Wall clock time and date at job start Tue Mar 31 2020 19:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00381 * 2 1 4 4 C 1.52995 * 109.47282 * 180.02562 * 3 2 1 5 5 N 1.46906 * 109.47343 * 65.61364 * 4 3 2 6 6 C 1.46898 * 110.99799 * 286.59424 * 5 4 3 7 7 C 1.50701 * 109.46876 * 302.35593 * 6 5 4 8 8 H 1.08000 * 119.99975 * 4.37274 * 7 6 5 9 9 C 1.37878 * 119.99869 * 184.38198 * 7 6 5 10 10 N 1.31511 * 120.00083 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 120.00137 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46826 * 90.00109 * 11 9 7 13 13 H 1.48496 * 109.47026 * 210.00468 * 11 9 7 14 14 H 1.48502 * 109.46828 * 330.00598 * 11 9 7 15 15 C 1.38578 * 111.00113 * 162.63729 * 5 4 3 16 16 N 1.31218 * 126.47270 * 17.21762 * 15 5 4 17 17 N 1.28524 * 109.85872 * 179.97438 * 16 15 5 18 18 C 1.30297 * 110.05374 * 0.02562 * 17 16 15 19 19 C 1.50700 * 126.34647 * 180.02562 * 18 17 16 20 20 C 1.53008 * 117.50059 * 8.59686 * 19 18 17 21 21 C 1.52998 * 117.49992 * 299.97546 * 19 18 17 22 22 N 1.36450 * 126.47058 * 196.90884 * 15 5 4 23 23 C 1.46494 * 127.13902 * 0.04051 * 22 15 5 24 24 C 1.52992 * 109.47600 * 91.84068 * 23 22 15 25 25 O 1.42902 * 115.55195 * 39.41504 * 24 23 22 26 26 C 1.53009 * 117.49869 * 253.74834 * 24 23 22 27 27 C 1.53004 * 117.50234 * 185.08875 * 24 23 22 28 28 H 1.08997 * 109.47199 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46818 * 300.00247 * 1 2 3 30 30 H 1.08998 * 109.47125 * 59.99786 * 1 2 3 31 31 H 1.08995 * 109.46838 * 59.99457 * 3 2 1 32 32 H 1.09002 * 109.46828 * 300.00077 * 3 2 1 33 33 H 1.09003 * 109.47200 * 185.61404 * 4 3 2 34 34 H 1.09001 * 109.46983 * 305.61342 * 4 3 2 35 35 H 1.08999 * 109.47722 * 62.35276 * 6 5 4 36 36 H 1.09003 * 109.47122 * 182.35554 * 6 5 4 37 37 H 0.97000 * 120.00485 * 179.97438 * 10 9 7 38 38 H 1.09004 * 115.55310 * 154.30266 * 19 18 17 39 39 H 1.09001 * 117.49305 * 0.02562 * 20 19 18 40 40 H 1.08998 * 117.49823 * 145.01698 * 20 19 18 41 41 H 1.09003 * 117.50311 * 214.98157 * 21 19 18 42 42 H 1.08998 * 117.49814 * 359.97438 * 21 19 18 43 43 H 1.09003 * 109.47492 * 211.84428 * 23 22 15 44 44 H 1.09000 * 109.47266 * 331.83892 * 23 22 15 45 45 H 0.96695 * 113.99816 * 325.58804 * 25 24 23 46 46 H 1.08996 * 117.50051 * 359.97438 * 26 24 23 47 47 H 1.09005 * 117.49694 * 145.01658 * 26 24 23 48 48 H 1.09004 * 117.50185 * 214.97606 * 27 24 23 49 49 H 1.09000 * 117.49626 * 359.97438 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9780 0.5760 -1.2624 6 6 3.6698 -0.8600 -1.2908 7 6 4.3270 -1.5381 -0.1163 8 1 4.8554 -0.9507 0.6200 9 6 4.2537 -2.9083 0.0182 10 7 4.8267 -3.5000 1.0434 11 14 3.3392 -3.9242 -1.2551 12 1 4.2778 -4.3292 -2.3323 13 1 2.7746 -5.1361 -0.6089 14 1 2.2382 -3.1147 -1.8364 15 6 5.3294 0.7982 -1.4739 16 7 6.2094 1.1677 -0.5734 17 7 7.3690 1.2796 -1.1162 18 6 7.2981 0.9910 -2.3849 19 6 8.4395 1.0033 -3.3688 20 6 9.8516 1.1914 -2.8104 21 6 9.1757 2.3277 -3.5803 22 7 5.9974 0.6685 -2.6566 23 6 5.4366 0.2702 -3.9500 24 6 5.0089 1.5172 -4.7263 25 8 5.8872 2.6396 -4.6219 26 6 3.5094 1.8013 -4.8360 27 6 4.2866 1.3069 -6.0586 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6886 1.8463 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.9786 2.1754 0.0999 34 1 3.8507 0.5591 0.8346 35 1 2.5905 -1.0012 -1.2345 36 1 4.0452 -1.2939 -2.2176 37 1 4.7748 -4.4640 1.1382 38 1 8.3226 0.3489 -4.2327 39 1 9.9549 1.3058 -1.7314 40 1 10.6639 0.6605 -3.3068 41 1 9.5434 2.5447 -4.5832 42 1 8.8342 3.1903 -3.0081 43 1 6.1899 -0.2727 -4.5210 44 1 4.5708 -0.3719 -3.7884 45 1 6.3153 2.7250 -3.7592 46 1 2.8277 1.0996 -4.3555 47 1 3.1930 2.8444 -4.8290 48 1 4.4811 2.0248 -6.8554 49 1 4.1166 0.2800 -6.3823 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001401525524.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:40 Heat of formation + Delta-G solvation = 48.036244 kcal Electronic energy + Delta-G solvation = -31640.986310 eV Core-core repulsion = 27607.022767 eV Total energy + Delta-G solvation = -4033.963543 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.00677 -39.69284 -39.59087 -38.17498 -37.51125 -35.46737 -35.08099 -34.58452 -31.34289 -30.85004 -29.01507 -28.26618 -26.96585 -25.29240 -24.14792 -23.50516 -23.39944 -23.17707 -22.14344 -21.30341 -20.76293 -19.28835 -18.72855 -18.19723 -17.68613 -17.26670 -16.97737 -16.51341 -16.35114 -16.13249 -15.89036 -15.60836 -15.31083 -15.27807 -15.21537 -14.65821 -14.38633 -13.84555 -13.64675 -13.53887 -13.27369 -13.10620 -12.89570 -12.73677 -12.65768 -12.48834 -12.45412 -12.34460 -12.30788 -12.23053 -11.93555 -11.84625 -11.74761 -11.66140 -11.50252 -11.20869 -10.92512 -10.79205 -10.39182 -10.34493 -10.23109 -9.12583 -8.27071 -6.30903 0.75970 1.24311 1.28947 1.34021 1.44928 1.85476 2.33236 2.57371 2.88547 2.98045 3.01859 3.05161 3.10621 3.25545 3.42012 3.56372 3.82911 3.94449 4.04188 4.05191 4.13675 4.14277 4.25772 4.34100 4.37664 4.48675 4.57413 4.60575 4.63461 4.66863 4.72184 4.74546 4.82274 4.90651 4.93755 4.95811 4.99799 5.04393 5.10761 5.18621 5.22080 5.29169 5.32545 5.44828 5.67281 5.84842 6.22709 6.33214 6.38450 6.48107 6.75027 7.31153 7.84347 8.90245 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010085 B = 0.005098 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.832225 B = 5490.558490 C = 6286.374527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.401 6.401 3 C 0.079 3.921 4 C 0.074 3.926 5 N -0.435 5.435 6 C 0.171 3.829 7 C -0.533 4.533 8 H 0.032 0.968 9 C 0.010 3.990 10 N -0.951 5.951 11 Si 0.941 3.059 12 H -0.270 1.270 13 H -0.287 1.287 14 H -0.232 1.232 15 C 0.388 3.612 16 N -0.363 5.363 17 N -0.321 5.321 18 C 0.198 3.802 19 C -0.096 4.096 20 C -0.151 4.151 21 C -0.133 4.133 22 N -0.475 5.475 23 C 0.119 3.881 24 C 0.023 3.977 25 O -0.528 6.528 26 C -0.190 4.190 27 C -0.125 4.125 28 H 0.080 0.920 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.037 0.963 35 H 0.085 0.915 36 H 0.020 0.980 37 H 0.262 0.738 38 H 0.141 0.859 39 H 0.083 0.917 40 H 0.129 0.871 41 H 0.133 0.867 42 H 0.086 0.914 43 H 0.121 0.879 44 H 0.106 0.894 45 H 0.373 0.627 46 H 0.104 0.896 47 H 0.097 0.903 48 H 0.113 0.887 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.823 10.649 -17.402 20.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.321 6.321 3 C 0.002 3.998 4 C -0.054 4.054 5 N -0.159 5.159 6 C 0.045 3.955 7 C -0.571 4.571 8 H 0.050 0.950 9 C -0.187 4.187 10 N -0.592 5.592 11 Si 0.764 3.236 12 H -0.195 1.195 13 H -0.213 1.213 14 H -0.155 1.155 15 C 0.031 3.969 16 N -0.206 5.206 17 N -0.159 5.159 18 C -0.069 4.069 19 C -0.117 4.117 20 C -0.189 4.189 21 C -0.171 4.171 22 N -0.170 5.170 23 C -0.003 4.003 24 C -0.019 4.019 25 O -0.333 6.333 26 C -0.227 4.227 27 C -0.162 4.162 28 H 0.099 0.901 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.056 0.944 35 H 0.102 0.898 36 H 0.038 0.962 37 H 0.071 0.929 38 H 0.159 0.841 39 H 0.102 0.898 40 H 0.147 0.853 41 H 0.151 0.849 42 H 0.105 0.895 43 H 0.139 0.861 44 H 0.125 0.875 45 H 0.221 0.779 46 H 0.122 0.878 47 H 0.115 0.885 48 H 0.131 0.869 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.617 11.043 -16.960 20.407 hybrid contribution -0.318 -1.553 0.670 1.721 sum -2.936 9.490 -16.290 19.080 Atomic orbital electron populations 1.22868 0.80535 1.02959 1.00850 1.88154 1.20635 1.28051 1.95243 1.22481 0.90856 0.85007 1.01453 1.22007 0.95234 0.98693 0.89455 1.59447 1.05326 1.16059 1.35033 1.20402 0.99507 0.81157 0.94424 1.21712 1.33312 0.92817 1.09306 0.95025 1.25849 0.95971 0.99203 0.97658 1.70112 1.46608 1.10219 1.32272 0.85816 0.80215 0.78474 0.79112 1.19503 1.21265 1.15501 1.22757 0.91981 0.99422 0.82729 1.74586 0.96097 1.25104 1.24828 1.73753 1.15984 1.20978 1.05233 1.24324 0.84948 1.03114 0.94553 1.20276 0.88210 1.05368 0.97824 1.23067 0.92719 1.02247 1.00856 1.23094 1.00543 0.90412 1.03054 1.46057 1.08163 1.53305 1.09495 1.22152 1.01752 0.96631 0.79807 1.21810 0.90255 0.86895 1.02951 1.86376 1.61947 1.46373 1.38628 1.23651 0.93703 1.03218 1.02178 1.23395 0.98141 1.04526 0.90187 0.90101 0.93208 0.92551 0.91028 0.91063 0.89643 0.94440 0.89803 0.96198 0.92871 0.84104 0.89822 0.85295 0.84879 0.89516 0.86072 0.87545 0.77851 0.87789 0.88465 0.86888 0.85427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 11.01 113.37 1.25 1.86 16 2 O -0.40 -14.42 7.70 -148.98 -1.15 -15.57 16 3 C 0.08 2.47 6.25 71.98 0.45 2.92 16 4 C 0.07 2.95 4.85 86.30 0.42 3.37 16 5 N -0.44 -17.69 4.69 -710.35 -3.33 -21.02 16 6 C 0.17 7.79 3.60 85.56 0.31 8.09 16 7 C -0.53 -30.72 8.26 25.60 0.21 -30.51 16 8 H 0.03 2.14 6.58 -2.91 -0.02 2.12 16 9 C 0.01 0.61 5.47 84.66 0.46 1.07 16 10 N -0.95 -61.45 13.96 21.45 0.30 -61.15 16 11 Si 0.94 43.28 27.38 68.60 1.88 45.15 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 13 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 14 H -0.23 -9.49 6.67 99.48 0.66 -8.83 16 15 C 0.39 16.52 6.08 260.11 1.58 18.11 16 16 N -0.36 -17.48 11.30 -58.01 -0.66 -18.14 16 17 N -0.32 -14.02 11.79 -49.54 -0.58 -14.60 16 18 C 0.20 6.92 6.11 137.64 0.84 7.76 16 19 C -0.10 -2.33 5.76 -11.54 -0.07 -2.40 16 20 C -0.15 -3.29 10.15 30.60 0.31 -2.98 16 21 C -0.13 -2.52 10.20 30.59 0.31 -2.21 16 22 N -0.47 -16.57 2.29 -514.88 -1.18 -17.74 16 23 C 0.12 3.13 6.11 86.38 0.53 3.66 16 24 C 0.02 0.53 3.26 -10.79 -0.04 0.50 16 25 O -0.53 -13.71 13.85 -148.98 -2.06 -15.77 16 26 C -0.19 -3.99 10.13 30.62 0.31 -3.68 16 27 C -0.13 -2.06 10.20 30.62 0.31 -1.75 16 28 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.09 3.24 7.74 -2.39 -0.02 3.23 16 34 H 0.04 1.87 5.90 -2.39 -0.01 1.86 16 35 H 0.08 3.78 4.84 -2.39 -0.01 3.77 16 36 H 0.02 0.88 5.41 -2.39 -0.01 0.87 16 37 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 38 H 0.14 2.74 7.58 -2.39 -0.02 2.73 16 39 H 0.08 2.30 7.92 -2.39 -0.02 2.28 16 40 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.12 2.57 7.51 -2.39 -0.02 2.55 16 44 H 0.11 2.93 6.00 -2.39 -0.01 2.92 16 45 H 0.37 10.48 6.43 -74.06 -0.48 10.00 16 46 H 0.10 2.24 8.08 -2.39 -0.02 2.22 16 47 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 48 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 49 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -79.90 393.14 0.86 -79.03 By element: Atomic # 1 Polarization: 35.56 SS G_CDS: 0.45 Total: 36.01 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 7.19 Total: 3.80 kcal Atomic # 7 Polarization: -127.21 SS G_CDS: -5.45 Total: -132.66 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -3.21 Total: -31.34 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.88 Total: 45.15 kcal Total: -79.90 0.86 -79.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401525524.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.068 kcal (2) G-P(sol) polarization free energy of solvation -79.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds