Wall clock time and date at job start Tue Mar 31 2020 19:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47221 * 2 1 4 4 C 1.53002 * 109.47000 * 240.00684 * 2 1 3 5 5 C 1.50697 * 109.47341 * 59.99816 * 4 2 1 6 6 H 1.07997 * 120.00269 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99853 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00405 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99812 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47145 * 60.00201 * 9 7 5 11 11 H 1.48503 * 109.47075 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47435 * 300.00224 * 9 7 5 13 13 C 1.52998 * 109.47588 * 120.00371 * 2 1 3 14 14 N 1.46502 * 109.46781 * 300.00346 * 13 2 1 15 15 C 1.34779 * 119.99603 * 179.97438 * 14 13 2 16 16 O 1.21578 * 120.00469 * 359.97438 * 15 14 13 17 17 N 1.34778 * 119.99531 * 179.97438 * 15 14 13 18 18 C 1.46508 * 119.99829 * 179.97438 * 17 15 14 19 19 H 1.08995 * 107.90737 * 38.38481 * 18 17 15 20 20 C 1.51011 * 108.05415 * 154.99841 * 18 17 15 21 21 C 1.53677 * 110.86702 * 193.86034 * 20 18 17 22 22 C 1.51810 * 106.95005 * 280.99208 * 21 20 18 23 23 N 1.30308 * 127.91144 * 245.58718 * 22 21 20 24 24 N 1.29270 * 107.46767 * 180.02562 * 23 22 21 25 25 N 1.29147 * 109.42937 * 359.97438 * 24 23 22 26 26 N 1.28394 * 108.35636 * 359.97438 * 25 24 23 27 27 C 1.47658 * 127.75301 * 179.73937 * 26 25 24 28 28 C 1.50879 * 108.05152 * 281.81163 * 18 17 15 29 29 H 1.09000 * 109.47410 * 299.99897 * 1 2 3 30 30 H 1.09005 * 109.47377 * 59.99582 * 1 2 3 31 31 H 1.09002 * 109.47215 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47474 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47377 * 300.00209 * 3 2 1 34 34 H 1.09007 * 109.47102 * 60.00361 * 3 2 1 35 35 H 1.09006 * 109.47103 * 179.97438 * 4 2 1 36 36 H 1.09002 * 109.46725 * 299.99796 * 4 2 1 37 37 H 0.96994 * 119.99843 * 179.97438 * 8 7 5 38 38 H 1.08992 * 109.47568 * 180.02562 * 13 2 1 39 39 H 1.09002 * 109.46999 * 59.99676 * 13 2 1 40 40 H 0.97002 * 120.00344 * 359.97438 * 14 13 2 41 41 H 0.97002 * 120.00416 * 359.97438 * 17 15 14 42 42 H 1.09000 * 109.19527 * 73.50488 * 20 18 17 43 43 H 1.08998 * 109.20152 * 314.21558 * 20 18 17 44 44 H 1.08998 * 109.96153 * 161.63458 * 21 20 18 45 45 H 1.09007 * 110.03091 * 40.38665 * 21 20 18 46 46 H 1.09000 * 109.92418 * 233.68950 * 27 26 25 47 47 H 1.08995 * 109.92081 * 354.87011 * 27 26 25 48 48 H 1.08998 * 109.13086 * 286.16269 * 28 18 17 49 49 H 1.09006 * 109.12946 * 45.26523 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 1.5376 -0.0106 -2.4797 6 1 0.9170 0.8677 -2.3806 7 6 1.8711 -0.4813 -3.7320 8 7 2.6272 -1.5506 -3.8528 9 14 1.2478 0.3990 -5.2571 10 1 1.7417 1.7994 -5.2569 11 1 1.7429 -0.3009 -6.4697 12 1 -0.2372 0.3979 -5.2572 13 6 2.0400 -0.7213 1.2491 14 7 1.5516 -0.0308 2.4454 15 6 1.8769 -0.4916 3.6694 16 8 2.5752 -1.4806 3.7809 17 7 1.4280 0.1440 4.7699 18 6 1.7811 -0.3573 6.1005 19 1 2.8139 -0.7039 6.0649 20 6 1.7083 0.7980 7.0703 21 6 2.3880 0.4393 8.4011 22 6 1.4055 -0.4125 9.1845 23 7 0.8100 -0.1208 10.3063 24 7 0.0604 -1.1260 10.6204 25 7 0.1721 -2.0437 9.7186 26 7 0.9932 -1.6313 8.8217 27 6 1.4340 -2.3416 7.6045 28 6 0.9002 -1.5446 6.4018 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9564 0.8901 35 1 3.1300 -0.7207 -1.2496 36 1 1.6765 -1.7488 -1.2494 37 1 2.8615 -1.8818 -4.7338 38 1 3.1300 -0.7209 1.2494 39 1 1.6767 -1.7490 1.2491 40 1 0.9942 0.7581 2.3564 41 1 0.8712 0.9332 4.6810 42 1 0.6629 1.0441 7.2567 43 1 2.2074 1.6636 6.6348 44 1 2.6191 1.3475 8.9576 45 1 3.3019 -0.1245 8.2134 46 1 2.5228 -2.3805 7.5710 47 1 1.0249 -3.3518 7.5954 48 1 -0.1080 -1.1944 6.6230 49 1 0.8674 -2.1958 5.5283 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001427664745.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:48 Heat of formation + Delta-G solvation = 47.532679 kcal Electronic energy + Delta-G solvation = -29204.958319 eV Core-core repulsion = 25203.265691 eV Total energy + Delta-G solvation = -4001.692628 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.38587 -41.32865 -39.33927 -38.30058 -36.27488 -35.18899 -34.94258 -33.90310 -32.43928 -32.03871 -29.07942 -27.95765 -27.92436 -26.75981 -26.11709 -24.80225 -24.59594 -22.34488 -21.94125 -21.65832 -20.11774 -19.03012 -18.72629 -18.34214 -17.93267 -17.48086 -16.61954 -16.54914 -16.34857 -15.88027 -15.57719 -15.42808 -14.98870 -14.85899 -14.70718 -14.44733 -14.31418 -14.06956 -13.90553 -13.73978 -13.65153 -13.14462 -12.91609 -12.85783 -12.80695 -12.74176 -12.55970 -12.42721 -12.29454 -12.19766 -12.05682 -11.97679 -11.88644 -11.82191 -11.49328 -11.34741 -11.05479 -10.91944 -10.82592 -10.48656 -10.32463 -9.73179 -8.12240 -6.19654 0.26286 1.04333 1.13986 1.43852 1.45347 1.52528 1.71846 2.23397 2.45528 2.92021 3.22168 3.23615 3.27423 3.43851 3.70141 3.79953 4.02343 4.05493 4.06938 4.14361 4.17627 4.21623 4.26930 4.42354 4.43605 4.71924 4.72622 4.77778 4.78871 4.81015 4.85375 4.90430 5.00778 5.06873 5.10404 5.15948 5.16620 5.28225 5.44650 5.52306 5.54127 5.54707 5.58268 5.63892 5.84411 5.92588 6.06684 6.33555 6.95542 7.17281 7.47917 7.52555 7.66311 8.99777 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.036403 B = 0.001853 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.988008 B =15110.665187 C =15295.819017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.064 4.064 3 C -0.121 4.121 4 C 0.040 3.960 5 C -0.513 4.513 6 H 0.072 0.928 7 C -0.006 4.006 8 N -0.937 5.937 9 Si 0.957 3.043 10 H -0.267 1.267 11 H -0.293 1.293 12 H -0.268 1.268 13 C 0.164 3.836 14 N -0.726 5.726 15 C 0.700 3.300 16 O -0.632 6.632 17 N -0.731 5.731 18 C 0.159 3.841 19 H 0.087 0.913 20 C -0.119 4.119 21 C -0.028 4.028 22 C 0.188 3.812 23 N -0.331 5.331 24 N -0.120 5.120 25 N -0.111 5.111 26 N -0.296 5.296 27 C 0.116 3.884 28 C -0.140 4.140 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.035 0.965 32 H 0.037 0.963 33 H 0.052 0.948 34 H 0.071 0.929 35 H -0.013 1.013 36 H -0.015 1.015 37 H 0.259 0.741 38 H 0.044 0.956 39 H 0.042 0.958 40 H 0.409 0.591 41 H 0.411 0.589 42 H 0.072 0.928 43 H 0.120 0.880 44 H 0.134 0.866 45 H 0.125 0.875 46 H 0.141 0.859 47 H 0.129 0.871 48 H 0.070 0.930 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.577 7.181 23.234 24.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.065 4.065 3 C -0.178 4.178 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.090 0.910 7 C -0.203 4.203 8 N -0.579 5.579 9 Si 0.782 3.218 10 H -0.191 1.191 11 H -0.219 1.219 12 H -0.193 1.193 13 C 0.039 3.961 14 N -0.382 5.382 15 C 0.400 3.600 16 O -0.513 6.513 17 N -0.388 5.388 18 C 0.054 3.946 19 H 0.105 0.895 20 C -0.157 4.157 21 C -0.068 4.068 22 C -0.091 4.091 23 N -0.180 5.180 24 N -0.113 5.113 25 N -0.097 5.097 26 N -0.099 5.099 27 C -0.003 4.003 28 C -0.180 4.180 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.005 0.995 36 H 0.004 0.996 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.246 0.754 41 H 0.248 0.752 42 H 0.091 0.909 43 H 0.139 0.861 44 H 0.152 0.848 45 H 0.143 0.857 46 H 0.159 0.841 47 H 0.148 0.852 48 H 0.088 0.912 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.763 5.891 24.278 25.045 hybrid contribution -0.194 0.256 -2.089 2.114 sum -1.957 6.146 22.189 23.108 Atomic orbital electron populations 1.21686 0.93768 1.00839 1.01531 1.20700 0.96532 0.96337 0.92898 1.21684 0.99922 0.94613 1.01565 1.18970 0.94332 0.94175 0.92325 1.21571 1.30369 1.12059 0.91126 0.91000 1.25940 0.95755 0.95911 1.02686 1.70109 1.38748 1.24919 1.24076 0.85623 0.78900 0.78787 0.78454 1.19148 1.21857 1.19276 1.20995 0.97481 0.94822 0.82830 1.45052 1.56152 1.33353 1.03687 1.16126 0.80043 0.82699 0.81178 1.90897 1.44608 1.29259 1.86531 1.45149 1.56775 1.33150 1.03697 1.20308 1.00001 0.93323 0.80941 0.89455 1.21585 1.02944 0.98356 0.92858 1.20924 0.93657 0.99437 0.92811 1.26721 1.00755 0.87579 0.94009 1.74879 1.09775 1.20847 1.12478 1.78849 1.17590 0.96077 1.18829 1.78803 1.10538 1.22787 0.97599 1.48928 1.27954 1.13741 1.19264 1.23125 1.03638 0.97458 0.76107 1.22081 1.00273 0.98193 0.97467 0.91082 0.92877 0.94585 0.94400 0.92905 0.90986 0.99480 0.99613 0.93234 0.93725 0.93921 0.75380 0.75219 0.90900 0.86141 0.84821 0.85655 0.84141 0.85241 0.91151 0.88926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.73 8.05 71.98 0.58 -3.15 16 2 C -0.06 -2.22 0.54 -52.18 -0.03 -2.25 16 3 C -0.12 -3.67 8.05 71.98 0.58 -3.09 16 4 C 0.04 1.93 4.04 29.85 0.12 2.05 16 5 C -0.51 -26.59 7.65 25.60 0.20 -26.40 16 6 H 0.07 3.47 5.68 -2.91 -0.02 3.45 16 7 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 8 N -0.94 -55.81 13.29 21.45 0.28 -55.52 16 9 Si 0.96 42.55 29.54 68.60 2.03 44.58 16 10 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 11 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 13 C 0.16 5.22 4.56 86.38 0.39 5.61 16 14 N -0.73 -16.16 4.96 -478.55 -2.37 -18.54 16 15 C 0.70 15.41 8.17 179.05 1.46 16.87 16 16 O -0.63 -19.38 15.47 -3.96 -0.06 -19.44 16 17 N -0.73 -8.54 5.00 -464.28 -2.32 -10.86 16 18 C 0.16 1.38 1.91 43.65 0.08 1.46 16 19 H 0.09 0.88 7.14 -2.39 -0.02 0.87 16 20 C -0.12 -0.44 4.99 30.17 0.15 -0.29 16 21 C -0.03 -0.12 6.00 30.43 0.18 0.07 16 22 C 0.19 2.65 7.10 139.13 0.99 3.63 16 23 N -0.33 -7.29 12.37 -50.67 -0.63 -7.92 16 24 N -0.12 -3.12 13.45 36.91 0.50 -2.63 16 25 N -0.11 -2.48 13.36 37.02 0.49 -1.99 16 26 N -0.30 -4.41 3.36 -334.65 -1.12 -5.53 16 27 C 0.12 0.99 6.75 86.44 0.58 1.58 16 28 C -0.14 -1.46 5.16 30.19 0.16 -1.30 16 29 H 0.07 1.57 6.86 -2.39 -0.02 1.56 16 30 H 0.05 1.79 6.62 -2.38 -0.02 1.78 16 31 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.05 1.77 6.62 -2.39 -0.02 1.75 16 34 H 0.07 1.55 6.86 -2.38 -0.02 1.54 16 35 H -0.01 -0.72 8.14 -2.38 -0.02 -0.74 16 36 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 37 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 38 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.41 6.62 6.18 -92.71 -0.57 6.05 16 41 H 0.41 2.53 8.55 -92.71 -0.79 1.74 16 42 H 0.07 0.39 7.92 -2.39 -0.02 0.37 16 43 H 0.12 0.04 8.13 -2.39 -0.02 0.02 16 44 H 0.13 0.22 8.14 -2.39 -0.02 0.20 16 45 H 0.13 0.03 7.90 -2.38 -0.02 0.01 16 46 H 0.14 0.55 7.87 -2.39 -0.02 0.53 16 47 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.07 0.83 8.08 -2.39 -0.02 0.81 16 49 H 0.09 1.38 7.23 -2.38 -0.02 1.36 16 Total: -1.00 -78.16 385.63 2.32 -75.84 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -0.38 Total: 7.09 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: 5.91 Total: -5.08 kcal Atomic # 7 Polarization: -97.81 SS G_CDS: -5.17 Total: -102.98 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.06 Total: -19.44 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -78.16 2.32 -75.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001427664745.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.372 kcal (2) G-P(sol) polarization free energy of solvation -78.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds