Wall clock time and date at job start Tue Mar 31 2020 19:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47404 * 2 1 4 4 C 1.53006 * 109.46874 * 239.99734 * 2 1 3 5 5 C 1.50707 * 109.46762 * 60.00588 * 4 2 1 6 6 H 1.08002 * 120.00004 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99631 * 180.02562 * 5 4 2 8 8 N 1.31518 * 120.00016 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00208 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47010 * 90.00602 * 9 7 5 11 11 H 1.48507 * 109.47165 * 210.00237 * 9 7 5 12 12 H 1.48498 * 109.47097 * 330.00462 * 9 7 5 13 13 C 1.52995 * 109.46946 * 120.00421 * 2 1 3 14 14 N 1.46496 * 109.47214 * 299.99746 * 13 2 1 15 15 C 1.34782 * 120.00394 * 180.02562 * 14 13 2 16 16 O 1.21580 * 119.99440 * 359.97438 * 15 14 13 17 17 N 1.34771 * 119.99912 * 179.97438 * 15 14 13 18 18 C 1.46502 * 119.99851 * 179.97438 * 17 15 14 19 19 H 1.09001 * 107.88055 * 38.40775 * 18 17 15 20 20 C 1.50954 * 107.94554 * 281.78890 * 18 17 15 21 21 C 1.53684 * 110.77871 * 166.08439 * 20 18 17 22 22 C 1.51814 * 106.94826 * 79.04351 * 21 20 18 23 23 N 1.30310 * 127.90248 * 114.40696 * 22 21 20 24 24 N 1.29270 * 107.46124 * 179.97438 * 23 22 21 25 25 N 1.29152 * 109.43190 * 0.02562 * 24 23 22 26 26 N 1.28397 * 108.35790 * 359.97438 * 25 24 23 27 27 C 1.47653 * 127.75757 * 180.02562 * 26 25 24 28 28 C 1.50880 * 108.05435 * 154.99895 * 18 17 15 29 29 H 1.09005 * 109.47158 * 300.00077 * 1 2 3 30 30 H 1.09000 * 109.47261 * 59.99710 * 1 2 3 31 31 H 1.09000 * 109.47631 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47056 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47148 * 300.00359 * 3 2 1 34 34 H 1.09005 * 109.47026 * 59.99842 * 3 2 1 35 35 H 1.08996 * 109.46745 * 179.97438 * 4 2 1 36 36 H 1.08996 * 109.47178 * 300.00434 * 4 2 1 37 37 H 0.96995 * 120.00297 * 179.97438 * 8 7 5 38 38 H 1.08995 * 109.47352 * 179.97438 * 13 2 1 39 39 H 1.09005 * 109.47607 * 59.99378 * 13 2 1 40 40 H 0.97000 * 119.99841 * 0.02562 * 14 13 2 41 41 H 0.97001 * 120.00867 * 359.97438 * 17 15 14 42 42 H 1.08996 * 109.21244 * 45.77540 * 20 18 17 43 43 H 1.09002 * 109.22653 * 286.40838 * 20 18 17 44 44 H 1.08999 * 109.96351 * 319.68274 * 21 20 18 45 45 H 1.08999 * 109.95774 * 198.39790 * 21 20 18 46 46 H 1.08998 * 109.91803 * 126.29580 * 27 26 25 47 47 H 1.08997 * 109.92132 * 5.11679 * 27 26 25 48 48 H 1.09002 * 109.12841 * 73.84194 * 28 18 17 49 49 H 1.09001 * 109.12919 * 314.68371 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0108 -2.4798 6 1 0.9165 0.8671 -2.3806 7 6 1.8703 -0.4822 -3.7320 8 7 1.4315 0.1375 -4.8058 9 14 2.9440 -2.0011 -3.9034 10 1 2.0853 -3.2118 -3.9483 11 1 3.7356 -1.9089 -5.1565 12 1 3.8647 -2.0900 -2.7417 13 6 2.0400 -0.7213 1.2492 14 7 1.5517 -0.0308 2.4453 15 6 1.8776 -0.4910 3.6695 16 8 2.5766 -1.4796 3.7809 17 7 1.4288 0.1446 4.7699 18 6 1.7827 -0.3559 6.1005 19 1 2.8158 -0.7015 6.0642 20 6 0.9005 -1.5436 6.4004 21 6 1.4349 -2.3283 7.6089 22 6 1.0089 -1.5694 8.8528 23 7 0.1807 -1.9556 9.7818 24 7 0.1062 -1.0050 10.6547 25 7 0.8704 -0.0287 10.2930 26 7 1.4390 -0.3485 9.1870 27 6 2.3959 0.4524 8.3978 28 6 1.7096 0.7986 7.0691 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1299 -0.7209 -1.2495 36 1 1.6766 -1.7489 -1.2493 37 1 1.6658 -0.1939 -5.6868 38 1 3.1299 -0.7218 1.2490 39 1 1.6766 -1.7490 1.2492 40 1 0.9938 0.7577 2.3564 41 1 0.8715 0.9336 4.6810 42 1 0.8742 -2.1996 5.5303 43 1 -0.1092 -1.1951 6.6172 44 1 2.5224 -2.3871 7.5632 45 1 1.0073 -3.3309 7.6201 46 1 3.2990 -0.1281 8.2091 47 1 2.6467 1.3669 8.9351 48 1 0.6637 1.0393 7.2597 49 1 2.2010 1.6661 6.6286 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001427664744.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:43 Heat of formation + Delta-G solvation = 50.464547 kcal Electronic energy + Delta-G solvation = -29258.074506 eV Core-core repulsion = 25256.509013 eV Total energy + Delta-G solvation = -4001.565492 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -45.38678 -41.31782 -39.37130 -38.34057 -36.22231 -35.17360 -34.97637 -33.94087 -32.48887 -32.03461 -29.68610 -27.96430 -27.95249 -26.72245 -26.09410 -24.69511 -24.28764 -22.25335 -22.04358 -21.59236 -20.09894 -19.05387 -18.86423 -18.71256 -17.86280 -17.49687 -16.54548 -16.44335 -16.33581 -15.83771 -15.59015 -15.45003 -15.09808 -15.01209 -14.77234 -14.52253 -14.16564 -14.13746 -14.04014 -13.93000 -13.62166 -13.10392 -12.91886 -12.90167 -12.82540 -12.80745 -12.58572 -12.38003 -12.27445 -12.16409 -12.12507 -11.89247 -11.80803 -11.75064 -11.47837 -11.34638 -11.14302 -10.98333 -10.87457 -10.68953 -10.29532 -9.71009 -8.20881 -6.20892 0.25005 1.07247 1.12994 1.37531 1.40329 1.50036 1.72647 2.25857 2.40516 2.88809 3.14744 3.22413 3.28468 3.41885 3.74584 3.82102 3.97758 4.03734 4.10730 4.11627 4.17016 4.20308 4.20396 4.37955 4.46707 4.66830 4.69822 4.77394 4.79424 4.83444 4.83639 4.88052 4.99416 5.02932 5.06647 5.11708 5.12965 5.29916 5.33832 5.40664 5.44232 5.54913 5.56575 5.62995 5.73392 5.79285 6.07561 6.39865 6.86363 7.17316 7.41921 7.52233 7.67773 8.94588 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.032031 B = 0.001943 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.944639 B =14405.281646 C =14688.777939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.058 4.058 3 C -0.122 4.122 4 C -0.004 4.004 5 C -0.500 4.500 6 H 0.052 0.948 7 C 0.003 3.997 8 N -0.952 5.952 9 Si 0.934 3.066 10 H -0.273 1.273 11 H -0.290 1.290 12 H -0.249 1.249 13 C 0.160 3.840 14 N -0.729 5.729 15 C 0.701 3.299 16 O -0.629 6.629 17 N -0.733 5.733 18 C 0.160 3.840 19 H 0.089 0.911 20 C -0.124 4.124 21 C -0.027 4.027 22 C 0.190 3.810 23 N -0.335 5.335 24 N -0.122 5.122 25 N -0.102 5.102 26 N -0.294 5.294 27 C 0.111 3.889 28 C -0.135 4.135 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.043 0.957 32 H 0.044 0.956 33 H 0.041 0.959 34 H 0.070 0.930 35 H 0.016 0.984 36 H 0.013 0.987 37 H 0.262 0.738 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.408 0.592 41 H 0.410 0.590 42 H 0.079 0.921 43 H 0.063 0.937 44 H 0.124 0.876 45 H 0.115 0.885 46 H 0.141 0.859 47 H 0.147 0.853 48 H 0.077 0.923 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.130 2.975 27.156 27.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.058 4.058 3 C -0.180 4.180 4 C -0.042 4.042 5 C -0.539 4.539 6 H 0.070 0.930 7 C -0.193 4.193 8 N -0.594 5.594 9 Si 0.760 3.240 10 H -0.198 1.198 11 H -0.217 1.217 12 H -0.173 1.173 13 C 0.035 3.965 14 N -0.385 5.385 15 C 0.401 3.599 16 O -0.510 6.510 17 N -0.389 5.389 18 C 0.055 3.945 19 H 0.107 0.893 20 C -0.164 4.164 21 C -0.068 4.068 22 C -0.088 4.088 23 N -0.185 5.185 24 N -0.115 5.115 25 N -0.089 5.089 26 N -0.098 5.098 27 C -0.008 4.008 28 C -0.174 4.174 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.034 0.966 36 H 0.031 0.969 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.245 0.755 41 H 0.247 0.753 42 H 0.097 0.903 43 H 0.081 0.919 44 H 0.142 0.858 45 H 0.133 0.867 46 H 0.159 0.841 47 H 0.165 0.835 48 H 0.096 0.904 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.059 2.279 28.295 28.551 hybrid contribution 0.117 -0.047 -1.753 1.758 sum 3.176 2.233 26.542 26.825 Atomic orbital electron populations 1.21700 0.94122 1.01123 1.01123 1.20548 0.96288 0.96167 0.92800 1.21687 1.00253 0.94865 1.01161 1.19575 0.96022 0.95472 0.93153 1.21387 1.30116 1.12228 0.90133 0.93033 1.25861 0.97547 0.99965 0.95964 1.70044 1.48186 1.42711 0.98418 0.85892 0.79878 0.80329 0.77942 1.19839 1.21665 1.17270 1.21061 0.97973 0.95031 0.82390 1.45062 1.56183 1.33447 1.03777 1.16084 0.80062 0.82668 0.81110 1.90901 1.44536 1.29107 1.86497 1.45144 1.56762 1.33216 1.03805 1.20286 1.00401 0.93113 0.80734 0.89319 1.21708 0.99641 0.97496 0.97600 1.20789 1.03916 0.98474 0.83613 1.26453 0.95513 0.86864 1.00008 1.74903 1.18554 1.22775 1.02222 1.78857 1.16199 0.95752 1.20691 1.78752 1.08274 1.22065 0.99770 1.48986 1.31227 1.13982 1.15584 1.23222 0.89696 0.98172 0.89713 1.21900 1.03359 0.99338 0.92816 0.91218 0.93915 0.93824 0.93636 0.93943 0.91111 0.96584 0.96903 0.92941 0.92829 0.93048 0.75506 0.75339 0.90260 0.91870 0.85757 0.86662 0.84090 0.83493 0.90437 0.84611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.80 8.05 71.98 0.58 -3.22 16 2 C -0.06 -1.87 0.54 -52.18 -0.03 -1.89 16 3 C -0.12 -3.69 8.05 71.98 0.58 -3.11 16 4 C 0.00 -0.18 3.11 29.85 0.09 -0.09 16 5 C -0.50 -26.37 8.20 25.60 0.21 -26.16 16 6 H 0.05 2.93 5.92 -2.91 -0.02 2.92 16 7 C 0.00 0.15 5.47 84.65 0.46 0.61 16 8 N -0.95 -57.80 13.96 21.45 0.30 -57.50 16 9 Si 0.93 43.39 27.47 68.60 1.88 45.27 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 12 H -0.25 -10.80 6.54 99.48 0.65 -10.14 16 13 C 0.16 4.52 4.56 86.38 0.39 4.91 16 14 N -0.73 -14.83 4.96 -478.56 -2.37 -17.20 16 15 C 0.70 14.24 8.17 179.05 1.46 15.71 16 16 O -0.63 -18.04 15.46 -3.97 -0.06 -18.10 16 17 N -0.73 -7.67 5.00 -464.37 -2.32 -9.99 16 18 C 0.16 1.20 1.90 43.64 0.08 1.29 16 19 H 0.09 0.78 7.14 -2.39 -0.02 0.76 16 20 C -0.12 -1.34 5.10 30.16 0.15 -1.18 16 21 C -0.03 -0.25 6.00 30.43 0.18 -0.07 16 22 C 0.19 2.89 7.10 139.13 0.99 3.88 16 23 N -0.34 -7.83 12.37 -50.67 -0.63 -8.46 16 24 N -0.12 -3.09 13.45 36.91 0.50 -2.60 16 25 N -0.10 -2.03 13.36 37.02 0.49 -1.53 16 26 N -0.29 -3.62 3.36 -335.22 -1.13 -4.75 16 27 C 0.11 0.19 6.73 86.33 0.58 0.77 16 28 C -0.14 -0.22 5.04 30.07 0.15 -0.07 16 29 H 0.07 1.57 6.86 -2.38 -0.02 1.55 16 30 H 0.04 1.57 6.62 -2.39 -0.02 1.56 16 31 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.04 1.54 6.62 -2.39 -0.02 1.52 16 34 H 0.07 1.54 6.86 -2.38 -0.02 1.52 16 35 H 0.02 0.69 7.20 -2.39 -0.02 0.68 16 36 H 0.01 0.55 7.57 -2.39 -0.02 0.53 16 37 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 38 H 0.05 1.62 8.14 -2.39 -0.02 1.61 16 39 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 40 H 0.41 6.19 6.18 -92.71 -0.57 5.62 16 41 H 0.41 2.09 8.55 -92.71 -0.79 1.30 16 42 H 0.08 1.25 7.24 -2.39 -0.02 1.23 16 43 H 0.06 0.76 7.92 -2.39 -0.02 0.74 16 44 H 0.12 0.62 7.89 -2.39 -0.02 0.60 16 45 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.14 -0.38 7.87 -2.39 -0.02 -0.40 16 47 H 0.15 -0.31 8.14 -2.39 -0.02 -0.33 16 48 H 0.08 0.30 8.08 -2.39 -0.02 0.28 16 49 H 0.14 -0.37 8.13 -2.39 -0.02 -0.39 16 Total: -1.00 -79.25 381.98 2.12 -77.13 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -0.43 Total: 6.36 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: 5.89 Total: -8.63 kcal Atomic # 7 Polarization: -96.86 SS G_CDS: -5.16 Total: -102.02 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.06 Total: -18.10 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.88 Total: 45.27 kcal Total: -79.25 2.12 -77.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001427664744.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.592 kcal (2) G-P(sol) polarization free energy of solvation -79.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds