Wall clock time and date at job start Tue Mar 31 2020 19:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00381 * 2 1 4 4 C 1.52995 * 109.47282 * 180.02562 * 3 2 1 5 5 N 1.46906 * 109.47343 * 65.61364 * 4 3 2 6 6 C 1.46898 * 110.99799 * 286.59424 * 5 4 3 7 7 C 1.50701 * 109.46876 * 302.35593 * 6 5 4 8 8 H 1.08000 * 119.99975 * 4.37274 * 7 6 5 9 9 C 1.37878 * 119.99869 * 184.38198 * 7 6 5 10 10 N 1.31511 * 120.00083 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 120.00137 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46826 * 90.00109 * 11 9 7 13 13 H 1.48496 * 109.47026 * 210.00468 * 11 9 7 14 14 H 1.48502 * 109.46828 * 330.00598 * 11 9 7 15 15 C 1.38578 * 111.00113 * 162.63729 * 5 4 3 16 16 N 1.31218 * 126.47270 * 17.21762 * 15 5 4 17 17 N 1.28524 * 109.85872 * 179.97438 * 16 15 5 18 18 C 1.30297 * 110.05374 * 0.02562 * 17 16 15 19 19 C 1.50700 * 126.34647 * 180.02562 * 18 17 16 20 20 C 1.53008 * 117.50059 * 8.59686 * 19 18 17 21 21 C 1.52998 * 117.49992 * 299.97546 * 19 18 17 22 22 N 1.36450 * 126.47058 * 196.90884 * 15 5 4 23 23 C 1.46494 * 127.13902 * 0.04051 * 22 15 5 24 24 C 1.52992 * 109.47600 * 91.84068 * 23 22 15 25 25 O 1.42902 * 115.55195 * 39.41504 * 24 23 22 26 26 C 1.53009 * 117.49869 * 253.74834 * 24 23 22 27 27 C 1.53004 * 117.50234 * 185.08875 * 24 23 22 28 28 H 1.08997 * 109.47199 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46818 * 300.00247 * 1 2 3 30 30 H 1.08998 * 109.47125 * 59.99786 * 1 2 3 31 31 H 1.08995 * 109.46838 * 59.99457 * 3 2 1 32 32 H 1.09002 * 109.46828 * 300.00077 * 3 2 1 33 33 H 1.09003 * 109.47200 * 185.61404 * 4 3 2 34 34 H 1.09001 * 109.46983 * 305.61342 * 4 3 2 35 35 H 1.08999 * 109.47722 * 62.35276 * 6 5 4 36 36 H 1.09003 * 109.47122 * 182.35554 * 6 5 4 37 37 H 0.97000 * 120.00485 * 179.97438 * 10 9 7 38 38 H 1.09004 * 115.55310 * 154.30266 * 19 18 17 39 39 H 1.09001 * 117.49305 * 0.02562 * 20 19 18 40 40 H 1.08998 * 117.49823 * 145.01698 * 20 19 18 41 41 H 1.09003 * 117.50311 * 214.98157 * 21 19 18 42 42 H 1.08998 * 117.49814 * 359.97438 * 21 19 18 43 43 H 1.09003 * 109.47492 * 211.84428 * 23 22 15 44 44 H 1.09000 * 109.47266 * 331.83892 * 23 22 15 45 45 H 0.96695 * 113.99816 * 325.58804 * 25 24 23 46 46 H 1.08996 * 117.50051 * 359.97438 * 26 24 23 47 47 H 1.09005 * 117.49694 * 145.01658 * 26 24 23 48 48 H 1.09004 * 117.50185 * 214.97606 * 27 24 23 49 49 H 1.09000 * 117.49626 * 359.97438 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9780 0.5760 -1.2624 6 6 3.6698 -0.8600 -1.2908 7 6 4.3270 -1.5381 -0.1163 8 1 4.8554 -0.9507 0.6200 9 6 4.2537 -2.9083 0.0182 10 7 4.8267 -3.5000 1.0434 11 14 3.3392 -3.9242 -1.2551 12 1 4.2778 -4.3292 -2.3323 13 1 2.7746 -5.1361 -0.6089 14 1 2.2382 -3.1147 -1.8364 15 6 5.3294 0.7982 -1.4739 16 7 6.2094 1.1677 -0.5734 17 7 7.3690 1.2796 -1.1162 18 6 7.2981 0.9910 -2.3849 19 6 8.4395 1.0033 -3.3688 20 6 9.8516 1.1914 -2.8104 21 6 9.1757 2.3277 -3.5803 22 7 5.9974 0.6685 -2.6566 23 6 5.4366 0.2702 -3.9500 24 6 5.0089 1.5172 -4.7263 25 8 5.8872 2.6396 -4.6219 26 6 3.5094 1.8013 -4.8360 27 6 4.2866 1.3069 -6.0586 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6886 1.8463 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.9786 2.1754 0.0999 34 1 3.8507 0.5591 0.8346 35 1 2.5905 -1.0012 -1.2345 36 1 4.0452 -1.2939 -2.2176 37 1 4.7748 -4.4640 1.1382 38 1 8.3226 0.3489 -4.2327 39 1 9.9549 1.3058 -1.7314 40 1 10.6639 0.6605 -3.3068 41 1 9.5434 2.5447 -4.5832 42 1 8.8342 3.1903 -3.0081 43 1 6.1899 -0.2727 -4.5210 44 1 4.5708 -0.3719 -3.7884 45 1 6.3153 2.7250 -3.7592 46 1 2.8277 1.0996 -4.3555 47 1 3.1930 2.8444 -4.8290 48 1 4.4811 2.0248 -6.8554 49 1 4.1166 0.2800 -6.3823 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001401525524.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:41 Heat of formation + Delta-G solvation = 71.229706 kcal Electronic energy + Delta-G solvation = -31639.980566 eV Core-core repulsion = 27607.022767 eV Total energy + Delta-G solvation = -4032.957799 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.53903 -38.68391 -38.13723 -37.09017 -36.11623 -34.23051 -33.99246 -32.45077 -29.92886 -29.09452 -27.69771 -26.77062 -25.66070 -23.95034 -22.55768 -22.46531 -22.37899 -21.92795 -20.99818 -19.91182 -19.42804 -17.70494 -17.09398 -16.90976 -16.33836 -15.85852 -15.68644 -15.21776 -14.98571 -14.76204 -14.53391 -14.34083 -14.19573 -14.16710 -13.67767 -13.48729 -12.70146 -12.44337 -12.25363 -12.09147 -11.97550 -11.88884 -11.58511 -11.49724 -11.41126 -11.22435 -11.12789 -11.09829 -10.86963 -10.81266 -10.73468 -10.51623 -10.33951 -10.15924 -9.84751 -9.67208 -9.52705 -9.33950 -9.16595 -8.66379 -8.56522 -7.47519 -6.07300 -4.06307 2.17501 2.57287 3.20652 3.29559 3.31393 3.37127 3.50922 3.93075 4.00735 4.24978 4.32974 4.36714 4.45670 4.49387 4.63608 4.83065 4.92522 4.98082 5.09200 5.20217 5.23642 5.37586 5.45568 5.51149 5.54198 5.57626 5.65117 5.66171 5.70205 5.72838 5.80875 5.85181 5.90604 5.91378 5.96384 6.04403 6.07637 6.21881 6.30479 6.46919 6.69041 6.73355 7.02854 7.16948 7.31338 7.43139 7.63807 7.70782 7.97816 8.42606 8.99243 9.36249 9.52272 11.05801 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010085 B = 0.005098 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.832225 B = 5490.558490 C = 6286.374527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.071 3.929 4 C 0.071 3.929 5 N -0.455 5.455 6 C 0.156 3.844 7 C -0.541 4.541 8 H 0.085 0.915 9 C 0.078 3.922 10 N -0.893 5.893 11 Si 0.869 3.131 12 H -0.281 1.281 13 H -0.285 1.285 14 H -0.262 1.262 15 C 0.410 3.590 16 N -0.321 5.321 17 N -0.276 5.276 18 C 0.177 3.823 19 C -0.076 4.076 20 C -0.151 4.151 21 C -0.159 4.159 22 N -0.479 5.479 23 C 0.125 3.875 24 C 0.041 3.959 25 O -0.523 6.523 26 C -0.183 4.183 27 C -0.154 4.154 28 H 0.080 0.920 29 H 0.034 0.966 30 H 0.033 0.967 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.011 0.989 37 H 0.262 0.738 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.112 0.888 45 H 0.379 0.621 46 H 0.106 0.894 47 H 0.099 0.901 48 H 0.102 0.898 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.663 10.340 -13.028 16.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C -0.006 4.006 4 C -0.057 4.057 5 N -0.178 5.178 6 C 0.031 3.969 7 C -0.579 4.579 8 H 0.103 0.897 9 C -0.125 4.125 10 N -0.531 5.531 11 Si 0.696 3.304 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.186 1.186 15 C 0.054 3.946 16 N -0.164 5.164 17 N -0.115 5.115 18 C -0.090 4.090 19 C -0.097 4.097 20 C -0.189 4.189 21 C -0.197 4.197 22 N -0.175 5.175 23 C 0.001 3.999 24 C -0.001 4.001 25 O -0.329 6.329 26 C -0.221 4.221 27 C -0.192 4.192 28 H 0.098 0.902 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.029 0.971 37 H 0.072 0.928 38 H 0.135 0.865 39 H 0.128 0.872 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.130 0.870 45 H 0.229 0.771 46 H 0.125 0.875 47 H 0.117 0.883 48 H 0.121 0.879 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.445 10.695 -12.558 16.558 hybrid contribution -0.781 -1.564 -0.746 1.901 sum -2.226 9.131 -13.305 16.289 Atomic orbital electron populations 1.22681 0.82979 1.02222 0.98961 1.88258 1.17875 1.26832 1.94877 1.22504 0.93607 0.85215 0.99298 1.22045 0.92483 0.99690 0.91444 1.59361 1.05487 1.17914 1.35071 1.20646 0.99814 0.79848 0.96556 1.21538 1.34423 0.92911 1.09051 0.89674 1.24834 0.94766 0.97678 0.95188 1.69915 1.43953 1.09912 1.29342 0.86964 0.80830 0.80475 0.82116 1.20707 1.21091 1.18634 1.22639 0.91867 0.98398 0.81700 1.74718 0.94922 1.23894 1.22861 1.73837 1.16329 1.18153 1.03196 1.23456 0.84019 1.06579 0.94897 1.19922 0.89245 1.02652 0.97850 1.22999 0.92789 1.01240 1.01848 1.23036 1.02812 0.91991 1.01851 1.45857 1.08431 1.54069 1.09142 1.21846 1.01312 0.95561 0.81177 1.21710 0.89919 0.87758 1.00733 1.86377 1.61630 1.45771 1.39133 1.23629 0.94479 1.03193 1.00773 1.23252 1.01541 1.03038 0.91358 0.90178 0.94757 0.94850 0.93165 0.93501 0.90159 0.89499 0.90537 0.97116 0.92756 0.86539 0.87184 0.88234 0.88163 0.88327 0.88429 0.86998 0.77133 0.87540 0.88259 0.87917 0.87693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.51 16 2 O -0.36 -6.62 7.70 -35.23 -0.27 -6.89 16 3 C 0.07 1.14 6.25 37.16 0.23 1.37 16 4 C 0.07 1.35 4.85 -3.82 -0.02 1.34 16 5 N -0.45 -9.09 4.69 -175.88 -0.82 -9.92 16 6 C 0.16 3.56 3.60 -4.98 -0.02 3.54 16 7 C -0.54 -14.95 8.26 -34.44 -0.28 -15.24 16 8 H 0.09 2.66 6.58 -52.49 -0.35 2.32 16 9 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 10 N -0.89 -27.54 13.96 55.43 0.77 -26.77 16 11 Si 0.87 21.03 27.38 -169.99 -4.65 16.37 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.26 -5.95 6.67 56.52 0.38 -5.58 16 15 C 0.41 8.46 6.08 -318.88 -1.94 6.52 16 16 N -0.32 -7.26 11.30 30.31 0.34 -6.91 16 17 N -0.28 -5.74 11.79 32.99 0.39 -5.35 16 18 C 0.18 3.07 6.11 -154.02 -0.94 2.13 16 19 C -0.08 -0.99 5.76 -91.77 -0.53 -1.52 16 20 C -0.15 -1.76 10.15 -26.73 -0.27 -2.03 16 21 C -0.16 -1.70 10.20 -26.73 -0.27 -1.97 16 22 N -0.48 -8.42 2.29 -114.09 -0.26 -8.68 16 23 C 0.13 1.79 6.11 -4.05 -0.02 1.76 16 24 C 0.04 0.53 3.26 -90.62 -0.30 0.24 16 25 O -0.52 -7.34 13.85 -35.23 -0.49 -7.83 16 26 C -0.18 -2.18 10.13 -26.69 -0.27 -2.45 16 27 C -0.15 -1.59 10.20 -26.69 -0.27 -1.86 16 28 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.44 7.74 -51.93 -0.40 1.04 16 34 H 0.09 2.00 5.90 -51.93 -0.31 1.69 16 35 H 0.08 1.77 4.84 -51.93 -0.25 1.52 16 36 H 0.01 0.25 5.41 -51.93 -0.28 -0.03 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.12 1.34 7.58 -51.93 -0.39 0.95 16 39 H 0.11 1.48 7.92 -51.93 -0.41 1.07 16 40 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.10 1.20 7.51 -51.93 -0.39 0.81 16 44 H 0.11 1.68 6.00 -51.93 -0.31 1.37 16 45 H 0.38 5.52 6.43 45.56 0.29 5.81 16 46 H 0.11 1.29 8.08 -51.93 -0.42 0.87 16 47 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 48 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 49 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 393.14 15.07 5.92 5.92 Total: -1.00 -33.70 393.14 -9.99 -43.69 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -7.03 Total: 10.89 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -3.89 Total: -4.52 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: 0.42 Total: -57.63 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.76 Total: -14.73 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.65 Total: 16.37 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.70 -9.99 -43.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401525524.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.916 kcal (2) G-P(sol) polarization free energy of solvation -33.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds