Wall clock time and date at job start Tue Mar 31 2020 19:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52990 * 109.47259 * 2 1 4 4 C 1.53005 * 109.46751 * 240.00022 * 2 1 3 5 5 N 1.46497 * 109.47151 * 120.00410 * 2 1 3 6 6 N 1.28780 * 125.44814 * 0.02562 * 5 2 1 7 7 N 1.28997 * 108.72929 * 179.97438 * 6 5 2 8 8 C 1.33320 * 107.35176 * 359.97438 * 7 6 5 9 9 C 1.50696 * 126.55049 * 180.02562 * 8 7 6 10 10 C 1.50694 * 109.47214 * 90.02140 * 9 8 7 11 11 O 1.21280 * 120.00071 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00246 * 179.97438 * 10 9 8 13 13 C 1.47022 * 125.64725 * 359.96409 * 12 10 9 14 14 C 1.54326 * 107.27307 * 181.09668 * 13 12 10 15 15 C 1.55157 * 102.94348 * 22.18831 * 14 13 12 16 16 H 1.09002 * 111.03349 * 82.58619 * 15 14 13 17 17 C 1.52993 * 111.00367 * 206.42616 * 15 14 13 18 18 N 1.46496 * 109.47551 * 287.19545 * 17 15 14 19 19 C 1.36934 * 120.00548 * 179.97438 * 18 17 15 20 20 H 1.08004 * 119.99288 * 0.02562 * 19 18 17 21 21 C 1.38805 * 120.00389 * 180.02562 * 19 18 17 22 22 N 1.31624 * 120.00257 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 270.00277 * 23 21 19 25 25 H 1.48501 * 109.47062 * 30.00228 * 23 21 19 26 26 H 1.48499 * 109.46981 * 150.00382 * 23 21 19 27 27 C 1.47420 * 125.65158 * 180.02562 * 12 10 9 28 28 N 1.28880 * 125.45034 * 180.30645 * 5 2 1 29 29 H 1.08995 * 109.46953 * 299.99953 * 1 2 3 30 30 H 1.08998 * 109.47136 * 59.99999 * 1 2 3 31 31 H 1.09002 * 109.46965 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47606 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47459 * 300.00186 * 3 2 1 34 34 H 1.09006 * 109.46729 * 59.99828 * 3 2 1 35 35 H 1.08993 * 109.47450 * 300.00003 * 4 2 1 36 36 H 1.09004 * 109.47004 * 60.00403 * 4 2 1 37 37 H 1.09004 * 109.46795 * 179.97438 * 4 2 1 38 38 H 1.09006 * 109.46949 * 330.02070 * 9 8 7 39 39 H 1.09001 * 109.47400 * 210.02668 * 9 8 7 40 40 H 1.09007 * 109.88245 * 300.50766 * 13 12 10 41 41 H 1.09000 * 109.88559 * 61.51645 * 13 12 10 42 42 H 1.08999 * 110.71472 * 263.82749 * 14 13 12 43 43 H 1.08993 * 110.72323 * 140.56002 * 14 13 12 44 44 H 1.09004 * 109.46862 * 167.19744 * 17 15 14 45 45 H 1.09004 * 109.46998 * 47.20222 * 17 15 14 46 46 H 0.96999 * 119.99694 * 0.02562 * 18 17 15 47 47 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 48 48 H 1.09002 * 110.36973 * 37.00074 * 27 12 10 49 49 H 1.08998 * 110.46174 * 274.72582 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0184 -0.6907 1.1961 6 7 1.2783 -1.2181 2.1085 7 7 2.0399 -1.7390 3.0099 8 6 3.3017 -1.5240 2.6369 9 6 4.5420 -1.9530 3.3776 10 6 4.9551 -3.3257 2.9130 11 8 4.3065 -3.8991 2.0636 12 7 6.0459 -3.9158 3.4406 13 6 6.9199 -3.3360 4.4709 14 6 8.0476 -4.3543 4.7411 15 6 8.0658 -5.2052 3.4438 16 1 8.6429 -4.7128 2.6611 17 6 8.6053 -6.6105 3.7172 18 7 10.0517 -6.5436 3.9402 19 6 10.7572 -7.6868 4.2059 20 1 10.2472 -8.6378 4.2507 21 6 12.1275 -7.6233 4.4177 22 7 12.8057 -8.7222 4.6726 23 14 13.0094 -5.9784 4.3395 24 1 13.4634 -5.7257 2.9483 25 1 12.0813 -4.8986 4.7612 26 1 14.1847 -6.0034 5.2468 27 6 6.5610 -5.2490 3.0793 28 7 3.2574 -0.8632 1.5061 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9562 0.8900 35 1 1.6767 -1.7489 -1.2494 36 1 1.6766 -0.2074 -2.1393 37 1 3.1300 -0.7209 -1.2496 38 1 4.3356 -1.9783 4.4477 39 1 5.3467 -1.2449 3.1796 40 1 7.3452 -2.3988 4.1117 41 1 6.3506 -3.1590 5.3833 42 1 7.8085 -4.9740 5.6054 43 1 9.0011 -3.8455 4.8821 44 1 8.3991 -7.2519 2.8603 45 1 8.1196 -7.0202 4.6029 46 1 10.5095 -5.6894 3.9003 47 1 13.7634 -8.6778 4.8202 48 1 6.4344 -5.4281 2.0116 49 1 6.0537 -6.0226 3.6557 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480644557.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:34 Heat of formation + Delta-G solvation = 77.079146 kcal Electronic energy + Delta-G solvation = -28706.669813 eV Core-core repulsion = 24706.258417 eV Total energy + Delta-G solvation = -4000.411397 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -45.41462 -41.18858 -39.03721 -38.53828 -36.58193 -34.71192 -34.28255 -33.93952 -32.38006 -30.67746 -30.18724 -28.53926 -28.45850 -27.16177 -25.64665 -24.62935 -23.75979 -23.29066 -21.64874 -21.52122 -20.33419 -19.62563 -18.62121 -18.04357 -17.86144 -17.45789 -16.76708 -16.50723 -15.95133 -15.63046 -15.27841 -15.19886 -15.14062 -14.94846 -14.85066 -14.68275 -14.23011 -14.15812 -13.94228 -13.78201 -13.45369 -13.32788 -13.24335 -13.18294 -13.00493 -12.88484 -12.86694 -12.79991 -12.57869 -12.17906 -12.10913 -12.03049 -11.97353 -11.88828 -11.82339 -11.74192 -11.58677 -11.40589 -10.95108 -10.90231 -9.71781 -9.28390 -8.00565 -5.34996 0.19262 0.89101 1.01409 1.39993 1.45496 1.48916 1.52831 1.93280 2.51448 2.77092 3.13126 3.27796 3.32903 3.50605 3.55729 3.60095 3.64618 3.65881 3.87123 4.10211 4.18378 4.32638 4.37184 4.40576 4.44396 4.49479 4.51171 4.53637 4.58987 4.61292 4.66335 4.70472 4.71693 4.75473 4.82945 4.85981 5.00382 5.01580 5.09747 5.09849 5.20488 5.22248 5.24625 5.33494 5.41683 5.77270 6.22595 6.42541 7.00233 7.10038 7.30876 7.84545 8.05916 9.20911 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.027788 B = 0.001862 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.396107 B =15035.468938 C =15161.106108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.162 3.838 3 C -0.151 4.151 4 C -0.156 4.156 5 N -0.119 5.119 6 N -0.078 5.078 7 N -0.309 5.309 8 C 0.173 3.827 9 C -0.032 4.032 10 C 0.533 3.467 11 O -0.589 6.589 12 N -0.612 5.612 13 C 0.097 3.903 14 C -0.123 4.123 15 C -0.100 4.100 16 H 0.087 0.913 17 C 0.166 3.834 18 N -0.753 5.753 19 C -0.237 4.237 20 H 0.052 0.948 21 C -0.067 4.067 22 N -0.986 5.986 23 Si 0.959 3.041 24 H -0.281 1.281 25 H -0.240 1.240 26 H -0.297 1.297 27 C 0.118 3.882 28 N -0.306 5.306 29 H 0.070 0.930 30 H 0.125 0.875 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.124 0.876 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.127 0.873 37 H 0.062 0.938 38 H 0.155 0.845 39 H 0.155 0.845 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.020 0.980 45 H 0.031 0.969 46 H 0.369 0.631 47 H 0.258 0.742 48 H 0.064 0.936 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.253 28.576 -8.118 38.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.083 3.917 3 C -0.210 4.210 4 C -0.214 4.214 5 N -0.035 5.035 6 N -0.070 5.070 7 N -0.179 5.179 8 C -0.110 4.110 9 C -0.074 4.074 10 C 0.322 3.678 11 O -0.469 6.469 12 N -0.345 5.345 13 C -0.024 4.024 14 C -0.161 4.161 15 C -0.119 4.119 16 H 0.105 0.895 17 C 0.039 3.961 18 N -0.399 5.399 19 C -0.368 4.368 20 H 0.070 0.930 21 C -0.258 4.258 22 N -0.636 5.636 23 Si 0.786 3.214 24 H -0.207 1.207 25 H -0.164 1.164 26 H -0.224 1.224 27 C -0.005 4.005 28 N -0.156 5.156 29 H 0.089 0.911 30 H 0.143 0.857 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.142 0.858 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.145 0.855 37 H 0.081 0.919 38 H 0.172 0.828 39 H 0.173 0.827 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.097 0.903 43 H 0.110 0.890 44 H 0.038 0.962 45 H 0.049 0.951 46 H 0.203 0.797 47 H 0.066 0.934 48 H 0.082 0.918 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -25.343 28.202 -8.693 38.900 hybrid contribution 1.458 -0.409 0.124 1.519 sum -23.885 27.793 -8.569 37.635 Atomic orbital electron populations 1.22136 0.88684 1.04156 1.05730 1.22005 0.97667 0.93584 0.78491 1.22242 1.02636 0.90621 1.05471 1.22263 1.02419 1.00598 0.96123 1.50954 1.00641 1.33609 1.18271 1.78806 1.22277 1.09819 0.96085 1.75751 1.01585 1.19187 1.21368 1.25116 0.95294 0.98467 0.92102 1.19998 0.91759 0.93793 1.01880 1.20308 0.79027 0.87658 0.80809 1.90724 1.54518 1.67060 1.34617 1.48474 1.26565 1.18469 1.40955 1.22420 0.91073 0.97525 0.91389 1.22700 0.99242 0.97186 0.96925 1.22401 0.94287 0.95999 0.99256 0.89451 1.20630 0.82955 0.94651 0.97820 1.42572 1.04561 1.05458 1.87274 1.19019 0.90869 0.87783 1.39160 0.92971 1.25591 0.97178 1.00937 1.02131 1.69908 1.07628 1.28995 1.57095 0.85351 0.78216 0.80364 0.77516 1.20742 1.16356 1.22432 1.22059 0.93060 0.84777 1.00614 1.74501 1.04095 1.20866 1.16179 0.91076 0.85698 0.92110 0.91426 0.85773 0.91794 0.93200 0.85501 0.91861 0.82758 0.82701 0.88252 0.88153 0.90324 0.89044 0.96222 0.95145 0.79750 0.93370 0.91761 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 7.91 71.98 0.57 -0.62 16 2 C 0.16 1.90 1.30 3.60 0.00 1.91 16 3 C -0.15 -1.04 8.66 71.98 0.62 -0.42 16 4 C -0.16 -1.65 8.67 71.98 0.62 -1.02 16 5 N -0.12 -2.53 3.73 -152.40 -0.57 -3.10 16 6 N -0.08 -2.01 12.24 37.02 0.45 -1.55 16 7 N -0.31 -8.71 12.50 -51.26 -0.64 -9.35 16 8 C 0.17 4.25 6.86 138.55 0.95 5.20 16 9 C -0.03 -0.55 5.52 29.10 0.16 -0.39 16 10 C 0.53 13.32 7.84 87.66 0.69 14.01 16 11 O -0.59 -20.90 16.29 -3.03 -0.05 -20.95 16 12 N -0.61 -13.29 3.33 -811.83 -2.70 -15.99 16 13 C 0.10 1.39 6.49 86.73 0.56 1.95 16 14 C -0.12 -2.49 6.37 31.78 0.20 -2.29 16 15 C -0.10 -2.62 3.05 -9.41 -0.03 -2.65 16 16 H 0.09 2.29 8.14 -2.39 -0.02 2.28 16 17 C 0.17 5.98 5.71 86.38 0.49 6.47 16 18 N -0.75 -33.61 5.35 -343.47 -1.84 -35.45 16 19 C -0.24 -13.42 10.47 84.03 0.88 -12.54 16 20 H 0.05 3.27 8.06 -2.91 -0.02 3.25 16 21 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 22 N -0.99 -63.08 13.97 21.65 0.30 -62.77 16 23 Si 0.96 43.90 27.74 68.60 1.90 45.81 16 24 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 25 H -0.24 -9.39 6.52 99.48 0.65 -8.74 16 26 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 27 C 0.12 3.05 6.38 86.85 0.55 3.60 16 28 N -0.31 -7.27 11.83 -51.20 -0.61 -7.88 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.12 0.08 8.14 -2.39 -0.02 0.06 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.12 0.01 8.14 -2.38 -0.02 -0.01 16 34 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 35 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.13 0.35 8.14 -2.38 -0.02 0.33 16 37 H 0.06 0.86 8.14 -2.38 -0.02 0.85 16 38 H 0.15 1.70 8.14 -2.38 -0.02 1.68 16 39 H 0.16 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 41 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.08 1.70 7.91 -2.39 -0.02 1.68 16 43 H 0.09 1.77 8.14 -2.39 -0.02 1.76 16 44 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 45 H 0.03 1.12 7.97 -2.39 -0.02 1.10 16 46 H 0.37 15.24 5.53 -92.71 -0.51 14.72 16 47 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 48 H 0.06 1.84 8.04 -2.39 -0.02 1.82 16 49 H 0.07 1.85 8.03 -2.39 -0.02 1.83 16 Total: -1.00 -85.29 402.54 3.37 -81.91 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.37 Total: 19.57 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 6.75 Total: 9.76 kcal Atomic # 7 Polarization: -130.50 SS G_CDS: -5.60 Total: -136.10 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.05 Total: -20.95 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.90 Total: 45.81 kcal Total: -85.29 3.37 -81.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480644557.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.992 kcal (2) G-P(sol) polarization free energy of solvation -85.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds