Wall clock time and date at job start Tue Mar 31 2020 19:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47274 * 2 1 4 4 C 1.53003 * 109.47301 * 240.00227 * 2 1 3 5 5 N 1.46496 * 109.47067 * 120.00257 * 2 1 3 6 6 N 1.28775 * 125.45095 * 0.02562 * 5 2 1 7 7 N 1.29002 * 108.73083 * 179.97438 * 6 5 2 8 8 C 1.33320 * 107.34980 * 359.97438 * 7 6 5 9 9 C 1.50695 * 126.54958 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47421 * 90.02069 * 9 8 7 11 11 O 1.21283 * 119.99735 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00330 * 180.02562 * 10 9 8 13 13 C 1.47024 * 125.64363 * 0.02562 * 12 10 9 14 14 C 1.54324 * 107.26681 * 178.89761 * 13 12 10 15 15 C 1.55159 * 102.94333 * 337.80338 * 14 13 12 16 16 H 1.08996 * 111.00708 * 277.39464 * 15 14 13 17 17 C 1.53004 * 111.00328 * 153.57938 * 15 14 13 18 18 N 1.46499 * 109.47198 * 66.45684 * 17 15 14 19 19 C 1.36939 * 119.99933 * 180.27608 * 18 17 15 20 20 H 1.08001 * 119.99700 * 359.72658 * 19 18 17 21 21 C 1.38810 * 120.00095 * 179.71972 * 19 18 17 22 22 N 1.31624 * 119.99740 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00044 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47201 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47080 * 120.00466 * 23 21 19 26 26 H 1.48506 * 109.47018 * 240.00565 * 23 21 19 27 27 C 1.47419 * 125.65001 * 179.97438 * 12 10 9 28 28 N 1.28885 * 125.44806 * 180.31263 * 5 2 1 29 29 H 1.08997 * 109.46998 * 300.00057 * 1 2 3 30 30 H 1.09001 * 109.47157 * 59.99826 * 1 2 3 31 31 H 1.09001 * 109.46928 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47050 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47170 * 300.00166 * 3 2 1 34 34 H 1.09007 * 109.46622 * 60.00007 * 3 2 1 35 35 H 1.08998 * 109.46987 * 300.00004 * 4 2 1 36 36 H 1.09001 * 109.47059 * 59.99886 * 4 2 1 37 37 H 1.09003 * 109.47099 * 179.97438 * 4 2 1 38 38 H 1.09011 * 109.46943 * 330.02650 * 9 8 7 39 39 H 1.08997 * 109.47542 * 210.02543 * 9 8 7 40 40 H 1.09003 * 109.88406 * 59.48039 * 13 12 10 41 41 H 1.08996 * 110.01591 * 298.38434 * 13 12 10 42 42 H 1.09004 * 110.71897 * 219.44651 * 14 13 12 43 43 H 1.08996 * 110.72252 * 96.17539 * 14 13 12 44 44 H 1.09009 * 109.46730 * 306.45471 * 17 15 14 45 45 H 1.08998 * 109.46846 * 186.46016 * 17 15 14 46 46 H 0.97001 * 119.99790 * 359.97438 * 18 17 15 47 47 H 0.96998 * 119.99409 * 179.97438 * 22 21 19 48 48 H 1.09005 * 110.36514 * 85.33365 * 27 12 10 49 49 H 1.08998 * 110.36722 * 323.01563 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1961 6 7 1.2782 -1.2180 2.1085 7 7 2.0399 -1.7390 3.0099 8 6 3.3017 -1.5239 2.6369 9 6 4.5420 -1.9528 3.3776 10 6 4.9552 -3.3256 2.9131 11 8 4.3065 -3.8991 2.0637 12 7 6.0454 -3.9162 3.4414 13 6 6.9180 -3.3372 4.4734 14 6 8.0133 -4.3790 4.7842 15 6 7.3677 -5.7112 4.3196 16 1 6.7089 -6.1151 5.0882 17 6 8.4381 -6.7317 3.9272 18 7 9.2015 -7.1201 5.1157 19 6 10.2235 -8.0252 5.0074 20 1 10.4637 -8.4560 4.0466 21 6 10.9506 -8.3889 6.1325 22 7 10.6575 -7.8642 7.3035 23 14 12.3441 -9.6241 5.9849 24 1 12.4700 -10.0618 4.5715 25 1 13.6147 -8.9914 6.4217 26 1 12.0559 -10.8005 6.8441 27 6 6.5598 -5.2498 3.0810 28 7 3.2573 -0.8631 1.5062 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9563 0.8901 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2073 -2.1393 37 1 3.1301 -0.7208 -1.2495 38 1 4.3356 -1.9783 4.4477 39 1 5.3467 -1.2448 3.1796 40 1 6.3395 -3.1278 5.3732 41 1 7.3741 -2.4188 4.1040 42 1 8.2274 -4.4063 5.8527 43 1 8.9181 -4.1692 4.2138 44 1 9.1103 -6.2887 3.1922 45 1 7.9603 -7.6125 3.4983 46 1 8.9859 -6.7329 5.9785 47 1 11.1654 -8.1186 8.0897 48 1 7.2090 -5.1828 2.2079 49 1 5.7346 -5.9357 2.8893 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480644556.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:31 Heat of formation + Delta-G solvation = 99.469280 kcal Electronic energy + Delta-G solvation = -28610.770918 eV Core-core repulsion = 24611.330430 eV Total energy + Delta-G solvation = -3999.440488 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.51446 -40.08692 -38.12360 -37.61390 -34.70092 -33.76420 -33.39815 -32.27206 -30.45829 -29.71230 -28.84425 -28.11894 -27.97126 -25.42233 -24.78256 -23.41534 -22.49965 -22.23606 -20.92692 -20.03165 -19.30515 -17.70440 -17.38357 -17.13070 -16.84793 -16.41608 -15.54351 -15.09627 -14.82816 -14.66565 -14.46825 -14.30791 -13.88616 -13.75651 -13.56422 -13.42550 -13.11071 -13.06950 -12.91217 -12.84579 -12.70473 -12.47192 -12.41974 -12.29493 -12.07848 -12.03210 -11.64424 -11.60348 -11.19653 -11.06558 -10.99577 -10.88105 -10.67919 -10.53195 -10.43122 -10.37954 -10.03237 -9.84911 -9.70095 -8.89460 -8.66077 -6.93774 -5.78332 -3.06824 1.09557 1.59918 1.95800 2.52759 2.94124 3.42863 3.48910 3.50870 3.54670 3.83770 3.97106 4.07461 4.30534 4.35721 4.57540 4.73799 4.80633 4.85198 4.88383 4.91599 4.97100 5.00773 5.04207 5.08889 5.09317 5.22608 5.31247 5.37229 5.39931 5.49074 5.52081 5.55867 5.57331 5.64405 5.73819 5.89244 6.02151 6.03542 6.05029 6.11769 6.19207 6.38655 6.43471 6.71440 6.83753 7.44986 7.69857 8.05316 8.24247 8.40693 9.52291 10.09141 10.44136 11.44614 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.038116 B = 0.001720 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.429090 B =16275.852565 C =16482.134094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.179 3.821 3 C -0.158 4.158 4 C -0.159 4.159 5 N -0.130 5.130 6 N -0.062 5.062 7 N -0.276 5.276 8 C 0.186 3.814 9 C -0.039 4.039 10 C 0.536 3.464 11 O -0.537 6.537 12 N -0.614 5.614 13 C 0.095 3.905 14 C -0.120 4.120 15 C -0.106 4.106 16 H 0.085 0.915 17 C 0.164 3.836 18 N -0.731 5.731 19 C -0.239 4.239 20 H 0.071 0.929 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.114 3.886 28 N -0.295 5.295 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.023 0.977 45 H 0.022 0.978 46 H 0.384 0.616 47 H 0.254 0.746 48 H 0.071 0.929 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.429 22.527 -14.208 32.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.098 3.902 3 C -0.216 4.216 4 C -0.218 4.218 5 N -0.044 5.044 6 N -0.055 5.055 7 N -0.147 5.147 8 C -0.097 4.097 9 C -0.082 4.082 10 C 0.322 3.678 11 O -0.414 6.414 12 N -0.348 5.348 13 C -0.028 4.028 14 C -0.158 4.158 15 C -0.125 4.125 16 H 0.103 0.897 17 C 0.036 3.964 18 N -0.375 5.375 19 C -0.370 4.370 20 H 0.089 0.911 21 C -0.210 4.210 22 N -0.582 5.582 23 Si 0.738 3.262 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.008 4.008 28 N -0.145 5.145 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.040 0.960 45 H 0.040 0.960 46 H 0.218 0.782 47 H 0.064 0.936 48 H 0.089 0.911 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.401 22.242 -14.927 33.075 hybrid contribution 1.325 -0.653 0.465 1.548 sum -18.077 21.589 -14.462 31.655 Atomic orbital electron populations 1.22088 0.90099 1.04699 1.04193 1.21381 0.96434 0.92655 0.79750 1.22228 1.03312 0.92100 1.03965 1.22236 1.03394 1.01223 0.94904 1.50415 1.01114 1.34843 1.18024 1.78892 1.21944 1.09143 0.95507 1.75816 1.00720 1.17962 1.20174 1.24589 0.94828 0.98480 0.91782 1.19826 0.91883 0.95675 1.00840 1.19716 0.79462 0.86818 0.81773 1.90736 1.52952 1.65459 1.32238 1.48456 1.26542 1.19145 1.40663 1.22233 0.92269 0.97556 0.90751 1.22639 0.96923 0.92991 1.03253 1.22573 0.97505 0.95870 0.96585 0.89652 1.20548 0.90929 0.93796 0.91121 1.42304 1.38158 1.51645 1.05391 1.19278 1.07307 1.16200 0.94216 0.91105 1.24734 1.00087 1.00691 0.95481 1.69667 1.43032 1.47031 0.98465 0.86116 0.82023 0.80834 0.77212 1.20566 1.21887 1.21875 1.22272 0.97824 0.82877 0.97841 1.74528 1.03308 1.20519 1.16194 0.90616 0.89279 0.90544 0.90405 0.89186 0.91435 0.91264 0.89225 0.90389 0.85601 0.86001 0.91129 0.91253 0.89324 0.90118 0.95970 0.96002 0.78218 0.93574 0.91105 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 7.91 37.16 0.29 -0.46 16 2 C 0.18 1.20 1.30 -131.82 -0.17 1.03 16 3 C -0.16 -0.74 8.66 37.16 0.32 -0.42 16 4 C -0.16 -0.95 8.67 37.16 0.32 -0.63 16 5 N -0.13 -1.45 3.73 0.48 0.00 -1.45 16 6 N -0.06 -0.82 12.24 60.35 0.74 -0.08 16 7 N -0.28 -4.04 12.50 32.45 0.41 -3.63 16 8 C 0.19 2.46 6.86 -156.62 -1.07 1.38 16 9 C -0.04 -0.41 5.52 -29.04 -0.16 -0.57 16 10 C 0.54 7.46 7.84 -10.98 -0.09 7.38 16 11 O -0.54 -9.76 16.29 5.56 0.09 -9.67 16 12 N -0.61 -7.91 3.33 -170.52 -0.57 -8.48 16 13 C 0.09 0.98 6.49 -3.06 -0.02 0.96 16 14 C -0.12 -1.59 6.13 -24.90 -0.15 -1.74 16 15 C -0.11 -1.61 3.10 -88.47 -0.27 -1.89 16 16 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 17 C 0.16 3.16 5.71 -4.04 -0.02 3.13 16 18 N -0.73 -17.85 5.45 -59.90 -0.33 -18.18 16 19 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -27.72 13.06 55.49 0.72 -27.00 16 23 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 C 0.11 1.62 6.38 -2.53 -0.02 1.61 16 28 N -0.30 -3.70 11.83 32.47 0.38 -3.32 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.13 1.03 8.14 -51.92 -0.42 0.61 16 39 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.08 1.11 8.01 -51.93 -0.42 0.70 16 44 H 0.02 0.43 8.11 -51.92 -0.42 0.01 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.38 9.76 7.53 -40.82 -0.31 9.45 16 47 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 48 H 0.07 0.99 8.04 -51.93 -0.42 0.57 16 49 H 0.08 1.17 8.04 -51.93 -0.42 0.75 16 LS Contribution 405.48 15.07 6.11 6.11 Total: -1.00 -36.03 405.48 -7.04 -43.07 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -8.29 Total: 2.88 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -1.29 Total: 2.55 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: 1.36 Total: -62.13 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.03 -7.04 -43.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480644556.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.542 kcal (2) G-P(sol) polarization free energy of solvation -36.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds