Wall clock time and date at job start Tue Mar 31 2020 19:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47221 * 2 1 4 4 C 1.53002 * 109.47000 * 240.00684 * 2 1 3 5 5 C 1.50697 * 109.47341 * 59.99816 * 4 2 1 6 6 H 1.07997 * 120.00269 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99853 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00405 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99812 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47145 * 60.00201 * 9 7 5 11 11 H 1.48503 * 109.47075 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47435 * 300.00224 * 9 7 5 13 13 C 1.52998 * 109.47588 * 120.00371 * 2 1 3 14 14 N 1.46502 * 109.46781 * 300.00346 * 13 2 1 15 15 C 1.34779 * 119.99603 * 179.97438 * 14 13 2 16 16 O 1.21578 * 120.00469 * 359.97438 * 15 14 13 17 17 N 1.34778 * 119.99531 * 179.97438 * 15 14 13 18 18 C 1.46508 * 119.99829 * 179.97438 * 17 15 14 19 19 H 1.08995 * 107.90737 * 38.38481 * 18 17 15 20 20 C 1.51011 * 108.05415 * 154.99841 * 18 17 15 21 21 C 1.53677 * 110.86702 * 193.86034 * 20 18 17 22 22 C 1.51810 * 106.95005 * 280.99208 * 21 20 18 23 23 N 1.30308 * 127.91144 * 245.58718 * 22 21 20 24 24 N 1.29270 * 107.46767 * 180.02562 * 23 22 21 25 25 N 1.29147 * 109.42937 * 359.97438 * 24 23 22 26 26 N 1.28394 * 108.35636 * 359.97438 * 25 24 23 27 27 C 1.47658 * 127.75301 * 179.73937 * 26 25 24 28 28 C 1.50879 * 108.05152 * 281.81163 * 18 17 15 29 29 H 1.09000 * 109.47410 * 299.99897 * 1 2 3 30 30 H 1.09005 * 109.47377 * 59.99582 * 1 2 3 31 31 H 1.09002 * 109.47215 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47474 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47377 * 300.00209 * 3 2 1 34 34 H 1.09007 * 109.47102 * 60.00361 * 3 2 1 35 35 H 1.09006 * 109.47103 * 179.97438 * 4 2 1 36 36 H 1.09002 * 109.46725 * 299.99796 * 4 2 1 37 37 H 0.96994 * 119.99843 * 179.97438 * 8 7 5 38 38 H 1.08992 * 109.47568 * 180.02562 * 13 2 1 39 39 H 1.09002 * 109.46999 * 59.99676 * 13 2 1 40 40 H 0.97002 * 120.00344 * 359.97438 * 14 13 2 41 41 H 0.97002 * 120.00416 * 359.97438 * 17 15 14 42 42 H 1.09000 * 109.19527 * 73.50488 * 20 18 17 43 43 H 1.08998 * 109.20152 * 314.21558 * 20 18 17 44 44 H 1.08998 * 109.96153 * 161.63458 * 21 20 18 45 45 H 1.09007 * 110.03091 * 40.38665 * 21 20 18 46 46 H 1.09000 * 109.92418 * 233.68950 * 27 26 25 47 47 H 1.08995 * 109.92081 * 354.87011 * 27 26 25 48 48 H 1.08998 * 109.13086 * 286.16269 * 28 18 17 49 49 H 1.09006 * 109.12946 * 45.26523 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 1.5376 -0.0106 -2.4797 6 1 0.9170 0.8677 -2.3806 7 6 1.8711 -0.4813 -3.7320 8 7 2.6272 -1.5506 -3.8528 9 14 1.2478 0.3990 -5.2571 10 1 1.7417 1.7994 -5.2569 11 1 1.7429 -0.3009 -6.4697 12 1 -0.2372 0.3979 -5.2572 13 6 2.0400 -0.7213 1.2491 14 7 1.5516 -0.0308 2.4454 15 6 1.8769 -0.4916 3.6694 16 8 2.5752 -1.4806 3.7809 17 7 1.4280 0.1440 4.7699 18 6 1.7811 -0.3573 6.1005 19 1 2.8139 -0.7039 6.0649 20 6 1.7083 0.7980 7.0703 21 6 2.3880 0.4393 8.4011 22 6 1.4055 -0.4125 9.1845 23 7 0.8100 -0.1208 10.3063 24 7 0.0604 -1.1260 10.6204 25 7 0.1721 -2.0437 9.7186 26 7 0.9932 -1.6313 8.8217 27 6 1.4340 -2.3416 7.6045 28 6 0.9002 -1.5446 6.4018 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9564 0.8901 35 1 3.1300 -0.7207 -1.2496 36 1 1.6765 -1.7488 -1.2494 37 1 2.8615 -1.8818 -4.7338 38 1 3.1300 -0.7209 1.2494 39 1 1.6767 -1.7490 1.2491 40 1 0.9942 0.7581 2.3564 41 1 0.8712 0.9332 4.6810 42 1 0.6629 1.0441 7.2567 43 1 2.2074 1.6636 6.6348 44 1 2.6191 1.3475 8.9576 45 1 3.3019 -0.1245 8.2134 46 1 2.5228 -2.3805 7.5710 47 1 1.0249 -3.3518 7.5954 48 1 -0.1080 -1.1944 6.6230 49 1 0.8674 -2.1958 5.5283 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001427664745.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:49 Heat of formation + Delta-G solvation = 71.859324 kcal Electronic energy + Delta-G solvation = -29203.903437 eV Core-core repulsion = 25203.265691 eV Total energy + Delta-G solvation = -4000.637745 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.67479 -40.44771 -38.45124 -37.11711 -35.60262 -34.26056 -33.70771 -32.27421 -31.84756 -31.26055 -27.37913 -26.93832 -26.58728 -25.70606 -25.56304 -23.95240 -22.97210 -21.66573 -21.39749 -20.78809 -18.95590 -18.15532 -17.79834 -17.25522 -16.77193 -16.29344 -16.01730 -15.51966 -15.08484 -14.82010 -14.51907 -14.45696 -14.10328 -13.97999 -13.77019 -13.44810 -13.18637 -13.11931 -12.81987 -12.54738 -12.50146 -12.26405 -12.22460 -12.10586 -11.89600 -11.42934 -11.39864 -11.23379 -11.20106 -11.05942 -10.92357 -10.69183 -10.46933 -10.42772 -10.32184 -10.18349 -9.94458 -9.46790 -9.26957 -8.99725 -8.72717 -8.40439 -6.04637 -4.06255 0.94025 1.60092 1.89460 2.53716 3.18461 3.28210 3.34083 3.34966 3.39079 3.78631 3.84919 3.97831 4.18316 4.31645 4.41181 4.47895 4.48884 4.61935 4.66877 4.87614 5.00293 5.16130 5.20804 5.23452 5.30700 5.35602 5.41095 5.48181 5.55595 5.57674 5.66997 5.82176 6.09199 6.12714 6.16646 6.20623 6.32395 6.49500 6.55812 6.68367 6.85598 6.99392 7.00520 7.06709 7.58026 7.70210 7.93356 7.99521 8.27827 8.34941 8.58875 8.98235 9.57034 11.06649 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.036403 B = 0.001853 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.988008 B =15110.665187 C =15295.819017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.126 4.126 4 C 0.037 3.963 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.147 3.853 14 N -0.735 5.735 15 C 0.700 3.300 16 O -0.593 6.593 17 N -0.752 5.752 18 C 0.160 3.840 19 H 0.089 0.911 20 C -0.129 4.129 21 C -0.031 4.031 22 C 0.178 3.822 23 N -0.302 5.302 24 N -0.086 5.086 25 N -0.092 5.092 26 N -0.301 5.301 27 C 0.119 3.881 28 C -0.148 4.148 29 H 0.027 0.973 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.027 0.973 35 H 0.019 0.981 36 H 0.018 0.982 37 H 0.261 0.739 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.394 0.606 41 H 0.396 0.604 42 H 0.075 0.925 43 H 0.098 0.902 44 H 0.116 0.884 45 H 0.102 0.898 46 H 0.116 0.884 47 H 0.122 0.878 48 H 0.076 0.924 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.140 4.637 22.438 22.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.183 4.183 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.023 3.977 14 N -0.390 5.390 15 C 0.400 3.600 16 O -0.471 6.471 17 N -0.408 5.408 18 C 0.054 3.946 19 H 0.107 0.893 20 C -0.168 4.168 21 C -0.072 4.072 22 C -0.101 4.101 23 N -0.151 5.151 24 N -0.079 5.079 25 N -0.078 5.078 26 N -0.104 5.104 27 C -0.002 4.002 28 C -0.188 4.188 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.046 0.954 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.229 0.771 41 H 0.229 0.771 42 H 0.094 0.906 43 H 0.117 0.883 44 H 0.135 0.865 45 H 0.120 0.880 46 H 0.134 0.866 47 H 0.140 0.860 48 H 0.094 0.906 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.283 3.290 23.446 23.710 hybrid contribution -0.367 1.083 -1.864 2.187 sum -1.650 4.373 21.582 22.082 Atomic orbital electron populations 1.21755 0.95304 1.01146 1.00160 1.20917 0.95443 0.95880 0.95057 1.21755 1.00550 0.95885 1.00159 1.19083 0.96371 0.95218 0.89408 1.21131 1.31336 1.12115 0.90521 0.92334 1.25017 0.95298 0.95091 0.99104 1.69950 1.36803 1.22958 1.23595 0.86704 0.79137 0.79753 0.82650 1.20330 1.21388 1.20342 1.21511 0.98691 0.95624 0.81824 1.45411 1.55866 1.33103 1.04577 1.16021 0.80362 0.83027 0.80598 1.90913 1.42827 1.27410 1.85964 1.45313 1.57705 1.33369 1.04412 1.20122 1.00307 0.92639 0.81491 0.89278 1.21656 1.02752 0.98793 0.93628 1.20627 0.94051 0.99095 0.93446 1.26011 1.01449 0.87674 0.94923 1.74960 1.08867 1.20580 1.10645 1.78885 1.16193 0.95219 1.17622 1.78881 1.09477 1.22500 0.96947 1.48742 1.28801 1.13518 1.19354 1.22865 1.02200 0.97495 0.77664 1.22212 1.00383 0.98242 0.97940 0.95361 0.91452 0.93372 0.93346 0.91456 0.95350 0.96315 0.96334 0.92949 0.91929 0.91967 0.77076 0.77052 0.90581 0.88346 0.86527 0.87979 0.86595 0.85969 0.90572 0.87163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 8.05 37.15 0.30 -1.76 16 2 C -0.07 -1.27 0.54 -154.51 -0.08 -1.36 16 3 C -0.13 -2.04 8.05 37.16 0.30 -1.75 16 4 C 0.04 0.86 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.15 7.65 -34.44 -0.26 -13.41 16 6 H 0.06 1.44 5.68 -52.49 -0.30 1.14 16 7 C 0.06 1.52 5.46 -17.82 -0.10 1.43 16 8 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 9 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 13 C 0.15 2.36 4.56 -4.04 -0.02 2.34 16 14 N -0.73 -9.04 4.96 -65.23 -0.32 -9.37 16 15 C 0.70 8.46 8.17 -86.92 -0.71 7.75 16 16 O -0.59 -9.39 15.47 5.30 0.08 -9.31 16 17 N -0.75 -5.59 5.00 -60.72 -0.30 -5.90 16 18 C 0.16 0.93 1.91 -69.99 -0.13 0.80 16 19 H 0.09 0.60 7.14 -51.93 -0.37 0.23 16 20 C -0.13 -0.49 4.99 -27.38 -0.14 -0.63 16 21 C -0.03 -0.12 6.00 -26.98 -0.16 -0.28 16 22 C 0.18 1.43 7.10 -156.72 -1.11 0.31 16 23 N -0.30 -3.44 12.37 32.63 0.40 -3.04 16 24 N -0.09 -1.11 13.45 60.32 0.81 -0.30 16 25 N -0.09 -1.05 13.36 60.35 0.81 -0.24 16 26 N -0.30 -2.46 3.36 -57.13 -0.19 -2.65 16 27 C 0.12 0.62 6.75 -2.97 -0.02 0.60 16 28 C -0.15 -0.91 5.16 -27.36 -0.14 -1.05 16 29 H 0.03 0.36 6.86 -51.93 -0.36 0.01 16 30 H 0.07 1.20 6.62 -51.93 -0.34 0.86 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 1.20 6.62 -51.93 -0.34 0.85 16 34 H 0.03 0.36 6.86 -51.92 -0.36 0.00 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.39 4.00 6.18 -40.82 -0.25 3.75 16 41 H 0.40 2.05 8.55 -40.82 -0.35 1.70 16 42 H 0.08 0.34 7.92 -51.93 -0.41 -0.07 16 43 H 0.10 0.26 8.13 -51.93 -0.42 -0.16 16 44 H 0.12 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.10 0.23 7.90 -51.92 -0.41 -0.18 16 46 H 0.12 0.38 7.87 -51.93 -0.41 -0.02 16 47 H 0.12 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.08 0.51 8.08 -51.93 -0.42 0.09 16 49 H 0.11 0.88 7.23 -51.93 -0.38 0.51 16 LS Contribution 385.63 15.07 5.81 5.81 Total: -1.00 -33.88 385.63 -7.22 -41.10 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -7.63 Total: -0.48 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -2.39 Total: -6.26 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: 1.94 Total: -46.52 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.08 Total: -9.31 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.88 -7.22 -41.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001427664745.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.955 kcal (2) G-P(sol) polarization free energy of solvation -33.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds