Wall clock time and date at job start Tue Mar 31 2020 19:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47274 * 2 1 4 4 C 1.53003 * 109.47301 * 240.00227 * 2 1 3 5 5 N 1.46496 * 109.47067 * 120.00257 * 2 1 3 6 6 N 1.28775 * 125.45095 * 0.02562 * 5 2 1 7 7 N 1.29002 * 108.73083 * 179.97438 * 6 5 2 8 8 C 1.33320 * 107.34980 * 359.97438 * 7 6 5 9 9 C 1.50695 * 126.54958 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47421 * 90.02069 * 9 8 7 11 11 O 1.21283 * 119.99735 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00330 * 180.02562 * 10 9 8 13 13 C 1.47024 * 125.64363 * 0.02562 * 12 10 9 14 14 C 1.54324 * 107.26681 * 178.89761 * 13 12 10 15 15 C 1.55159 * 102.94333 * 337.80338 * 14 13 12 16 16 H 1.08996 * 111.00708 * 277.39464 * 15 14 13 17 17 C 1.53004 * 111.00328 * 153.57938 * 15 14 13 18 18 N 1.46499 * 109.47198 * 66.45684 * 17 15 14 19 19 C 1.36939 * 119.99933 * 180.27608 * 18 17 15 20 20 H 1.08001 * 119.99700 * 359.72658 * 19 18 17 21 21 C 1.38810 * 120.00095 * 179.71972 * 19 18 17 22 22 N 1.31624 * 119.99740 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00044 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47201 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47080 * 120.00466 * 23 21 19 26 26 H 1.48506 * 109.47018 * 240.00565 * 23 21 19 27 27 C 1.47419 * 125.65001 * 179.97438 * 12 10 9 28 28 N 1.28885 * 125.44806 * 180.31263 * 5 2 1 29 29 H 1.08997 * 109.46998 * 300.00057 * 1 2 3 30 30 H 1.09001 * 109.47157 * 59.99826 * 1 2 3 31 31 H 1.09001 * 109.46928 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47050 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47170 * 300.00166 * 3 2 1 34 34 H 1.09007 * 109.46622 * 60.00007 * 3 2 1 35 35 H 1.08998 * 109.46987 * 300.00004 * 4 2 1 36 36 H 1.09001 * 109.47059 * 59.99886 * 4 2 1 37 37 H 1.09003 * 109.47099 * 179.97438 * 4 2 1 38 38 H 1.09011 * 109.46943 * 330.02650 * 9 8 7 39 39 H 1.08997 * 109.47542 * 210.02543 * 9 8 7 40 40 H 1.09003 * 109.88406 * 59.48039 * 13 12 10 41 41 H 1.08996 * 110.01591 * 298.38434 * 13 12 10 42 42 H 1.09004 * 110.71897 * 219.44651 * 14 13 12 43 43 H 1.08996 * 110.72252 * 96.17539 * 14 13 12 44 44 H 1.09009 * 109.46730 * 306.45471 * 17 15 14 45 45 H 1.08998 * 109.46846 * 186.46016 * 17 15 14 46 46 H 0.97001 * 119.99790 * 359.97438 * 18 17 15 47 47 H 0.96998 * 119.99409 * 179.97438 * 22 21 19 48 48 H 1.09005 * 110.36514 * 85.33365 * 27 12 10 49 49 H 1.08998 * 110.36722 * 323.01563 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1961 6 7 1.2782 -1.2180 2.1085 7 7 2.0399 -1.7390 3.0099 8 6 3.3017 -1.5239 2.6369 9 6 4.5420 -1.9528 3.3776 10 6 4.9552 -3.3256 2.9131 11 8 4.3065 -3.8991 2.0637 12 7 6.0454 -3.9162 3.4414 13 6 6.9180 -3.3372 4.4734 14 6 8.0133 -4.3790 4.7842 15 6 7.3677 -5.7112 4.3196 16 1 6.7089 -6.1151 5.0882 17 6 8.4381 -6.7317 3.9272 18 7 9.2015 -7.1201 5.1157 19 6 10.2235 -8.0252 5.0074 20 1 10.4637 -8.4560 4.0466 21 6 10.9506 -8.3889 6.1325 22 7 10.6575 -7.8642 7.3035 23 14 12.3441 -9.6241 5.9849 24 1 12.4700 -10.0618 4.5715 25 1 13.6147 -8.9914 6.4217 26 1 12.0559 -10.8005 6.8441 27 6 6.5598 -5.2498 3.0810 28 7 3.2573 -0.8631 1.5062 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9563 0.8901 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2073 -2.1393 37 1 3.1301 -0.7208 -1.2495 38 1 4.3356 -1.9783 4.4477 39 1 5.3467 -1.2448 3.1796 40 1 6.3395 -3.1278 5.3732 41 1 7.3741 -2.4188 4.1040 42 1 8.2274 -4.4063 5.8527 43 1 8.9181 -4.1692 4.2138 44 1 9.1103 -6.2887 3.1922 45 1 7.9603 -7.6125 3.4983 46 1 8.9859 -6.7329 5.9785 47 1 11.1654 -8.1186 8.0897 48 1 7.2090 -5.1828 2.2079 49 1 5.7346 -5.9357 2.8893 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480644556.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:29 Heat of formation + Delta-G solvation = 74.248321 kcal Electronic energy + Delta-G solvation = -28611.864581 eV Core-core repulsion = 24611.330430 eV Total energy + Delta-G solvation = -4000.534151 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.40970 -41.17942 -39.00572 -38.52595 -36.43527 -34.70645 -34.27013 -33.85555 -32.01135 -30.66619 -30.04407 -28.52953 -28.44264 -27.03640 -25.64312 -24.78751 -23.93754 -23.29840 -21.64375 -21.33877 -20.31654 -19.15259 -18.61003 -18.02338 -17.85097 -17.54499 -16.62167 -16.53046 -15.95481 -15.57746 -15.32147 -15.18294 -15.13392 -14.96850 -14.80464 -14.66761 -14.20634 -13.94320 -13.86808 -13.76163 -13.44399 -13.23796 -13.20664 -13.01144 -12.93297 -12.88083 -12.86012 -12.75569 -12.57230 -12.18340 -12.17125 -12.09283 -11.96702 -11.88262 -11.76382 -11.66393 -11.57381 -11.39946 -10.92729 -10.89590 -9.71543 -8.97404 -7.93806 -5.21766 0.19644 0.89661 1.01801 1.48825 1.49312 1.49834 1.59642 1.93885 2.57388 2.77282 3.13775 3.34702 3.40869 3.51475 3.57847 3.65790 3.67368 3.71086 3.91606 4.16245 4.30643 4.33909 4.38035 4.44905 4.46061 4.49844 4.51995 4.57921 4.59812 4.62372 4.67186 4.71126 4.72306 4.75832 4.83619 4.88194 5.01099 5.03751 5.09872 5.10616 5.21075 5.24347 5.29399 5.34245 5.44063 5.52388 6.28940 6.43094 7.00075 7.31272 7.36253 8.11029 8.35803 9.29661 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.038116 B = 0.001720 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.429090 B =16275.852565 C =16482.134094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.161 3.839 3 C -0.151 4.151 4 C -0.155 4.155 5 N -0.119 5.119 6 N -0.078 5.078 7 N -0.310 5.310 8 C 0.174 3.826 9 C -0.033 4.033 10 C 0.534 3.466 11 O -0.588 6.588 12 N -0.611 5.611 13 C 0.099 3.901 14 C -0.117 4.117 15 C -0.097 4.097 16 H 0.077 0.923 17 C 0.164 3.836 18 N -0.740 5.740 19 C -0.245 4.245 20 H 0.074 0.926 21 C -0.073 4.073 22 N -0.966 5.966 23 Si 0.971 3.029 24 H -0.268 1.268 25 H -0.292 1.292 26 H -0.295 1.295 27 C 0.120 3.880 28 N -0.304 5.304 29 H 0.070 0.930 30 H 0.125 0.875 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.124 0.876 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.127 0.873 37 H 0.063 0.937 38 H 0.152 0.848 39 H 0.156 0.844 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.028 0.972 45 H 0.016 0.984 46 H 0.377 0.623 47 H 0.251 0.749 48 H 0.074 0.926 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.416 24.655 -15.358 34.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.082 3.918 3 C -0.210 4.210 4 C -0.214 4.214 5 N -0.035 5.035 6 N -0.070 5.070 7 N -0.180 5.180 8 C -0.110 4.110 9 C -0.075 4.075 10 C 0.323 3.677 11 O -0.469 6.469 12 N -0.344 5.344 13 C -0.022 4.022 14 C -0.155 4.155 15 C -0.117 4.117 16 H 0.095 0.905 17 C 0.037 3.963 18 N -0.383 5.383 19 C -0.377 4.377 20 H 0.092 0.908 21 C -0.265 4.265 22 N -0.617 5.617 23 Si 0.800 3.200 24 H -0.193 1.193 25 H -0.219 1.219 26 H -0.222 1.222 27 C -0.003 4.003 28 N -0.155 5.155 29 H 0.089 0.911 30 H 0.143 0.857 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.143 0.857 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.145 0.855 37 H 0.082 0.918 38 H 0.170 0.830 39 H 0.174 0.826 40 H 0.113 0.887 41 H 0.121 0.879 42 H 0.101 0.899 43 H 0.094 0.906 44 H 0.046 0.954 45 H 0.034 0.966 46 H 0.209 0.791 47 H 0.060 0.940 48 H 0.092 0.908 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.394 24.388 -16.091 35.069 hybrid contribution 1.272 -1.301 0.695 1.948 sum -18.122 23.087 -15.396 33.143 Atomic orbital electron populations 1.22136 0.88718 1.04147 1.05721 1.22016 0.97655 0.93608 0.78495 1.22246 1.02658 0.90600 1.05461 1.22263 1.02449 1.00587 0.96077 1.50969 1.00649 1.33588 1.18271 1.78806 1.22273 1.09837 0.96085 1.75761 1.01620 1.19202 1.21387 1.25089 0.95244 0.98488 0.92129 1.19994 0.91851 0.93838 1.01800 1.20299 0.78786 0.87746 0.80917 1.90716 1.54547 1.66970 1.34651 1.48484 1.26587 1.18460 1.40877 1.22386 0.91287 0.97375 0.91192 1.22582 0.97681 0.92522 1.02699 1.22350 0.96432 0.96010 0.96913 0.90495 1.20646 0.91509 0.94649 0.89494 1.42457 1.38091 1.51206 1.06571 1.19652 1.07627 1.16144 0.94258 0.90844 1.25507 1.02758 1.02922 0.95334 1.69805 1.44280 1.48626 0.98974 0.85111 0.78983 0.78351 0.77530 1.19298 1.21879 1.22216 1.22075 0.97198 0.83746 0.97289 1.74497 1.04063 1.20817 1.16105 0.91127 0.85659 0.92124 0.91387 0.85732 0.91847 0.93207 0.85458 0.91804 0.83005 0.82594 0.88682 0.87925 0.89936 0.90584 0.95446 0.96619 0.79055 0.93995 0.90798 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 7.91 71.98 0.57 -0.69 16 2 C 0.16 1.96 1.30 3.61 0.00 1.97 16 3 C -0.15 -1.09 8.66 71.98 0.62 -0.47 16 4 C -0.16 -1.67 8.67 71.98 0.62 -1.04 16 5 N -0.12 -2.61 3.73 -152.39 -0.57 -3.18 16 6 N -0.08 -2.08 12.24 37.02 0.45 -1.63 16 7 N -0.31 -9.12 12.50 -51.26 -0.64 -9.76 16 8 C 0.17 4.46 6.86 138.55 0.95 5.41 16 9 C -0.03 -0.61 5.52 29.10 0.16 -0.45 16 10 C 0.53 14.25 7.84 87.66 0.69 14.93 16 11 O -0.59 -21.61 16.29 -3.04 -0.05 -21.66 16 12 N -0.61 -14.70 3.33 -811.79 -2.70 -17.40 16 13 C 0.10 1.75 6.49 86.73 0.56 2.31 16 14 C -0.12 -2.91 6.13 31.78 0.19 -2.72 16 15 C -0.10 -2.94 3.10 -9.40 -0.03 -2.97 16 16 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 17 C 0.16 6.31 5.71 86.38 0.49 6.80 16 18 N -0.74 -36.39 5.45 -343.44 -1.87 -38.26 16 19 C -0.24 -13.50 9.99 84.03 0.84 -12.66 16 20 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 21 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 22 N -0.97 -57.90 13.06 21.65 0.28 -57.62 16 23 Si 0.97 45.72 29.55 68.60 2.03 47.75 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 25 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 26 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 27 C 0.12 3.35 6.38 86.86 0.55 3.91 16 28 N -0.30 -7.45 11.83 -51.20 -0.61 -8.06 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 34 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 35 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 38 H 0.15 2.02 8.14 -2.38 -0.02 2.00 16 39 H 0.16 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.08 1.98 8.01 -2.39 -0.02 1.96 16 44 H 0.03 1.04 8.11 -2.38 -0.02 1.02 16 45 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.38 19.40 7.53 -92.71 -0.70 18.70 16 47 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 48 H 0.07 2.02 8.04 -2.38 -0.02 2.00 16 49 H 0.06 1.95 8.04 -2.39 -0.02 1.94 16 Total: -1.00 -80.49 405.48 3.27 -77.22 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 0.24 Total: 21.91 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 6.70 Total: 10.69 kcal Atomic # 7 Polarization: -130.26 SS G_CDS: -5.65 Total: -135.91 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.05 Total: -21.66 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -80.49 3.27 -77.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480644556.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.472 kcal (2) G-P(sol) polarization free energy of solvation -80.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds