Wall clock time and date at job start Tue Mar 31 2020 19:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47404 * 2 1 4 4 C 1.53006 * 109.46874 * 239.99734 * 2 1 3 5 5 C 1.50707 * 109.46762 * 60.00588 * 4 2 1 6 6 H 1.08002 * 120.00004 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99631 * 180.02562 * 5 4 2 8 8 N 1.31518 * 120.00016 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00208 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47010 * 90.00602 * 9 7 5 11 11 H 1.48507 * 109.47165 * 210.00237 * 9 7 5 12 12 H 1.48498 * 109.47097 * 330.00462 * 9 7 5 13 13 C 1.52995 * 109.46946 * 120.00421 * 2 1 3 14 14 N 1.46496 * 109.47214 * 299.99746 * 13 2 1 15 15 C 1.34782 * 120.00394 * 180.02562 * 14 13 2 16 16 O 1.21580 * 119.99440 * 359.97438 * 15 14 13 17 17 N 1.34771 * 119.99912 * 179.97438 * 15 14 13 18 18 C 1.46502 * 119.99851 * 179.97438 * 17 15 14 19 19 H 1.09001 * 107.88055 * 38.40775 * 18 17 15 20 20 C 1.50954 * 107.94554 * 281.78890 * 18 17 15 21 21 C 1.53684 * 110.77871 * 166.08439 * 20 18 17 22 22 C 1.51814 * 106.94826 * 79.04351 * 21 20 18 23 23 N 1.30310 * 127.90248 * 114.40696 * 22 21 20 24 24 N 1.29270 * 107.46124 * 179.97438 * 23 22 21 25 25 N 1.29152 * 109.43190 * 0.02562 * 24 23 22 26 26 N 1.28397 * 108.35790 * 359.97438 * 25 24 23 27 27 C 1.47653 * 127.75757 * 180.02562 * 26 25 24 28 28 C 1.50880 * 108.05435 * 154.99895 * 18 17 15 29 29 H 1.09005 * 109.47158 * 300.00077 * 1 2 3 30 30 H 1.09000 * 109.47261 * 59.99710 * 1 2 3 31 31 H 1.09000 * 109.47631 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47056 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47148 * 300.00359 * 3 2 1 34 34 H 1.09005 * 109.47026 * 59.99842 * 3 2 1 35 35 H 1.08996 * 109.46745 * 179.97438 * 4 2 1 36 36 H 1.08996 * 109.47178 * 300.00434 * 4 2 1 37 37 H 0.96995 * 120.00297 * 179.97438 * 8 7 5 38 38 H 1.08995 * 109.47352 * 179.97438 * 13 2 1 39 39 H 1.09005 * 109.47607 * 59.99378 * 13 2 1 40 40 H 0.97000 * 119.99841 * 0.02562 * 14 13 2 41 41 H 0.97001 * 120.00867 * 359.97438 * 17 15 14 42 42 H 1.08996 * 109.21244 * 45.77540 * 20 18 17 43 43 H 1.09002 * 109.22653 * 286.40838 * 20 18 17 44 44 H 1.08999 * 109.96351 * 319.68274 * 21 20 18 45 45 H 1.08999 * 109.95774 * 198.39790 * 21 20 18 46 46 H 1.08998 * 109.91803 * 126.29580 * 27 26 25 47 47 H 1.08997 * 109.92132 * 5.11679 * 27 26 25 48 48 H 1.09002 * 109.12841 * 73.84194 * 28 18 17 49 49 H 1.09001 * 109.12919 * 314.68371 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0108 -2.4798 6 1 0.9165 0.8671 -2.3806 7 6 1.8703 -0.4822 -3.7320 8 7 1.4315 0.1375 -4.8058 9 14 2.9440 -2.0011 -3.9034 10 1 2.0853 -3.2118 -3.9483 11 1 3.7356 -1.9089 -5.1565 12 1 3.8647 -2.0900 -2.7417 13 6 2.0400 -0.7213 1.2492 14 7 1.5517 -0.0308 2.4453 15 6 1.8776 -0.4910 3.6695 16 8 2.5766 -1.4796 3.7809 17 7 1.4288 0.1446 4.7699 18 6 1.7827 -0.3559 6.1005 19 1 2.8158 -0.7015 6.0642 20 6 0.9005 -1.5436 6.4004 21 6 1.4349 -2.3283 7.6089 22 6 1.0089 -1.5694 8.8528 23 7 0.1807 -1.9556 9.7818 24 7 0.1062 -1.0050 10.6547 25 7 0.8704 -0.0287 10.2930 26 7 1.4390 -0.3485 9.1870 27 6 2.3959 0.4524 8.3978 28 6 1.7096 0.7986 7.0691 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1299 -0.7209 -1.2495 36 1 1.6766 -1.7489 -1.2493 37 1 1.6658 -0.1939 -5.6868 38 1 3.1299 -0.7218 1.2490 39 1 1.6766 -1.7490 1.2492 40 1 0.9938 0.7577 2.3564 41 1 0.8715 0.9336 4.6810 42 1 0.8742 -2.1996 5.5303 43 1 -0.1092 -1.1951 6.6172 44 1 2.5224 -2.3871 7.5632 45 1 1.0073 -3.3309 7.6201 46 1 3.2990 -0.1281 8.2091 47 1 2.6467 1.3669 8.9351 48 1 0.6637 1.0393 7.2597 49 1 2.2010 1.6661 6.6286 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001427664744.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:44 Heat of formation + Delta-G solvation = 76.054605 kcal Electronic energy + Delta-G solvation = -29256.964837 eV Core-core repulsion = 25256.509013 eV Total energy + Delta-G solvation = -4000.455824 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.70688 -40.49739 -38.53552 -37.23741 -35.56745 -34.35674 -33.71640 -32.27668 -31.95682 -31.27937 -27.93252 -27.12925 -26.62931 -25.76359 -25.55827 -23.99237 -22.62983 -21.70327 -21.37372 -20.81160 -19.02671 -18.23061 -17.83127 -17.22891 -17.00981 -16.64442 -15.84654 -15.69456 -15.14613 -14.92238 -14.56171 -14.23955 -14.13963 -14.00368 -13.82345 -13.59250 -13.47399 -13.09474 -12.78859 -12.59583 -12.47280 -12.39664 -12.31451 -12.26656 -11.87342 -11.54671 -11.36166 -11.30058 -11.28691 -11.18642 -11.06233 -10.67250 -10.55038 -10.44570 -10.22941 -10.03273 -9.79545 -9.58296 -9.49341 -9.04789 -8.79408 -8.57732 -6.08411 -4.06041 0.89659 1.51977 1.88452 2.47407 3.14827 3.28191 3.36504 3.39802 3.43705 3.63219 3.77531 3.91732 4.16837 4.23152 4.37048 4.41667 4.48567 4.57435 4.70814 4.78555 4.93554 5.09674 5.19739 5.23936 5.28887 5.31673 5.35083 5.47033 5.48633 5.56482 5.63836 5.79356 6.03764 6.04329 6.07663 6.16580 6.24937 6.41760 6.52828 6.62328 6.76614 6.87267 6.95282 6.99259 7.14587 7.31107 7.73280 7.94373 8.24899 8.47627 8.54358 8.95247 9.54090 11.04217 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.032031 B = 0.001943 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.944639 B =14405.281646 C =14688.777939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.063 4.063 3 C -0.128 4.128 4 C -0.002 4.002 5 C -0.512 4.512 6 H 0.078 0.922 7 C 0.066 3.934 8 N -0.903 5.903 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.145 3.855 14 N -0.735 5.735 15 C 0.701 3.299 16 O -0.592 6.592 17 N -0.752 5.752 18 C 0.160 3.840 19 H 0.089 0.911 20 C -0.131 4.131 21 C -0.033 4.033 22 C 0.185 3.815 23 N -0.301 5.301 24 N -0.083 5.083 25 N -0.095 5.095 26 N -0.306 5.306 27 C 0.121 3.879 28 C -0.147 4.147 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.030 0.970 35 H 0.018 0.982 36 H 0.014 0.986 37 H 0.263 0.737 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.395 0.605 41 H 0.395 0.605 42 H 0.099 0.901 43 H 0.069 0.931 44 H 0.101 0.899 45 H 0.114 0.886 46 H 0.116 0.884 47 H 0.124 0.876 48 H 0.083 0.917 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.868 2.469 25.198 25.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.063 4.063 3 C -0.185 4.185 4 C -0.040 4.040 5 C -0.550 4.550 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.542 5.542 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.021 3.979 14 N -0.390 5.390 15 C 0.401 3.599 16 O -0.470 6.470 17 N -0.408 5.408 18 C 0.054 3.946 19 H 0.107 0.893 20 C -0.171 4.171 21 C -0.074 4.074 22 C -0.093 4.093 23 N -0.150 5.150 24 N -0.077 5.077 25 N -0.081 5.081 26 N -0.109 5.109 27 C 0.000 4.000 28 C -0.186 4.186 29 H 0.049 0.951 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.049 0.951 35 H 0.037 0.963 36 H 0.032 0.968 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.230 0.770 41 H 0.229 0.771 42 H 0.118 0.882 43 H 0.088 0.912 44 H 0.119 0.881 45 H 0.132 0.868 46 H 0.134 0.866 47 H 0.142 0.858 48 H 0.101 0.899 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.815 1.725 26.294 26.413 hybrid contribution 0.526 0.030 -1.151 1.266 sum 2.342 1.755 25.143 25.312 Atomic orbital electron populations 1.21773 0.94817 1.01272 1.00694 1.20700 0.95802 0.95912 0.93922 1.21763 1.00438 0.95607 1.00687 1.19590 0.96305 0.95511 0.92557 1.21068 1.31909 1.13374 0.88616 0.90426 1.25009 0.95715 0.96779 0.96000 1.69898 1.45855 1.40565 0.97898 0.86852 0.81314 0.83892 0.77667 1.20358 1.21508 1.18978 1.21514 0.98654 0.95662 0.82067 1.45355 1.55924 1.33205 1.04491 1.15983 0.80364 0.82992 0.80550 1.90918 1.42782 1.27334 1.85942 1.45293 1.57644 1.33429 1.04452 1.20127 1.00831 0.92480 0.81116 0.89277 1.21823 0.99616 0.97344 0.98325 1.20687 1.02584 0.98918 0.85253 1.26151 0.96467 0.86508 1.00203 1.74999 1.16858 1.21986 1.01132 1.78889 1.14533 0.94889 1.19386 1.78860 1.08267 1.22327 0.98600 1.48644 1.31693 1.14129 1.16463 1.22691 0.89941 0.97160 0.90256 1.21970 1.03244 0.99812 0.93556 0.95120 0.90904 0.93381 0.93398 0.90900 0.95130 0.96335 0.96773 0.92768 0.91956 0.91955 0.76961 0.77108 0.88215 0.91218 0.88060 0.86756 0.86591 0.85760 0.89885 0.87244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 8.05 37.16 0.30 -1.76 16 2 C -0.06 -1.06 0.54 -154.51 -0.08 -1.15 16 3 C -0.13 -2.03 8.05 37.15 0.30 -1.74 16 4 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 5 C -0.51 -13.25 8.20 -34.44 -0.28 -13.53 16 6 H 0.08 2.13 5.92 -52.49 -0.31 1.82 16 7 C 0.07 1.83 5.47 -17.82 -0.10 1.73 16 8 N -0.90 -26.65 13.96 55.43 0.77 -25.87 16 9 Si 0.88 20.97 27.47 -169.99 -4.67 16.30 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 13 C 0.14 2.19 4.56 -4.05 -0.02 2.17 16 14 N -0.73 -8.64 4.96 -65.23 -0.32 -8.96 16 15 C 0.70 8.16 8.17 -86.92 -0.71 7.45 16 16 O -0.59 -9.12 15.46 5.30 0.08 -9.04 16 17 N -0.75 -5.27 5.00 -60.75 -0.30 -5.58 16 18 C 0.16 0.87 1.90 -70.02 -0.13 0.74 16 19 H 0.09 0.56 7.14 -51.93 -0.37 0.19 16 20 C -0.13 -0.84 5.10 -27.40 -0.14 -0.98 16 21 C -0.03 -0.19 6.00 -26.98 -0.16 -0.35 16 22 C 0.19 1.55 7.10 -156.72 -1.11 0.43 16 23 N -0.30 -3.55 12.37 32.63 0.40 -3.15 16 24 N -0.08 -1.06 13.45 60.32 0.81 -0.25 16 25 N -0.09 -1.00 13.36 60.35 0.81 -0.19 16 26 N -0.31 -2.23 3.36 -57.31 -0.19 -2.42 16 27 C 0.12 0.34 6.73 -3.15 -0.02 0.32 16 28 C -0.15 -0.42 5.04 -27.54 -0.14 -0.56 16 29 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 30 H 0.07 1.34 6.62 -51.93 -0.34 1.00 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 1.34 6.62 -51.93 -0.34 0.99 16 34 H 0.03 0.38 6.86 -51.93 -0.36 0.03 16 35 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 36 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.40 3.83 6.18 -40.82 -0.25 3.58 16 41 H 0.40 1.86 8.55 -40.82 -0.35 1.51 16 42 H 0.10 0.85 7.24 -51.93 -0.38 0.48 16 43 H 0.07 0.48 7.92 -51.93 -0.41 0.07 16 44 H 0.10 0.41 7.89 -51.93 -0.41 0.00 16 45 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.12 0.11 7.87 -51.93 -0.41 -0.30 16 47 H 0.12 0.14 8.14 -51.93 -0.42 -0.28 16 48 H 0.08 0.31 8.08 -51.93 -0.42 -0.11 16 49 H 0.11 0.14 8.13 -51.93 -0.42 -0.28 16 LS Contribution 381.98 15.07 5.76 5.76 Total: -1.00 -34.67 381.98 -6.84 -41.51 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -7.60 Total: -0.75 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -2.39 Total: -7.36 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 1.98 Total: -46.42 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.08 Total: -9.04 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.67 Total: 16.30 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.67 -6.84 -41.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001427664744.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.565 kcal (2) G-P(sol) polarization free energy of solvation -34.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds