00181 * 180.02562 * 10 9 7 39 39 H 1.08991 * 111.13046 * 273.28308 * 21 19 18 40 40 H 1.09000 * 111.12258 * 37.45144 * 21 19 18 41 41 H 1.08992 * 110.85400 * 207.67727 * 22 21 19 42 42 H 1.09004 * 111.01656 * 84.13507 * 22 21 19 43 43 H 1.08994 * 109.82956 * 261.84275 * 23 22 21 44 44 H 1.08995 * 109.83107 * 140.86572 * 23 22 21 45 45 H 1.08999 * 115.55455 * 260.52565 * 26 25 15 46 46 H 1.09001 * 117.50097 * 214.96714 * 27 26 25 47 47 H 1.09003 * 117.49742 * 359.97438 * 27 26 25 48 48 H 1.08998 * 117.49821 * 252.51156 * 28 27 26 49 49 H 1.09008 * 117.49617 * 107.48604 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9778 0.5624 -1.2542 6 6 5.3783 0.1286 -1.1616 7 6 5.4730 -1.0735 -0.2578 8 1 4.5819 -1.4754 0.2016 9 6 6.6973 -1.6604 -0.0172 10 7 7.7824 -1.1708 -0.5760 11 14 6.8147 -3.1501 1.1038 12 1 6.6579 -4.3885 0.2994 13 1 8.1390 -3.1607 1.7758 14 1 5.7408 -3.0853 2.1273 15 6 3.7939 1.4210 -2.3263 16 7 3.6199 2.7201 -2.2644 17 7 3.4755 3.1983 -3.4485 18 6 3.5535 2.2414 -4.3295 19 6 3.4348 2.3916 -5.8242 20 1 3.7860 1.4886 -6.3236 21 6 1.9670 2.6911 -6.2198 22 6 2.1700 3.4196 -7.5763 23 6 3.4917 4.1827 -7.3438 24 8 4.1843 3.5323 -6.2718 25 7 3.7626 1.0756 -3.6461 26 6 3.9147 -0.2667 -4.2129 27 6 3.1202 -1.4021 -3.5643 28 6 2.7091 -0.8682 -4.9380 29 1 -0.3632 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.6884 1.8465 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8508 0.5687 0.8427 35 1 3.9784 2.1767 0.0902 36 1 5.7439 -0.1336 -2.1544 37 1 5.9833 0.9383 -0.7537 38 1 8.6436 -1.5839 -0.4071 39 1 1.3992 1.7698 -6.3497 40 1 1.4893 3.3452 -5.4904 41 1 1.3513 4.1122 -7.7711 42 1 2.2734 2.7044 -8.3924 43 1 3.2789 5.2168 -7.0730 44 1 4.0995 4.1536 -8.2481 45 1 4.9052 -0.5036 -4.6013 46 1 3.5879 -2.3859 -3.5261 47 1 2.4843 -1.1505 -2.7154 48 1 1.8027 -0.2653 -4.9930 49 1 2.9065 -1.5007 -5.8035 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001396108498.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:14 Heat of formation + Delta-G solvation = 16.288151 kcal Electronic energy + Delta-G solvation = -31134.672242 eV Core-core repulsion = 27099.331999 eV Total energy + Delta-G solvation = -4035.340243 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.03587 -40.34672 -39.33544 -38.52230 -37.83074 -34.80763 -33.84191 -33.17109 -32.17238 -31.09268 -29.54549 -28.03416 -27.05361 -25.14943 -24.61766 -24.16356 -23.62991 -23.18455 -22.57670 -21.22990 -21.04472 -18.73983 -18.58144 -17.75901 -17.55899 -17.28636 -17.04929 -16.90501 -16.69342 -16.37479 -15.95808 -15.70760 -15.67292 -15.13037 -14.76480 -14.63708 -14.26071 -14.15473 -13.92239 -13.65207 -13.12745 -12.87601 -12.76549 -12.74796 -12.70403 -12.53492 -12.48373 -12.46705 -12.27992 -12.18545 -12.11355 -12.02361 -11.84841 -11.72926 -11.61900 -11.20255 -10.92176 -10.75238 -10.64162 -10.56873 -10.37648 -9.17063 -8.23704 -6.34545 0.68287 1.20859 1.43718 1.44880 1.56782 1.71495 2.39465 2.53211 2.80051 2.86550 2.95259 3.10925 3.20866 3.54482 3.62474 3.73330 3.86987 3.89609 3.98907 4.00967 4.07823 4.14117 4.33082 4.35405 4.39526 4.51056 4.53862 4.60447 4.64706 4.67322 4.76992 4.79534 4.81385 4.84338 4.87978 4.93068 4.94114 4.96807 5.01866 5.06825 5.09413 5.19554 5.25423 5.56486 5.73977 5.88937 5.96423 6.00203 6.30351 6.51737 6.78848 7.35134 7.72269 8.87941 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011901 B = 0.004019 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.153512 B = 6966.090984 C = 7880.960048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.398 6.398 3 C 0.084 3.916 4 C 0.074 3.926 5 N -0.435 5.435 6 C 0.228 3.772 7 C -0.513 4.513 8 H 0.072 0.928 9 C 0.010 3.990 10 N -0.934 5.934 11 Si 0.971 3.029 12 H -0.269 1.269 13 H -0.286 1.286 14 H -0.263 1.263 15 C 0.371 3.629 16 N -0.367 5.367 17 N -0.303 5.303 18 C 0.168 3.832 19 C 0.177 3.823 20 H 0.108 0.892 21 C -0.137 4.137 22 C -0.138 4.138 23 C 0.040 3.960 24 O -0.399 6.399 25 N -0.442 5.442 26 C 0.019 3.981 27 C -0.146 4.146 28 C -0.128 4.128 29 H 0.097 0.903 30 H 0.052 0.948 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.034 0.966 34 H 0.092 0.908 35 H 0.053 0.947 36 H 0.008 0.992 37 H -0.036 1.036 38 H 0.265 0.735 39 H 0.112 0.888 40 H 0.066 0.934 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.069 0.931 44 H 0.089 0.911 45 H 0.129 0.871 46 H 0.115 0.885 47 H 0.091 0.909 48 H 0.106 0.894 49 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.318 1.564 -13.947 21.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.317 6.317 3 C 0.007 3.993 4 C -0.054 4.054 5 N -0.159 5.159 6 C 0.103 3.897 7 C -0.551 4.551 8 H 0.090 0.910 9 C -0.188 4.188 10 N -0.574 5.574 11 Si 0.796 3.204 12 H -0.195 1.195 13 H -0.212 1.212 14 H -0.187 1.187 15 C 0.014 3.986 16 N -0.212 5.212 17 N -0.143 5.143 18 C -0.101 4.101 19 C 0.117 3.883 20 H 0.125 0.875 21 C -0.175 4.175 22 C -0.175 4.175 23 C -0.036 4.036 24 O -0.318 6.318 25 N -0.136 5.136 26 C -0.084 4.084 27 C -0.183 4.183 28 C -0.166 4.166 29 H 0.116 0.884 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.110 0.890 35 H 0.071 0.929 36 H 0.026 0.974 37 H -0.019 1.019 38 H 0.074 0.926 39 H 0.130 0.870 40 H 0.085 0.915 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.087 0.913 44 H 0.107 0.893 45 H 0.146 0.854 46 H 0.134 0.866 47 H 0.109 0.891 48 H 0.124 0.876 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -16.245 2.400 -13.363 21.171 hybrid contribution 1.256 -0.713 0.578 1.556 sum -14.988 1.687 -12.785 19.772 Atomic orbital electron populations 1.22871 0.80214 1.03547 1.00197 1.88000 1.20717 1.27580 1.95374 1.22358 0.92019 0.84738 1.00145 1.22058 0.94573 0.98146 0.90589 1.58904 1.23512 1.33029 1.00412 1.19419 0.79501 0.94346 0.96443 1.21225 0.93837 1.12070 1.27960 0.91036 1.25845 0.94908 1.00537 0.97552 1.70101 0.99295 1.42584 1.45436 0.85348 0.77395 0.78891 0.78806 1.19473 1.21179 1.18747 1.23049 1.00585 0.89634 0.85300 1.74531 1.25700 1.04843 1.16175 1.73765 1.19055 1.26290 0.95180 1.24977 1.05606 0.81473 0.98060 1.21159 0.93975 0.91407 0.81734 0.87471 1.23277 0.93280 1.02941 0.98026 1.23119 0.97389 1.00308 0.96729 1.23432 0.93875 0.96848 0.89462 1.88496 1.46682 1.42958 1.53686 1.45620 1.53999 1.08837 1.05094 1.22166 0.99461 0.79358 1.07464 1.23162 1.01234 0.96763 0.97166 1.23587 0.95075 1.01133 0.96772 0.88429 0.92924 0.94552 0.90771 0.94760 0.88967 0.92850 0.97390 1.01851 0.92581 0.86998 0.91480 0.87780 0.87718 0.91307 0.89287 0.85397 0.86649 0.89089 0.87571 0.83363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 113.37 1.25 1.93 16 2 O -0.40 -13.93 10.65 -148.98 -1.59 -15.52 16 3 C 0.08 2.98 6.02 71.98 0.43 3.42 16 4 C 0.07 3.12 4.92 86.30 0.42 3.55 16 5 N -0.43 -19.91 3.85 -710.37 -2.73 -22.64 16 6 C 0.23 12.30 4.68 85.55 0.40 12.70 16 7 C -0.51 -28.16 8.40 25.60 0.21 -27.95 16 8 H 0.07 3.88 7.61 -2.91 -0.02 3.86 16 9 C 0.01 0.57 5.46 84.65 0.46 1.03 16 10 N -0.93 -55.39 13.29 21.45 0.28 -55.10 16 11 Si 0.97 43.19 29.54 68.60 2.03 45.21 16 12 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 13 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 14 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 15 C 0.37 16.51 5.86 260.11 1.52 18.04 16 16 N -0.37 -17.02 10.50 -58.00 -0.61 -17.63 16 17 N -0.30 -13.19 12.18 -49.54 -0.60 -13.79 16 18 C 0.17 6.12 7.00 137.64 0.96 7.08 16 19 C 0.18 4.64 3.85 30.51 0.12 4.75 16 20 H 0.11 2.34 7.71 -2.39 -0.02 2.32 16 21 C -0.14 -2.48 6.56 32.05 0.21 -2.27 16 22 C -0.14 -1.68 7.02 31.86 0.22 -1.46 16 23 C 0.04 0.73 7.79 72.45 0.56 1.30 16 24 O -0.40 -11.77 11.03 -148.98 -1.64 -13.41 16 25 N -0.44 -16.76 3.10 -492.44 -1.52 -18.28 16 26 C 0.02 0.58 5.48 45.00 0.25 0.83 16 27 C -0.15 -4.22 9.88 30.60 0.30 -3.91 16 28 C -0.13 -2.52 10.45 30.60 0.32 -2.20 16 29 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.03 1.29 6.93 -2.39 -0.02 1.27 16 34 H 0.09 4.07 7.06 -2.39 -0.02 4.06 16 35 H 0.05 2.34 7.54 -2.38 -0.02 2.33 16 36 H 0.01 0.46 7.34 -2.39 -0.02 0.45 16 37 H -0.04 -2.22 8.05 -2.39 -0.02 -2.24 16 38 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 39 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.07 1.52 8.05 -2.39 -0.02 1.50 16 41 H 0.10 0.91 8.14 -2.39 -0.02 0.90 16 42 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 43 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.13 3.98 8.14 -2.39 -0.02 3.96 16 46 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 47 H 0.09 3.17 7.96 -2.39 -0.02 3.15 16 48 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 49 H 0.15 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -76.47 402.22 2.20 -74.27 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.93 Total: 20.06 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: 7.66 Total: 16.83 kcal Atomic # 7 Polarization: -122.27 SS G_CDS: -5.19 Total: -127.45 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -3.23 Total: -28.93 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -76.47 2.20 -74.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001396108498.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.560 kcal (2) G-P(sol) polarization free energy of solvation -76.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds