Wall clock time and date at job start Tue Mar 31 2020 19:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52990 * 109.47259 * 2 1 4 4 C 1.53005 * 109.46751 * 240.00022 * 2 1 3 5 5 N 1.46497 * 109.47151 * 120.00410 * 2 1 3 6 6 N 1.28780 * 125.44814 * 0.02562 * 5 2 1 7 7 N 1.28997 * 108.72929 * 179.97438 * 6 5 2 8 8 C 1.33320 * 107.35176 * 359.97438 * 7 6 5 9 9 C 1.50696 * 126.55049 * 180.02562 * 8 7 6 10 10 C 1.50694 * 109.47214 * 90.02140 * 9 8 7 11 11 O 1.21280 * 120.00071 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00246 * 179.97438 * 10 9 8 13 13 C 1.47022 * 125.64725 * 359.96409 * 12 10 9 14 14 C 1.54326 * 107.27307 * 181.09668 * 13 12 10 15 15 C 1.55157 * 102.94348 * 22.18831 * 14 13 12 16 16 H 1.09002 * 111.03349 * 82.58619 * 15 14 13 17 17 C 1.52993 * 111.00367 * 206.42616 * 15 14 13 18 18 N 1.46496 * 109.47551 * 287.19545 * 17 15 14 19 19 C 1.36934 * 120.00548 * 179.97438 * 18 17 15 20 20 H 1.08004 * 119.99288 * 0.02562 * 19 18 17 21 21 C 1.38805 * 120.00389 * 180.02562 * 19 18 17 22 22 N 1.31624 * 120.00257 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 270.00277 * 23 21 19 25 25 H 1.48501 * 109.47062 * 30.00228 * 23 21 19 26 26 H 1.48499 * 109.46981 * 150.00382 * 23 21 19 27 27 C 1.47420 * 125.65158 * 180.02562 * 12 10 9 28 28 N 1.28880 * 125.45034 * 180.30645 * 5 2 1 29 29 H 1.08995 * 109.46953 * 299.99953 * 1 2 3 30 30 H 1.08998 * 109.47136 * 59.99999 * 1 2 3 31 31 H 1.09002 * 109.46965 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47606 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47459 * 300.00186 * 3 2 1 34 34 H 1.09006 * 109.46729 * 59.99828 * 3 2 1 35 35 H 1.08993 * 109.47450 * 300.00003 * 4 2 1 36 36 H 1.09004 * 109.47004 * 60.00403 * 4 2 1 37 37 H 1.09004 * 109.46795 * 179.97438 * 4 2 1 38 38 H 1.09006 * 109.46949 * 330.02070 * 9 8 7 39 39 H 1.09001 * 109.47400 * 210.02668 * 9 8 7 40 40 H 1.09007 * 109.88245 * 300.50766 * 13 12 10 41 41 H 1.09000 * 109.88559 * 61.51645 * 13 12 10 42 42 H 1.08999 * 110.71472 * 263.82749 * 14 13 12 43 43 H 1.08993 * 110.72323 * 140.56002 * 14 13 12 44 44 H 1.09004 * 109.46862 * 167.19744 * 17 15 14 45 45 H 1.09004 * 109.46998 * 47.20222 * 17 15 14 46 46 H 0.96999 * 119.99694 * 0.02562 * 18 17 15 47 47 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 48 48 H 1.09002 * 110.36973 * 37.00074 * 27 12 10 49 49 H 1.08998 * 110.46174 * 274.72582 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0184 -0.6907 1.1961 6 7 1.2783 -1.2181 2.1085 7 7 2.0399 -1.7390 3.0099 8 6 3.3017 -1.5240 2.6369 9 6 4.5420 -1.9530 3.3776 10 6 4.9551 -3.3257 2.9130 11 8 4.3065 -3.8991 2.0636 12 7 6.0459 -3.9158 3.4406 13 6 6.9199 -3.3360 4.4709 14 6 8.0476 -4.3543 4.7411 15 6 8.0658 -5.2052 3.4438 16 1 8.6429 -4.7128 2.6611 17 6 8.6053 -6.6105 3.7172 18 7 10.0517 -6.5436 3.9402 19 6 10.7572 -7.6868 4.2059 20 1 10.2472 -8.6378 4.2507 21 6 12.1275 -7.6233 4.4177 22 7 12.8057 -8.7222 4.6726 23 14 13.0094 -5.9784 4.3395 24 1 13.4634 -5.7257 2.9483 25 1 12.0813 -4.8986 4.7612 26 1 14.1847 -6.0034 5.2468 27 6 6.5610 -5.2490 3.0793 28 7 3.2574 -0.8632 1.5061 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9562 0.8900 35 1 1.6767 -1.7489 -1.2494 36 1 1.6766 -0.2074 -2.1393 37 1 3.1300 -0.7209 -1.2496 38 1 4.3356 -1.9783 4.4477 39 1 5.3467 -1.2449 3.1796 40 1 7.3452 -2.3988 4.1117 41 1 6.3506 -3.1590 5.3833 42 1 7.8085 -4.9740 5.6054 43 1 9.0011 -3.8455 4.8821 44 1 8.3991 -7.2519 2.8603 45 1 8.1196 -7.0202 4.6029 46 1 10.5095 -5.6894 3.9003 47 1 13.7634 -8.6778 4.8202 48 1 6.4344 -5.4281 2.0116 49 1 6.0537 -6.0226 3.6557 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480644557.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:35 Heat of formation + Delta-G solvation = 103.999272 kcal Electronic energy + Delta-G solvation = -28705.502469 eV Core-core repulsion = 24706.258417 eV Total energy + Delta-G solvation = -3999.244053 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.55721 -40.17956 -38.17272 -37.71197 -34.89541 -33.81318 -33.44280 -32.31785 -30.78667 -29.81954 -29.09876 -28.14137 -28.01326 -25.65088 -24.82597 -23.45612 -22.50703 -21.95521 -20.96141 -20.27843 -19.40265 -17.82604 -17.54349 -17.42180 -16.95365 -16.38769 -15.80171 -14.95894 -14.91386 -14.64808 -14.54264 -14.41568 -14.01366 -13.81083 -13.61340 -13.52098 -13.23053 -13.10151 -12.93190 -12.91171 -12.83839 -12.52761 -12.44189 -12.35789 -12.12719 -12.06022 -11.83139 -11.63544 -11.60953 -11.10800 -11.03783 -10.98186 -10.71217 -10.64144 -10.54233 -10.49314 -10.15613 -9.91512 -9.60940 -8.92218 -8.74968 -7.25840 -5.78406 -3.14453 1.05653 1.56274 1.90813 2.45619 2.85811 3.33942 3.37201 3.43270 3.50512 3.79356 3.94666 4.05061 4.25622 4.26782 4.56705 4.59616 4.71185 4.79390 4.83154 4.88702 4.89860 4.90513 4.99104 5.04394 5.06977 5.14414 5.19349 5.31032 5.35012 5.40726 5.48453 5.49833 5.53280 5.54701 5.70062 5.73800 5.79698 5.85901 5.90648 6.01142 6.06737 6.15446 6.28680 6.61208 6.70494 7.35878 7.97056 7.98334 8.19991 8.40309 9.19104 9.91105 10.10655 11.39932 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.027788 B = 0.001862 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.396107 B =15035.468938 C =15161.106108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.179 3.821 3 C -0.158 4.158 4 C -0.159 4.159 5 N -0.129 5.129 6 N -0.062 5.062 7 N -0.276 5.276 8 C 0.185 3.815 9 C -0.039 4.039 10 C 0.536 3.464 11 O -0.535 6.535 12 N -0.615 5.615 13 C 0.095 3.905 14 C -0.124 4.124 15 C -0.110 4.110 16 H 0.085 0.915 17 C 0.168 3.832 18 N -0.754 5.754 19 C -0.245 4.245 20 H 0.090 0.910 21 C 0.004 3.996 22 N -0.934 5.934 23 Si 0.886 3.114 24 H -0.285 1.285 25 H -0.277 1.277 26 H -0.291 1.291 27 C 0.115 3.885 28 N -0.295 5.295 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.031 0.969 45 H 0.032 0.968 46 H 0.361 0.639 47 H 0.259 0.741 48 H 0.079 0.921 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.776 24.344 -7.891 34.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.098 3.902 3 C -0.216 4.216 4 C -0.218 4.218 5 N -0.043 5.043 6 N -0.054 5.054 7 N -0.147 5.147 8 C -0.098 4.098 9 C -0.082 4.082 10 C 0.323 3.677 11 O -0.411 6.411 12 N -0.349 5.349 13 C -0.027 4.027 14 C -0.162 4.162 15 C -0.130 4.130 16 H 0.103 0.897 17 C 0.041 3.959 18 N -0.400 5.400 19 C -0.375 4.375 20 H 0.108 0.892 21 C -0.192 4.192 22 N -0.581 5.581 23 Si 0.716 3.284 24 H -0.211 1.211 25 H -0.203 1.203 26 H -0.218 1.218 27 C -0.007 4.007 28 N -0.145 5.145 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.049 0.951 45 H 0.050 0.950 46 H 0.193 0.807 47 H 0.070 0.930 48 H 0.097 0.903 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -24.822 23.929 -8.485 35.506 hybrid contribution 1.400 1.014 0.141 1.735 sum -23.421 24.943 -8.344 35.218 Atomic orbital electron populations 1.22090 0.90072 1.04703 1.04208 1.21391 0.96448 0.92661 0.79734 1.22226 1.03318 0.92087 1.03982 1.22239 1.03409 1.01227 0.94899 1.50421 1.01089 1.34792 1.18021 1.78891 1.21924 1.09130 0.95502 1.75806 1.00700 1.18008 1.20216 1.24574 0.94811 0.98576 0.91822 1.19818 0.91934 0.95650 1.00792 1.19721 0.79585 0.86754 0.81681 1.90744 1.52770 1.65513 1.32086 1.48442 1.26596 1.19143 1.40753 1.22210 0.92044 0.97591 0.90893 1.22694 0.97729 0.97017 0.98740 1.22626 0.94332 0.98446 0.97571 0.89712 1.20529 0.85255 0.91681 0.98459 1.42650 1.02980 1.06772 1.87575 1.19056 0.90500 0.87398 1.40496 0.89183 1.24682 0.96232 0.96523 1.01755 1.69705 1.07433 1.25971 1.55039 0.86533 0.79536 0.84684 0.77643 1.21127 1.20339 1.21754 1.22244 0.93418 0.83602 1.01481 1.74532 1.03338 1.20462 1.16164 0.90623 0.89250 0.90539 0.90405 0.89153 0.91441 0.91251 0.89192 0.90383 0.85633 0.85998 0.91248 0.91036 0.89801 0.89774 0.95111 0.95041 0.80672 0.93048 0.90292 0.90814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 7.91 37.16 0.29 -0.43 16 2 C 0.18 1.17 1.30 -131.82 -0.17 1.00 16 3 C -0.16 -0.72 8.66 37.15 0.32 -0.40 16 4 C -0.16 -0.94 8.67 37.16 0.32 -0.62 16 5 N -0.13 -1.40 3.73 0.48 0.00 -1.40 16 6 N -0.06 -0.79 12.24 60.35 0.74 -0.06 16 7 N -0.28 -3.91 12.50 32.45 0.41 -3.50 16 8 C 0.19 2.36 6.86 -156.62 -1.07 1.28 16 9 C -0.04 -0.39 5.52 -29.04 -0.16 -0.55 16 10 C 0.54 7.11 7.84 -10.99 -0.09 7.03 16 11 O -0.53 -9.42 16.29 5.56 0.09 -9.33 16 12 N -0.61 -7.41 3.33 -170.53 -0.57 -7.98 16 13 C 0.10 0.89 6.49 -3.06 -0.02 0.87 16 14 C -0.12 -1.47 6.37 -24.90 -0.16 -1.63 16 15 C -0.11 -1.54 3.05 -88.48 -0.27 -1.81 16 16 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 17 C 0.17 3.06 5.71 -4.05 -0.02 3.04 16 18 N -0.75 -17.19 5.35 -59.91 -0.32 -17.52 16 19 C -0.24 -6.82 10.47 -15.06 -0.16 -6.97 16 20 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 21 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 22 N -0.93 -29.10 13.97 55.49 0.78 -28.33 16 23 Si 0.89 21.60 27.74 -169.99 -4.71 16.89 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.21 6.52 56.52 0.37 -5.84 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 C 0.12 1.53 6.38 -2.54 -0.02 1.51 16 28 N -0.29 -3.61 11.83 32.47 0.38 -3.23 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 1.03 7.91 -51.93 -0.41 0.62 16 43 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.03 0.58 7.97 -51.93 -0.41 0.16 16 46 H 0.36 7.93 5.53 -40.82 -0.23 7.71 16 47 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 48 H 0.08 1.12 8.04 -51.93 -0.42 0.70 16 49 H 0.07 0.98 8.03 -51.93 -0.42 0.56 16 LS Contribution 402.54 15.07 6.07 6.07 Total: -1.00 -37.03 402.54 -6.68 -43.71 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -8.24 Total: 2.33 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -1.30 Total: 2.34 kcal Atomic # 7 Polarization: -63.43 SS G_CDS: 1.42 Total: -62.01 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.71 Total: 16.89 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -37.03 -6.68 -43.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480644557.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.711 kcal (2) G-P(sol) polarization free energy of solvation -37.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds