Wall clock time and date at job start Tue Mar 31 2020 20:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47094 * 2 1 4 4 C 1.53008 * 109.47213 * 240.00031 * 2 1 3 5 5 N 1.46506 * 109.47133 * 120.00235 * 2 1 3 6 6 N 1.28720 * 125.31701 * 359.96790 * 5 2 1 7 7 N 1.28978 * 108.98182 * 180.02562 * 6 5 2 8 8 C 1.34186 * 107.25722 * 0.02562 * 7 6 5 9 9 C 1.48004 * 126.69705 * 179.97438 * 8 7 6 10 10 O 1.21539 * 119.99499 * 180.02562 * 9 8 7 11 11 N 1.34775 * 120.00486 * 0.02562 * 9 8 7 12 12 C 1.46497 * 120.00310 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47338 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.47335 * 179.97438 * 13 12 11 15 15 N 1.46505 * 109.46926 * 180.02562 * 14 13 12 16 16 C 1.36938 * 119.99704 * 269.99524 * 15 14 13 17 17 H 1.08002 * 119.99492 * 140.53695 * 16 15 14 18 18 C 1.38810 * 120.00117 * 320.54009 * 16 15 14 19 19 N 1.31616 * 119.99886 * 340.28455 * 18 16 15 20 20 Si 1.86801 * 119.99835 * 160.28420 * 18 16 15 21 21 H 1.48501 * 109.46852 * 59.99981 * 20 18 16 22 22 H 1.48497 * 109.47146 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47493 * 300.00116 * 20 18 16 24 24 C 1.46500 * 120.00058 * 90.00296 * 15 14 13 25 25 C 1.52994 * 117.49555 * 183.28572 * 24 15 14 26 26 C 1.52992 * 117.49879 * 114.66132 * 24 15 14 27 27 N 1.28862 * 125.31938 * 180.29233 * 5 2 1 28 28 H 1.08990 * 109.47170 * 299.99915 * 1 2 3 29 29 H 1.09007 * 109.47078 * 60.00387 * 1 2 3 30 30 H 1.09005 * 109.47038 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47321 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.46994 * 299.99897 * 3 2 1 33 33 H 1.08996 * 109.46927 * 59.99617 * 3 2 1 34 34 H 1.08996 * 109.46765 * 300.00164 * 4 2 1 35 35 H 1.08997 * 109.47250 * 59.99874 * 4 2 1 36 36 H 1.09000 * 109.46905 * 179.97438 * 4 2 1 37 37 H 0.97006 * 119.99231 * 0.02562 * 11 9 8 38 38 H 1.08991 * 109.47130 * 59.99974 * 12 11 9 39 39 H 1.09006 * 109.46949 * 299.99994 * 12 11 9 40 40 H 1.09003 * 109.46950 * 59.99725 * 13 12 11 41 41 H 1.09003 * 109.47157 * 300.00061 * 13 12 11 42 42 H 1.08998 * 109.46829 * 299.99539 * 14 13 12 43 43 H 1.08991 * 109.47019 * 59.99675 * 14 13 12 44 44 H 0.97005 * 119.99516 * 175.01509 * 19 18 16 45 45 H 1.09005 * 115.54906 * 328.99215 * 24 15 14 46 46 H 1.09000 * 117.50468 * 359.97438 * 25 24 15 47 47 H 1.09007 * 117.50001 * 145.02081 * 25 24 15 48 48 H 1.08999 * 117.50146 * 214.97496 * 26 24 15 49 49 H 1.08998 * 117.50173 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 7 2.0184 -0.6907 1.1962 6 7 1.2762 -1.2161 2.1072 7 7 2.0308 -1.7388 3.0133 8 6 3.3029 -1.5252 2.6437 9 6 4.5189 -1.9463 3.3748 10 8 5.6182 -1.6866 2.9260 11 7 4.4074 -2.6177 4.5381 12 6 5.6110 -3.0339 5.2620 13 6 5.2078 -3.7725 6.5398 14 6 6.4649 -4.2078 7.2955 15 7 6.0788 -4.9156 8.5188 16 6 5.8971 -4.2196 9.6840 17 1 5.0875 -4.4820 10.3490 18 6 6.7534 -3.1770 10.0105 19 7 7.9366 -3.0940 9.4401 20 14 6.2263 -1.8917 11.2594 21 1 5.9505 -2.5506 12.5613 22 1 7.3121 -0.8934 11.4306 23 1 4.9974 -1.2099 10.7796 24 6 5.8872 -6.3678 8.4954 25 6 5.4097 -7.0381 9.7851 26 6 6.8549 -7.2213 9.3173 27 7 3.2580 -0.8620 1.5036 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2075 -2.1393 36 1 3.1301 -0.7208 -1.2495 37 1 3.5299 -2.8252 4.8959 38 1 6.2015 -2.1551 5.5208 39 1 6.2034 -3.6968 4.6311 40 1 4.6175 -4.6514 6.2805 41 1 4.6153 -3.1100 7.1708 42 1 7.0570 -4.8705 6.6644 43 1 7.0556 -3.3292 7.5546 44 1 8.5056 -2.3277 9.6130 45 1 5.5299 -6.7797 7.5515 46 1 5.2385 -6.3988 10.6511 47 1 4.7380 -7.8914 9.6900 48 1 7.1340 -8.1950 8.9146 49 1 7.6344 -6.7025 9.8752 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479869483.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:17 Heat of formation + Delta-G solvation = 133.110670 kcal Electronic energy + Delta-G solvation = -28564.536325 eV Core-core repulsion = 24566.554637 eV Total energy + Delta-G solvation = -3997.981688 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -44.64516 -39.55123 -38.03536 -37.09802 -35.38991 -33.81737 -33.51211 -32.74826 -31.52325 -29.47893 -28.21372 -28.15945 -26.22006 -24.82811 -24.63736 -23.22131 -21.40462 -21.21174 -20.96589 -20.64742 -19.63327 -18.05604 -17.63580 -17.00811 -16.43468 -15.79061 -15.52919 -15.24294 -14.83622 -14.74999 -14.60670 -14.27816 -14.02908 -13.92618 -13.50321 -13.49783 -13.09589 -12.97165 -12.63192 -12.46530 -12.45228 -12.20366 -12.11563 -11.90565 -11.73784 -11.54059 -11.27733 -11.22640 -11.00642 -10.80092 -10.75667 -10.65250 -10.57603 -10.37851 -10.18383 -9.99263 -9.62492 -9.54435 -9.23157 -8.97294 -8.46080 -6.51958 -5.77645 -3.44793 0.82417 1.31658 1.39046 2.79849 3.07888 3.36053 3.42719 3.44186 3.62013 3.90931 3.92432 4.02473 4.38802 4.45148 4.81214 4.83076 4.84045 4.97273 4.99878 5.03383 5.05288 5.07648 5.18140 5.31880 5.33887 5.42126 5.48392 5.60548 5.63087 5.73012 5.84962 5.95046 5.99797 6.14271 6.27605 6.30438 6.38422 6.53192 6.64858 6.69289 6.72996 7.07156 7.11943 7.27449 7.43057 7.63274 7.80370 7.96140 8.11053 8.50688 9.16208 9.77046 10.35820 11.17043 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.016934 B = 0.002103 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.034047 B =13308.684474 C =13890.144831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.176 3.824 3 C -0.161 4.161 4 C -0.160 4.160 5 N -0.127 5.127 6 N -0.056 5.056 7 N -0.256 5.256 8 C 0.130 3.870 9 C 0.611 3.389 10 O -0.512 6.512 11 N -0.699 5.699 12 C 0.122 3.878 13 C -0.147 4.147 14 C 0.155 3.845 15 N -0.551 5.551 16 C -0.261 4.261 17 H 0.063 0.937 18 C 0.016 3.984 19 N -0.882 5.882 20 Si 0.895 3.105 21 H -0.281 1.281 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.121 3.879 25 C -0.196 4.196 26 C -0.222 4.222 27 N -0.246 5.246 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.410 0.590 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.053 0.947 41 H 0.069 0.931 42 H 0.030 0.970 43 H 0.096 0.904 44 H 0.256 0.744 45 H 0.086 0.914 46 H 0.096 0.904 47 H 0.073 0.927 48 H 0.068 0.932 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.328 5.827 -21.349 26.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.096 3.904 3 C -0.219 4.219 4 C -0.219 4.219 5 N -0.041 5.041 6 N -0.049 5.049 7 N -0.131 5.131 8 C -0.155 4.155 9 C 0.390 3.610 10 O -0.384 6.384 11 N -0.351 5.351 12 C -0.001 4.001 13 C -0.188 4.188 14 C 0.028 3.972 15 N -0.267 5.267 16 C -0.391 4.391 17 H 0.080 0.920 18 C -0.186 4.186 19 N -0.523 5.523 20 Si 0.724 3.276 21 H -0.207 1.207 22 H -0.216 1.216 23 H -0.208 1.208 24 C 0.012 3.988 25 C -0.234 4.234 26 C -0.263 4.263 27 N -0.099 5.099 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.245 0.755 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.048 0.952 43 H 0.114 0.886 44 H 0.066 0.934 45 H 0.104 0.896 46 H 0.115 0.885 47 H 0.091 0.909 48 H 0.087 0.913 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.925 6.205 -21.719 26.535 hybrid contribution -0.210 0.522 0.975 1.126 sum -14.135 6.727 -20.744 25.988 Atomic orbital electron populations 1.22112 0.89771 1.04770 1.04478 1.21526 0.96629 0.92890 0.79367 1.22267 1.03605 0.91834 1.04227 1.22264 1.03583 1.01124 0.94912 1.50757 1.00982 1.34316 1.18085 1.78876 1.21632 1.08912 0.95487 1.76153 1.00151 1.17515 1.19235 1.25455 0.94654 1.01950 0.93401 1.16160 0.84524 0.79225 0.81137 1.90854 1.25235 1.55106 1.67220 1.45928 1.12062 1.55687 1.21383 1.21631 0.85472 0.99776 0.93229 1.22503 1.02857 0.99339 0.94089 1.20755 0.92201 0.98636 0.85598 1.43325 1.78770 0.98713 1.05907 1.18970 1.07877 1.13218 0.98995 0.91956 1.25245 0.93777 1.01524 0.98009 1.70047 1.07067 1.29162 1.46060 0.86501 0.77827 0.81623 0.81621 1.20672 1.21576 1.20763 1.21234 1.00109 0.85063 0.92415 1.23014 0.97052 1.02196 1.01174 1.23344 0.93514 1.00999 1.08412 1.74986 1.02617 1.17051 1.15287 0.90448 0.89065 0.90460 0.90152 0.88928 0.91238 0.91253 0.88933 0.90170 0.75458 0.90790 0.91242 0.92809 0.91231 0.95166 0.88640 0.93433 0.89645 0.88514 0.90883 0.91343 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 7.90 37.16 0.29 -0.37 16 2 C 0.18 1.12 1.30 -131.81 -0.17 0.95 16 3 C -0.16 -0.83 8.66 37.16 0.32 -0.50 16 4 C -0.16 -0.79 8.67 37.16 0.32 -0.47 16 5 N -0.13 -1.38 3.72 0.53 0.00 -1.38 16 6 N -0.06 -0.70 12.21 60.35 0.74 0.04 16 7 N -0.26 -3.61 12.26 32.10 0.39 -3.22 16 8 C 0.13 1.93 8.14 -156.25 -1.27 0.66 16 9 C 0.61 9.91 7.84 -12.26 -0.10 9.81 16 10 O -0.51 -9.77 17.10 5.33 0.09 -9.68 16 11 N -0.70 -10.41 5.55 -61.20 -0.34 -10.75 16 12 C 0.12 1.97 5.67 -4.04 -0.02 1.95 16 13 C -0.15 -2.64 5.65 -26.73 -0.15 -2.79 16 14 C 0.15 3.39 5.33 -4.04 -0.02 3.37 16 15 N -0.55 -13.14 2.75 -165.67 -0.46 -13.60 16 16 C -0.26 -6.83 8.47 -15.06 -0.13 -6.96 16 17 H 0.06 1.65 6.75 -52.49 -0.35 1.29 16 18 C 0.02 0.42 4.98 -17.43 -0.09 0.33 16 19 N -0.88 -24.69 11.50 55.49 0.64 -24.05 16 20 Si 0.90 21.18 29.60 -169.99 -5.03 16.15 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.12 2.55 6.56 -67.94 -0.45 2.11 16 25 C -0.20 -3.88 9.80 -26.73 -0.26 -4.14 16 26 C -0.22 -4.56 10.36 -26.73 -0.28 -4.84 16 27 N -0.25 -3.37 11.85 32.11 0.38 -2.99 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.41 5.47 8.22 -40.82 -0.34 5.13 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 42 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 43 H 0.10 2.39 5.59 -51.93 -0.29 2.10 16 44 H 0.26 6.96 8.32 -40.82 -0.34 6.63 16 45 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 46 H 0.10 2.09 6.46 -51.93 -0.34 1.75 16 47 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 48 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 49 H 0.09 2.17 8.14 -51.93 -0.42 1.74 16 LS Contribution 409.00 15.07 6.16 6.16 Total: -1.00 -31.75 409.00 -7.47 -39.23 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -8.06 Total: 4.97 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -2.00 Total: -0.89 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: 1.36 Total: -55.94 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -31.75 -7.47 -39.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479869483.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.337 kcal (2) G-P(sol) polarization free energy of solvation -31.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds