Wall clock time and date at job start Tue Mar 31 2020 20:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47094 * 2 1 4 4 C 1.53008 * 109.47213 * 240.00031 * 2 1 3 5 5 N 1.46506 * 109.47133 * 120.00235 * 2 1 3 6 6 N 1.28720 * 125.31701 * 359.96790 * 5 2 1 7 7 N 1.28978 * 108.98182 * 180.02562 * 6 5 2 8 8 C 1.34186 * 107.25722 * 0.02562 * 7 6 5 9 9 C 1.48004 * 126.69705 * 179.97438 * 8 7 6 10 10 O 1.21539 * 119.99499 * 180.02562 * 9 8 7 11 11 N 1.34775 * 120.00486 * 0.02562 * 9 8 7 12 12 C 1.46497 * 120.00310 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47338 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.47335 * 179.97438 * 13 12 11 15 15 N 1.46505 * 109.46926 * 180.02562 * 14 13 12 16 16 C 1.36938 * 119.99704 * 269.99524 * 15 14 13 17 17 H 1.08002 * 119.99492 * 140.53695 * 16 15 14 18 18 C 1.38810 * 120.00117 * 320.54009 * 16 15 14 19 19 N 1.31616 * 119.99886 * 340.28455 * 18 16 15 20 20 Si 1.86801 * 119.99835 * 160.28420 * 18 16 15 21 21 H 1.48501 * 109.46852 * 59.99981 * 20 18 16 22 22 H 1.48497 * 109.47146 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47493 * 300.00116 * 20 18 16 24 24 C 1.46500 * 120.00058 * 90.00296 * 15 14 13 25 25 C 1.52994 * 117.49555 * 183.28572 * 24 15 14 26 26 C 1.52992 * 117.49879 * 114.66132 * 24 15 14 27 27 N 1.28862 * 125.31938 * 180.29233 * 5 2 1 28 28 H 1.08990 * 109.47170 * 299.99915 * 1 2 3 29 29 H 1.09007 * 109.47078 * 60.00387 * 1 2 3 30 30 H 1.09005 * 109.47038 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47321 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.46994 * 299.99897 * 3 2 1 33 33 H 1.08996 * 109.46927 * 59.99617 * 3 2 1 34 34 H 1.08996 * 109.46765 * 300.00164 * 4 2 1 35 35 H 1.08997 * 109.47250 * 59.99874 * 4 2 1 36 36 H 1.09000 * 109.46905 * 179.97438 * 4 2 1 37 37 H 0.97006 * 119.99231 * 0.02562 * 11 9 8 38 38 H 1.08991 * 109.47130 * 59.99974 * 12 11 9 39 39 H 1.09006 * 109.46949 * 299.99994 * 12 11 9 40 40 H 1.09003 * 109.46950 * 59.99725 * 13 12 11 41 41 H 1.09003 * 109.47157 * 300.00061 * 13 12 11 42 42 H 1.08998 * 109.46829 * 299.99539 * 14 13 12 43 43 H 1.08991 * 109.47019 * 59.99675 * 14 13 12 44 44 H 0.97005 * 119.99516 * 175.01509 * 19 18 16 45 45 H 1.09005 * 115.54906 * 328.99215 * 24 15 14 46 46 H 1.09000 * 117.50468 * 359.97438 * 25 24 15 47 47 H 1.09007 * 117.50001 * 145.02081 * 25 24 15 48 48 H 1.08999 * 117.50146 * 214.97496 * 26 24 15 49 49 H 1.08998 * 117.50173 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 7 2.0184 -0.6907 1.1962 6 7 1.2762 -1.2161 2.1072 7 7 2.0308 -1.7388 3.0133 8 6 3.3029 -1.5252 2.6437 9 6 4.5189 -1.9463 3.3748 10 8 5.6182 -1.6866 2.9260 11 7 4.4074 -2.6177 4.5381 12 6 5.6110 -3.0339 5.2620 13 6 5.2078 -3.7725 6.5398 14 6 6.4649 -4.2078 7.2955 15 7 6.0788 -4.9156 8.5188 16 6 5.8971 -4.2196 9.6840 17 1 5.0875 -4.4820 10.3490 18 6 6.7534 -3.1770 10.0105 19 7 7.9366 -3.0940 9.4401 20 14 6.2263 -1.8917 11.2594 21 1 5.9505 -2.5506 12.5613 22 1 7.3121 -0.8934 11.4306 23 1 4.9974 -1.2099 10.7796 24 6 5.8872 -6.3678 8.4954 25 6 5.4097 -7.0381 9.7851 26 6 6.8549 -7.2213 9.3173 27 7 3.2580 -0.8620 1.5036 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2075 -2.1393 36 1 3.1301 -0.7208 -1.2495 37 1 3.5299 -2.8252 4.8959 38 1 6.2015 -2.1551 5.5208 39 1 6.2034 -3.6968 4.6311 40 1 4.6175 -4.6514 6.2805 41 1 4.6153 -3.1100 7.1708 42 1 7.0570 -4.8705 6.6644 43 1 7.0556 -3.3292 7.5546 44 1 8.5056 -2.3277 9.6130 45 1 5.5299 -6.7797 7.5515 46 1 5.2385 -6.3988 10.6511 47 1 4.7380 -7.8914 9.6900 48 1 7.1340 -8.1950 8.9146 49 1 7.6344 -6.7025 9.8752 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479869483.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:15 Heat of formation + Delta-G solvation = 112.652333 kcal Electronic energy + Delta-G solvation = -28565.423465 eV Core-core repulsion = 24566.554637 eV Total energy + Delta-G solvation = -3998.868828 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -45.63482 -40.85510 -38.83083 -38.63171 -36.81744 -35.31184 -34.70224 -33.84979 -33.16547 -31.15131 -28.66457 -28.54708 -27.64724 -26.30609 -25.64581 -24.74003 -23.01883 -22.50622 -22.23978 -21.67207 -21.37694 -19.14085 -18.59374 -18.25397 -17.73927 -17.33427 -17.07549 -16.67221 -16.43432 -15.79298 -15.43906 -15.30295 -15.28424 -15.08741 -14.95216 -14.37932 -14.09066 -13.90265 -13.63969 -13.49669 -13.30576 -13.23856 -13.23074 -12.85731 -12.75944 -12.65447 -12.60691 -12.46003 -12.39755 -12.28474 -12.13828 -12.12940 -12.04047 -11.88477 -11.62485 -11.50406 -11.37804 -11.25154 -10.86000 -10.45174 -10.29737 -8.46536 -7.75971 -5.48058 -0.19899 0.21717 0.61662 1.45803 1.48443 1.54311 1.64830 1.83542 2.50267 2.76008 2.92912 3.18765 3.44134 3.47404 3.52621 3.56047 3.62961 3.94625 4.19009 4.22893 4.28908 4.36051 4.40353 4.49076 4.51746 4.56970 4.58170 4.59616 4.62869 4.72039 4.72327 4.78516 4.86343 4.97939 5.01351 5.10171 5.10216 5.11723 5.16119 5.21385 5.25357 5.39879 5.50036 5.59043 5.70934 5.85871 6.18581 6.49888 6.79120 7.00610 7.19338 7.87703 8.39628 9.12854 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.016934 B = 0.002103 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.034047 B =13308.684474 C =13890.144831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.158 3.842 3 C -0.158 4.158 4 C -0.157 4.157 5 N -0.109 5.109 6 N -0.057 5.057 7 N -0.267 5.267 8 C 0.114 3.886 9 C 0.614 3.386 10 O -0.546 6.546 11 N -0.688 5.688 12 C 0.133 3.867 13 C -0.125 4.125 14 C 0.155 3.845 15 N -0.568 5.568 16 C -0.259 4.259 17 H 0.058 0.942 18 C -0.032 4.032 19 N -0.913 5.913 20 Si 0.950 3.050 21 H -0.278 1.278 22 H -0.296 1.296 23 H -0.277 1.277 24 C 0.103 3.897 25 C -0.182 4.182 26 C -0.222 4.222 27 N -0.257 5.257 28 H 0.069 0.931 29 H 0.128 0.872 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.130 0.870 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.130 0.870 36 H 0.062 0.938 37 H 0.419 0.581 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.035 0.965 43 H 0.062 0.938 44 H 0.250 0.750 45 H 0.115 0.885 46 H 0.073 0.927 47 H 0.111 0.889 48 H 0.100 0.900 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.811 5.592 -23.200 29.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.080 3.920 3 C -0.217 4.217 4 C -0.216 4.216 5 N -0.026 5.026 6 N -0.049 5.049 7 N -0.142 5.142 8 C -0.169 4.169 9 C 0.395 3.605 10 O -0.421 6.421 11 N -0.339 5.339 12 C 0.010 3.990 13 C -0.165 4.165 14 C 0.028 3.972 15 N -0.285 5.285 16 C -0.389 4.389 17 H 0.076 0.924 18 C -0.230 4.230 19 N -0.556 5.556 20 Si 0.778 3.222 21 H -0.203 1.203 22 H -0.222 1.222 23 H -0.203 1.203 24 C -0.005 4.005 25 C -0.220 4.220 26 C -0.263 4.263 27 N -0.111 5.111 28 H 0.088 0.912 29 H 0.146 0.854 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.149 0.851 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.148 0.852 36 H 0.082 0.918 37 H 0.256 0.744 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.053 0.947 43 H 0.080 0.920 44 H 0.059 0.941 45 H 0.133 0.867 46 H 0.091 0.909 47 H 0.129 0.871 48 H 0.118 0.882 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.460 5.949 -23.560 29.350 hybrid contribution 0.496 0.580 1.440 1.630 sum -15.965 6.529 -22.120 28.050 Atomic orbital electron populations 1.22185 0.87830 1.04844 1.05918 1.22252 0.98149 0.93352 0.78234 1.22318 1.02523 0.91113 1.05702 1.22313 1.02526 1.01198 0.95517 1.51354 0.99998 1.32820 1.18379 1.78804 1.21452 1.09001 0.95626 1.76115 0.99800 1.18194 1.20051 1.25114 0.94420 1.03318 0.94098 1.16253 0.84574 0.78647 0.81066 1.90830 1.26614 1.56502 1.68130 1.45738 1.12072 1.55186 1.20943 1.21378 0.85787 0.99090 0.92769 1.22150 1.00725 0.99783 0.93867 1.20662 0.93609 0.97376 0.85539 1.43535 1.79020 1.00185 1.05772 1.19124 1.07107 1.13243 0.99431 0.92450 1.25859 0.93904 1.03415 0.99860 1.70172 1.08049 1.29463 1.47921 0.85635 0.77231 0.79490 0.79870 1.20328 1.22187 1.20252 1.21570 1.00897 0.83676 0.94344 1.23016 0.96983 1.02589 0.99377 1.23257 0.92946 1.01944 1.08104 1.74950 1.04091 1.17051 1.14996 0.91229 0.85380 0.91054 0.91866 0.85143 0.92056 0.91842 0.85178 0.91844 0.74351 0.92321 0.90597 0.90900 0.92614 0.94666 0.91966 0.94059 0.86731 0.90860 0.87113 0.88175 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 7.90 71.98 0.57 -0.32 16 2 C 0.16 1.70 1.30 3.61 0.00 1.70 16 3 C -0.16 -1.30 8.66 71.98 0.62 -0.68 16 4 C -0.16 -1.21 8.67 71.98 0.62 -0.59 16 5 N -0.11 -2.28 3.72 -152.24 -0.57 -2.84 16 6 N -0.06 -1.36 12.21 37.02 0.45 -0.91 16 7 N -0.27 -7.44 12.26 -52.37 -0.64 -8.09 16 8 C 0.11 3.40 8.14 137.15 1.12 4.52 16 9 C 0.61 20.11 7.84 86.83 0.68 20.79 16 10 O -0.55 -21.24 17.10 -3.84 -0.07 -21.31 16 11 N -0.69 -20.32 5.55 -465.83 -2.59 -22.91 16 12 C 0.13 4.32 5.67 86.38 0.49 4.81 16 13 C -0.13 -4.41 5.65 30.59 0.17 -4.24 16 14 C 0.15 6.83 5.33 86.38 0.46 7.29 16 15 N -0.57 -27.09 2.75 -678.05 -1.86 -28.95 16 16 C -0.26 -13.68 8.47 84.03 0.71 -12.97 16 17 H 0.06 3.05 6.75 -2.91 -0.02 3.03 16 18 C -0.03 -1.77 4.98 84.86 0.42 -1.35 16 19 N -0.91 -52.75 11.50 21.65 0.25 -52.50 16 20 Si 0.95 44.35 29.60 68.60 2.03 46.38 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 22 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 24 C 0.10 4.19 6.56 44.99 0.30 4.49 16 25 C -0.18 -6.82 9.80 30.59 0.30 -6.52 16 26 C -0.22 -8.85 10.36 30.59 0.32 -8.54 16 27 N -0.26 -6.98 11.85 -52.32 -0.62 -7.60 16 28 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.13 -0.17 8.14 -2.38 -0.02 -0.19 16 30 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.13 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.13 0.02 8.14 -2.39 -0.02 0.00 16 36 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.42 10.89 8.22 -92.70 -0.76 10.13 16 38 H 0.06 2.10 8.14 -2.39 -0.02 2.09 16 39 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 40 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.03 1.48 8.07 -2.39 -0.02 1.46 16 43 H 0.06 3.22 5.59 -2.39 -0.01 3.21 16 44 H 0.25 14.14 8.32 -92.70 -0.77 13.37 16 45 H 0.12 3.98 8.14 -2.38 -0.02 3.96 16 46 H 0.07 3.11 6.46 -2.39 -0.02 3.10 16 47 H 0.11 3.33 8.14 -2.38 -0.02 3.31 16 48 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 49 H 0.05 2.50 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -71.04 409.00 3.36 -67.68 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.19 Total: 22.65 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 6.79 Total: 8.40 kcal Atomic # 7 Polarization: -118.22 SS G_CDS: -5.58 Total: -123.80 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.07 Total: -21.31 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -71.04 3.36 -67.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479869483.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.328 kcal (2) G-P(sol) polarization free energy of solvation -71.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds