Wall clock time and date at job start Tue Mar 31 2020 19:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47592 * 2 1 4 4 C 1.50698 * 109.47189 * 119.99997 * 2 1 3 5 5 N 1.30709 * 125.52710 * 299.69384 * 4 2 1 6 6 N 1.40450 * 106.79599 * 179.85685 * 5 4 2 7 7 H 0.96996 * 126.82321 * 180.15224 * 6 5 4 8 8 C 1.34433 * 106.34774 * 0.40421 * 6 5 4 9 9 C 1.50695 * 125.95563 * 179.73750 * 8 6 5 10 10 N 1.46508 * 109.47408 * 95.02069 * 9 8 6 11 11 C 1.34774 * 120.00115 * 179.97438 * 10 9 8 12 12 O 1.21593 * 119.99985 * 354.91699 * 11 10 9 13 13 N 1.34769 * 119.99976 * 174.92090 * 11 10 9 14 14 C 1.47084 * 120.88292 * 184.71947 * 13 11 10 15 15 C 1.53699 * 108.27900 * 128.75187 * 14 13 11 16 16 N 1.46898 * 109.25753 * 54.08123 * 15 14 13 17 17 C 1.46897 * 111.00199 * 172.60700 * 16 15 14 18 18 C 1.50702 * 109.47194 * 294.30211 * 17 16 15 19 19 H 1.08005 * 119.99861 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00244 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00094 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99654 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47378 * 90.00094 * 22 20 18 24 24 H 1.48505 * 109.46912 * 210.00092 * 22 20 18 25 25 H 1.48505 * 109.46990 * 329.99391 * 22 20 18 26 26 C 1.46898 * 111.27015 * 296.75945 * 16 15 14 27 27 C 1.47080 * 120.88206 * 4.99047 * 13 11 10 28 28 N 1.30830 * 108.08081 * 359.75217 * 8 6 5 29 29 H 1.09002 * 109.47066 * 59.99857 * 1 2 3 30 30 H 1.08997 * 109.47220 * 300.00265 * 1 2 3 31 31 H 1.08997 * 109.47216 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47505 * 239.99792 * 2 1 3 33 33 H 1.08990 * 109.47775 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47032 * 300.00164 * 3 2 1 35 35 H 1.09005 * 109.46865 * 59.99400 * 3 2 1 36 36 H 1.09007 * 109.47129 * 215.01858 * 9 8 6 37 37 H 1.08999 * 109.47512 * 335.01895 * 9 8 6 38 38 H 0.97001 * 119.99625 * 359.97438 * 10 9 8 39 39 H 1.09002 * 109.62582 * 248.52019 * 14 13 11 40 40 H 1.08997 * 109.62657 * 9.09569 * 14 13 11 41 41 H 1.09000 * 109.64790 * 294.07802 * 15 14 13 42 42 H 1.08999 * 109.41813 * 173.94399 * 15 14 13 43 43 H 1.09003 * 109.46810 * 54.30191 * 17 16 15 44 44 H 1.08998 * 109.47181 * 174.30035 * 17 16 15 45 45 H 0.97000 * 119.99761 * 179.97438 * 21 20 18 46 46 H 1.09004 * 109.49156 * 303.14403 * 26 16 15 47 47 H 1.09000 * 109.49371 * 183.06271 * 26 16 15 48 48 H 1.09001 * 109.62808 * 350.89834 * 27 13 11 49 49 H 1.09001 * 109.62714 * 111.48118 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7887 -0.3560 2.4648 6 7 2.4399 -1.2870 3.2904 7 1 2.4480 -1.2983 4.2603 8 6 3.0546 -2.1561 2.4693 9 6 3.8895 -3.3362 2.8947 10 7 3.0566 -4.5412 2.9169 11 6 3.5942 -5.7257 3.2698 12 8 4.7886 -5.8126 3.4801 13 7 2.8079 -6.8136 3.3896 14 6 3.3546 -8.0908 3.8726 15 6 2.4604 -8.5963 5.0159 16 7 1.0675 -8.6532 4.5527 17 6 0.2055 -9.2951 5.5540 18 6 0.6005 -10.7417 5.7037 19 1 1.4113 -11.1438 5.1142 20 6 -0.0723 -11.5516 6.5939 21 7 0.2729 -12.8138 6.7249 22 14 -1.4741 -10.8558 7.6139 23 1 -2.7528 -11.0239 6.8779 24 1 -1.5498 -11.5783 8.9092 25 1 -1.2338 -9.4121 7.8658 26 6 0.5663 -7.3166 4.2058 27 6 1.3816 -6.7569 3.0351 28 7 2.8016 -1.7983 1.2365 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 4.7094 -3.4742 2.1897 37 1 4.2935 -3.1554 3.8908 38 1 2.1182 -4.4866 2.6775 39 1 3.3608 -8.8171 3.0599 40 1 4.3697 -7.9391 4.2396 41 1 2.5336 -7.9179 5.8659 42 1 2.7847 -9.5927 5.3162 43 1 0.3195 -8.7864 6.5113 44 1 -0.8339 -9.2338 5.2315 45 1 -0.2003 -13.3834 7.3514 46 1 0.6660 -6.6559 5.0670 47 1 -0.4829 -7.3848 3.9186 48 1 1.0915 -5.7230 2.8482 49 1 1.2017 -7.3576 2.1435 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434806199.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:14 Heat of formation + Delta-G solvation = 71.300609 kcal Electronic energy + Delta-G solvation = -28832.524490 eV Core-core repulsion = 24831.862517 eV Total energy + Delta-G solvation = -4000.661973 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.69879 -40.36596 -37.89798 -36.35679 -35.09405 -34.55805 -32.68085 -32.42756 -31.51933 -30.68505 -28.89767 -27.59093 -27.18071 -25.53038 -24.20553 -23.36222 -22.02209 -21.53395 -20.74684 -20.09367 -19.57813 -18.63166 -17.93661 -16.91477 -16.64785 -15.80273 -15.76550 -15.33421 -15.25643 -14.75555 -14.63899 -14.48841 -14.34237 -14.19223 -13.80282 -13.61240 -13.51330 -13.45157 -12.90600 -12.61547 -12.50042 -12.37802 -12.23978 -11.96315 -11.71029 -11.65964 -11.40974 -11.30565 -10.99674 -10.85130 -10.60448 -10.55016 -10.48589 -10.45876 -10.22747 -9.97819 -9.92683 -9.46044 -9.37190 -8.63766 -8.49964 -7.52068 -6.11655 -4.09848 0.97065 2.06401 2.25622 2.74248 3.10906 3.22692 3.30773 3.31255 3.35814 3.75942 4.05055 4.18404 4.35349 4.53546 4.59102 4.68290 4.83650 5.01527 5.06090 5.14498 5.16470 5.21648 5.24233 5.30434 5.38803 5.40522 5.50637 5.52383 5.70016 5.76770 5.78217 5.78386 5.79786 5.91077 6.00456 6.01108 6.07006 6.28201 6.43608 6.49156 6.52911 6.73715 6.86225 6.88990 7.48322 7.61129 7.72244 7.82703 7.90192 8.47144 8.56352 8.96084 9.49393 11.01154 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.018344 B = 0.002119 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.057991 B =13213.152391 C =14111.093245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.003 4.003 3 C -0.143 4.143 4 C 0.233 3.767 5 N -0.302 5.302 6 N -0.471 5.471 7 H 0.443 0.557 8 C 0.269 3.731 9 C 0.221 3.779 10 N -0.747 5.747 11 C 0.713 3.287 12 O -0.590 6.590 13 N -0.622 5.622 14 C 0.133 3.867 15 C 0.050 3.950 16 N -0.525 5.525 17 C 0.163 3.837 18 C -0.512 4.512 19 H 0.082 0.918 20 C 0.069 3.931 21 N -0.897 5.897 22 Si 0.875 3.125 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.269 1.269 26 C 0.038 3.962 27 C 0.119 3.881 28 N -0.519 5.519 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.399 0.601 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.025 0.975 42 H 0.104 0.896 43 H -0.012 1.012 44 H 0.025 0.975 45 H 0.264 0.736 46 H 0.026 0.974 47 H 0.081 0.919 48 H 0.068 0.932 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.578 26.869 -10.994 29.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.024 4.024 3 C -0.202 4.202 4 C -0.050 4.050 5 N -0.131 5.131 6 N -0.190 5.190 7 H 0.289 0.711 8 C -0.010 4.010 9 C 0.094 3.906 10 N -0.408 5.408 11 C 0.414 3.586 12 O -0.468 6.468 13 N -0.359 5.359 14 C 0.011 3.989 15 C -0.079 4.079 16 N -0.250 5.250 17 C 0.037 3.963 18 C -0.551 4.551 19 H 0.100 0.900 20 C -0.133 4.133 21 N -0.536 5.536 22 Si 0.702 3.298 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.194 1.194 26 C -0.092 4.092 27 C -0.005 4.005 28 N -0.248 5.248 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.118 0.882 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.125 0.875 37 H 0.109 0.891 38 H 0.236 0.764 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.043 0.957 42 H 0.122 0.878 43 H 0.006 0.994 44 H 0.043 0.957 45 H 0.074 0.926 46 H 0.045 0.955 47 H 0.099 0.901 48 H 0.086 0.914 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.092 26.797 -11.274 29.236 hybrid contribution -1.308 0.620 2.045 2.505 sum 1.784 27.417 -9.229 28.984 Atomic orbital electron populations 1.21834 0.93063 1.02533 1.02787 1.19573 0.96241 0.95250 0.91299 1.21831 1.01352 0.94201 1.02778 1.24325 0.94789 0.92155 0.93727 1.78000 1.19687 1.13142 1.02264 1.48092 1.38835 1.21354 1.10705 0.71050 1.24252 0.95862 0.94479 0.86417 1.19412 0.90810 0.77355 1.02998 1.45095 1.13792 1.06377 1.75554 1.15664 0.84952 0.79869 0.78103 1.90923 1.13036 1.84453 1.58415 1.47410 1.09475 1.10267 1.68743 1.21883 0.97720 0.82122 0.97188 1.22507 0.88980 1.02233 0.94193 1.61890 1.02228 1.16100 1.44785 1.20178 0.92406 0.95611 0.88110 1.21002 1.19159 0.92026 1.22863 0.89967 1.24897 0.96991 0.94721 0.96647 1.69886 1.41526 1.05388 1.36794 0.86873 0.83253 0.79454 0.80200 1.20123 1.21162 1.19424 1.22433 0.98913 0.91575 0.96238 1.21762 0.79969 0.99892 0.98874 1.70432 1.19296 1.14945 1.20113 0.91311 0.91893 0.92323 0.88247 0.92427 0.91331 0.91892 0.87486 0.89142 0.76422 0.90709 0.89026 0.95666 0.87782 0.99390 0.95674 0.92579 0.95535 0.90059 0.91398 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.18 37.16 0.34 -0.55 16 2 C 0.00 -0.02 3.39 -91.78 -0.31 -0.33 16 3 C -0.14 -0.85 9.18 37.16 0.34 -0.51 16 4 C 0.23 2.29 6.65 -156.85 -1.04 1.25 16 5 N -0.30 -2.99 12.80 32.42 0.41 -2.57 16 6 N -0.47 -3.74 7.45 32.62 0.24 -3.49 16 7 H 0.44 2.24 8.96 -182.34 -1.63 0.60 16 8 C 0.27 2.40 7.60 -155.69 -1.18 1.21 16 9 C 0.22 1.91 6.30 -5.19 -0.03 1.87 16 10 N -0.75 -7.68 5.46 -66.41 -0.36 -8.04 16 11 C 0.71 9.94 8.31 -86.93 -0.72 9.22 16 12 O -0.59 -10.08 15.83 5.28 0.08 -10.00 16 13 N -0.62 -8.76 3.00 -177.90 -0.53 -9.30 16 14 C 0.13 2.08 6.61 -3.36 -0.02 2.06 16 15 C 0.05 0.90 5.47 -3.46 -0.02 0.89 16 16 N -0.53 -10.16 4.62 -235.47 -1.09 -11.25 16 17 C 0.16 3.75 3.79 -4.98 -0.02 3.73 16 18 C -0.51 -13.95 8.96 -34.44 -0.31 -14.26 16 19 H 0.08 2.43 7.37 -52.48 -0.39 2.04 16 20 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 21 N -0.90 -26.79 13.96 55.43 0.77 -26.02 16 22 Si 0.87 20.88 27.47 -169.99 -4.67 16.21 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 26 C 0.04 0.57 5.62 -3.70 -0.02 0.55 16 27 C 0.12 1.46 6.59 -3.60 -0.02 1.43 16 28 N -0.52 -5.54 11.19 -8.16 -0.09 -5.63 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.11 0.99 8.14 -51.92 -0.42 0.57 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.40 3.64 5.96 -40.82 -0.24 3.40 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.09 1.43 7.09 -51.93 -0.37 1.07 16 41 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.10 2.10 6.67 -51.93 -0.35 1.75 16 43 H -0.01 -0.27 7.18 -51.93 -0.37 -0.65 16 44 H 0.03 0.58 7.40 -51.93 -0.38 0.19 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.08 1.15 7.99 -51.93 -0.41 0.73 16 48 H 0.07 0.63 5.63 -51.93 -0.29 0.34 16 49 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 394.05 15.07 5.94 5.94 Total: -1.00 -33.91 394.05 -11.52 -45.43 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -9.11 Total: 0.30 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: -3.12 Total: 8.42 kcal Atomic # 7 Polarization: -65.66 SS G_CDS: -0.64 Total: -66.30 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.08 Total: -10.00 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.91 -11.52 -45.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434806199.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.731 kcal (2) G-P(sol) polarization free energy of solvation -33.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds