Wall clock time and date at job start Tue Mar 31 2020 19:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47592 * 2 1 4 4 C 1.50698 * 109.47189 * 119.99997 * 2 1 3 5 5 N 1.30709 * 125.52710 * 299.69384 * 4 2 1 6 6 N 1.40450 * 106.79599 * 179.85685 * 5 4 2 7 7 H 0.96996 * 126.82321 * 180.15224 * 6 5 4 8 8 C 1.34433 * 106.34774 * 0.40421 * 6 5 4 9 9 C 1.50695 * 125.95563 * 179.73750 * 8 6 5 10 10 N 1.46508 * 109.47408 * 95.02069 * 9 8 6 11 11 C 1.34774 * 120.00115 * 179.97438 * 10 9 8 12 12 O 1.21593 * 119.99985 * 354.91699 * 11 10 9 13 13 N 1.34769 * 119.99976 * 174.92090 * 11 10 9 14 14 C 1.47084 * 120.88292 * 184.71947 * 13 11 10 15 15 C 1.53699 * 108.27900 * 128.75187 * 14 13 11 16 16 N 1.46898 * 109.25753 * 54.08123 * 15 14 13 17 17 C 1.46897 * 111.00199 * 172.60700 * 16 15 14 18 18 C 1.50702 * 109.47194 * 294.30211 * 17 16 15 19 19 H 1.08005 * 119.99861 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00244 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00094 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99654 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47378 * 90.00094 * 22 20 18 24 24 H 1.48505 * 109.46912 * 210.00092 * 22 20 18 25 25 H 1.48505 * 109.46990 * 329.99391 * 22 20 18 26 26 C 1.46898 * 111.27015 * 296.75945 * 16 15 14 27 27 C 1.47080 * 120.88206 * 4.99047 * 13 11 10 28 28 N 1.30830 * 108.08081 * 359.75217 * 8 6 5 29 29 H 1.09002 * 109.47066 * 59.99857 * 1 2 3 30 30 H 1.08997 * 109.47220 * 300.00265 * 1 2 3 31 31 H 1.08997 * 109.47216 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47505 * 239.99792 * 2 1 3 33 33 H 1.08990 * 109.47775 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47032 * 300.00164 * 3 2 1 35 35 H 1.09005 * 109.46865 * 59.99400 * 3 2 1 36 36 H 1.09007 * 109.47129 * 215.01858 * 9 8 6 37 37 H 1.08999 * 109.47512 * 335.01895 * 9 8 6 38 38 H 0.97001 * 119.99625 * 359.97438 * 10 9 8 39 39 H 1.09002 * 109.62582 * 248.52019 * 14 13 11 40 40 H 1.08997 * 109.62657 * 9.09569 * 14 13 11 41 41 H 1.09000 * 109.64790 * 294.07802 * 15 14 13 42 42 H 1.08999 * 109.41813 * 173.94399 * 15 14 13 43 43 H 1.09003 * 109.46810 * 54.30191 * 17 16 15 44 44 H 1.08998 * 109.47181 * 174.30035 * 17 16 15 45 45 H 0.97000 * 119.99761 * 179.97438 * 21 20 18 46 46 H 1.09004 * 109.49156 * 303.14403 * 26 16 15 47 47 H 1.09000 * 109.49371 * 183.06271 * 26 16 15 48 48 H 1.09001 * 109.62808 * 350.89834 * 27 13 11 49 49 H 1.09001 * 109.62714 * 111.48118 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7887 -0.3560 2.4648 6 7 2.4399 -1.2870 3.2904 7 1 2.4480 -1.2983 4.2603 8 6 3.0546 -2.1561 2.4693 9 6 3.8895 -3.3362 2.8947 10 7 3.0566 -4.5412 2.9169 11 6 3.5942 -5.7257 3.2698 12 8 4.7886 -5.8126 3.4801 13 7 2.8079 -6.8136 3.3896 14 6 3.3546 -8.0908 3.8726 15 6 2.4604 -8.5963 5.0159 16 7 1.0675 -8.6532 4.5527 17 6 0.2055 -9.2951 5.5540 18 6 0.6005 -10.7417 5.7037 19 1 1.4113 -11.1438 5.1142 20 6 -0.0723 -11.5516 6.5939 21 7 0.2729 -12.8138 6.7249 22 14 -1.4741 -10.8558 7.6139 23 1 -2.7528 -11.0239 6.8779 24 1 -1.5498 -11.5783 8.9092 25 1 -1.2338 -9.4121 7.8658 26 6 0.5663 -7.3166 4.2058 27 6 1.3816 -6.7569 3.0351 28 7 2.8016 -1.7983 1.2365 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 4.7094 -3.4742 2.1897 37 1 4.2935 -3.1554 3.8908 38 1 2.1182 -4.4866 2.6775 39 1 3.3608 -8.8171 3.0599 40 1 4.3697 -7.9391 4.2396 41 1 2.5336 -7.9179 5.8659 42 1 2.7847 -9.5927 5.3162 43 1 0.3195 -8.7864 6.5113 44 1 -0.8339 -9.2338 5.2315 45 1 -0.2003 -13.3834 7.3514 46 1 0.6660 -6.6559 5.0670 47 1 -0.4829 -7.3848 3.9186 48 1 1.0915 -5.7230 2.8482 49 1 1.2017 -7.3576 2.1435 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434806199.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:13 Heat of formation + Delta-G solvation = 46.262918 kcal Electronic energy + Delta-G solvation = -28833.610205 eV Core-core repulsion = 24831.862517 eV Total energy + Delta-G solvation = -4001.747689 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.38835 -41.48645 -39.21940 -36.99474 -36.03234 -35.93459 -34.40792 -33.36936 -32.45535 -31.78332 -30.48650 -28.23123 -28.04724 -26.94651 -24.83495 -24.60087 -23.59017 -22.37772 -22.07454 -20.78817 -20.59150 -19.56665 -19.00222 -18.74243 -17.66230 -16.84068 -16.70902 -16.51221 -16.10055 -16.04581 -15.89546 -15.59611 -15.35832 -15.18401 -15.05371 -14.98891 -14.46603 -14.37195 -14.01554 -13.98398 -13.57450 -13.25115 -13.10365 -13.04376 -12.84894 -12.51359 -12.45296 -12.32991 -12.22974 -12.20313 -11.96593 -11.92705 -11.86314 -11.48669 -11.32619 -11.20503 -11.18918 -10.77270 -10.70497 -10.42219 -9.67425 -9.04851 -8.27145 -6.30641 0.26474 1.33186 1.35420 1.36789 1.46566 1.54985 1.85123 2.01775 2.34588 2.68663 2.82947 3.05089 3.14823 3.43743 3.55244 3.90991 4.02757 4.05260 4.10487 4.19045 4.23996 4.28625 4.40558 4.45884 4.46544 4.54558 4.69791 4.80004 4.81918 4.84941 4.89024 4.94850 4.94888 5.00110 5.01619 5.11026 5.13509 5.18734 5.24393 5.33184 5.36985 5.43139 5.52922 5.76574 5.96880 5.98588 6.28631 6.61643 6.76247 6.79500 6.92962 7.32862 7.39392 8.89102 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.018344 B = 0.002119 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.057991 B =13213.152391 C =14111.093245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.006 4.006 3 C -0.138 4.138 4 C 0.224 3.776 5 N -0.318 5.318 6 N -0.460 5.460 7 H 0.456 0.544 8 C 0.274 3.726 9 C 0.225 3.775 10 N -0.732 5.732 11 C 0.714 3.286 12 O -0.623 6.623 13 N -0.625 5.625 14 C 0.146 3.854 15 C 0.058 3.942 16 N -0.539 5.539 17 C 0.172 3.828 18 C -0.516 4.516 19 H 0.041 0.959 20 C 0.007 3.993 21 N -0.947 5.947 22 Si 0.947 3.053 23 H -0.263 1.263 24 H -0.286 1.286 25 H -0.252 1.252 26 C 0.036 3.964 27 C 0.124 3.876 28 N -0.544 5.544 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.102 0.898 33 H 0.049 0.951 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.407 0.593 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.022 0.978 42 H 0.072 0.928 43 H -0.015 1.015 44 H 0.035 0.965 45 H 0.266 0.734 46 H 0.030 0.970 47 H 0.097 0.903 48 H 0.105 0.895 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.050 29.780 -11.494 31.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.027 4.027 3 C -0.196 4.196 4 C -0.058 4.058 5 N -0.147 5.147 6 N -0.181 5.181 7 H 0.304 0.696 8 C -0.005 4.005 9 C 0.099 3.901 10 N -0.392 5.392 11 C 0.415 3.585 12 O -0.504 6.504 13 N -0.362 5.362 14 C 0.022 3.978 15 C -0.072 4.072 16 N -0.264 5.264 17 C 0.045 3.955 18 C -0.554 4.554 19 H 0.060 0.940 20 C -0.190 4.190 21 N -0.588 5.588 22 Si 0.771 3.229 23 H -0.188 1.188 24 H -0.211 1.211 25 H -0.176 1.176 26 C -0.093 4.093 27 C 0.002 3.998 28 N -0.274 5.274 29 H 0.107 0.893 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.120 0.880 33 H 0.068 0.932 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.120 0.880 37 H 0.126 0.874 38 H 0.245 0.755 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.040 0.960 42 H 0.090 0.910 43 H 0.003 0.997 44 H 0.053 0.947 45 H 0.075 0.925 46 H 0.048 0.952 47 H 0.115 0.885 48 H 0.123 0.877 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.545 29.764 -11.788 32.051 hybrid contribution -0.749 -0.273 2.141 2.284 sum 0.796 29.491 -9.647 31.039 Atomic orbital electron populations 1.21795 0.92286 1.02165 1.03388 1.19731 0.96846 0.95669 0.90445 1.21792 1.00832 0.93546 1.03412 1.24800 0.94533 0.92047 0.94439 1.77967 1.20333 1.13854 1.02582 1.48041 1.38071 1.20655 1.11293 0.69569 1.24138 0.95685 0.94446 0.86249 1.19471 0.90270 0.76484 1.03909 1.44920 1.14224 1.05684 1.74347 1.15708 0.84427 0.80429 0.77905 1.90907 1.14569 1.85026 1.59872 1.47373 1.10310 1.09740 1.68745 1.21584 0.96968 0.83069 0.96138 1.22352 0.89113 1.00470 0.95225 1.61781 1.02116 1.19070 1.43421 1.19935 0.93367 0.93114 0.89041 1.21261 1.17789 0.94473 1.21902 0.94047 1.25840 1.00095 0.94925 0.98147 1.70049 1.43426 1.07132 1.38145 0.85725 0.79683 0.79378 0.78162 1.18836 1.21136 1.17623 1.22579 1.00199 0.89118 0.97359 1.21849 0.78321 1.02044 0.97622 1.70425 1.20091 1.15710 1.21125 0.89345 0.92629 0.93125 0.87966 0.93153 0.89317 0.92605 0.87982 0.87372 0.75472 0.90838 0.89210 0.95983 0.91005 0.99735 0.94705 0.92498 0.95170 0.88513 0.87711 0.89759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.18 71.98 0.66 -0.82 16 2 C -0.01 -0.08 3.39 -11.54 -0.04 -0.11 16 3 C -0.14 -1.42 9.18 71.98 0.66 -0.76 16 4 C 0.22 4.09 6.65 138.63 0.92 5.01 16 5 N -0.32 -5.79 12.80 -51.34 -0.66 -6.45 16 6 N -0.46 -6.35 7.45 -50.71 -0.38 -6.73 16 7 H 0.46 3.55 8.96 -213.10 -1.91 1.64 16 8 C 0.27 4.32 7.60 138.22 1.05 5.37 16 9 C 0.23 3.39 6.30 85.63 0.54 3.93 16 10 N -0.73 -13.10 5.46 -482.28 -2.63 -15.73 16 11 C 0.71 18.52 8.31 179.06 1.49 20.01 16 12 O -0.62 -20.55 15.83 -4.01 -0.06 -20.61 16 13 N -0.63 -16.46 3.00 -835.03 -2.51 -18.97 16 14 C 0.15 4.52 6.61 86.50 0.57 5.09 16 15 C 0.06 2.12 5.47 86.54 0.47 2.59 16 16 N -0.54 -20.46 4.62 -898.88 -4.15 -24.61 16 17 C 0.17 7.80 3.79 85.56 0.32 8.13 16 18 C -0.52 -28.80 8.96 25.60 0.23 -28.57 16 19 H 0.04 2.58 7.37 -2.91 -0.02 2.56 16 20 C 0.01 0.42 5.47 84.65 0.46 0.88 16 21 N -0.95 -58.22 13.96 21.45 0.30 -57.92 16 22 Si 0.95 42.80 27.47 68.60 1.88 44.68 16 23 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 24 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 25 H -0.25 -10.62 6.54 99.48 0.65 -9.97 16 26 C 0.04 1.00 5.62 86.38 0.49 1.48 16 27 C 0.12 2.68 6.59 86.35 0.57 3.25 16 28 N -0.54 -10.74 11.19 -179.73 -2.01 -12.75 16 29 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 36 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 37 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.41 6.03 5.96 -92.71 -0.55 5.48 16 39 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.09 2.83 7.09 -2.39 -0.02 2.81 16 41 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.07 3.08 6.67 -2.39 -0.02 3.06 16 43 H -0.02 -0.69 7.18 -2.39 -0.02 -0.71 16 44 H 0.03 1.52 7.40 -2.39 -0.02 1.50 16 45 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 46 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.10 2.39 7.99 -2.39 -0.02 2.37 16 48 H 0.10 1.51 5.63 -2.39 -0.01 1.49 16 49 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -74.82 394.05 -3.36 -78.18 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -1.54 Total: 15.43 kcal Atomic # 6 Polarization: 17.08 SS G_CDS: 8.40 Total: 25.48 kcal Atomic # 7 Polarization: -131.12 SS G_CDS: -12.04 Total: -143.16 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.06 Total: -20.61 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.88 Total: 44.68 kcal Total: -74.82 -3.36 -78.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434806199.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.447 kcal (2) G-P(sol) polarization free energy of solvation -74.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds