Wall clock time and date at job start Tue Mar 31 2020 20:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46918 * 2 1 4 4 H 1.08991 * 109.47210 * 305.00551 * 3 2 1 5 5 C 1.53000 * 109.46846 * 185.00050 * 3 2 1 6 6 N 1.46499 * 109.46840 * 185.00008 * 5 3 2 7 7 C 1.34779 * 119.99872 * 180.02562 * 6 5 3 8 8 O 1.21278 * 120.00071 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99944 * 180.02562 * 7 6 5 10 10 N 1.46500 * 109.47155 * 60.00161 * 9 7 6 11 11 C 1.34599 * 126.43799 * 284.71280 * 10 9 7 12 12 N 1.31072 * 106.68169 * 179.87776 * 11 10 9 13 13 N 1.28847 * 107.98681 * 0.38682 * 12 11 10 14 14 N 1.28741 * 109.39482 * 359.75182 * 13 12 11 15 15 C 1.52996 * 109.46946 * 299.99948 * 9 7 6 16 16 C 1.53005 * 109.47245 * 179.97438 * 15 9 7 17 17 C 1.53000 * 109.46632 * 59.99973 * 16 15 9 18 18 C 1.52996 * 109.47518 * 300.00318 * 17 16 15 19 19 C 1.52997 * 109.47084 * 180.02562 * 9 7 6 20 20 N 1.46504 * 109.46878 * 65.00452 * 3 2 1 21 21 C 1.36929 * 119.99940 * 274.99762 * 20 3 2 22 22 H 1.08007 * 120.00260 * 359.97438 * 21 20 3 23 23 C 1.38808 * 120.00410 * 180.02562 * 21 20 3 24 24 N 1.31625 * 119.99828 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00548 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47186 * 59.99665 * 25 23 21 27 27 H 1.48502 * 109.47374 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47097 * 300.00036 * 25 23 21 29 29 H 1.08993 * 109.47728 * 59.99548 * 1 2 3 30 30 H 1.08998 * 109.47041 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.47313 * 299.99451 * 1 2 3 32 32 H 1.09000 * 109.47255 * 240.00648 * 2 1 3 33 33 H 1.08994 * 109.47464 * 119.99975 * 2 1 3 34 34 H 1.09002 * 109.47398 * 305.00335 * 5 3 2 35 35 H 1.09001 * 109.47194 * 65.00515 * 5 3 2 36 36 H 0.97000 * 120.00420 * 0.02562 * 6 5 3 37 37 H 1.08006 * 126.65763 * 0.02562 * 11 10 9 38 38 H 1.09001 * 109.47372 * 299.99872 * 15 9 7 39 39 H 1.09004 * 109.47108 * 60.00127 * 15 9 7 40 40 H 1.09001 * 109.46962 * 300.00283 * 16 15 9 41 41 H 1.08992 * 109.47457 * 180.02562 * 16 15 9 42 42 H 1.09000 * 109.46968 * 180.02562 * 17 16 15 43 43 H 1.09001 * 109.47194 * 60.00452 * 17 16 15 44 44 H 1.09001 * 109.46993 * 299.99696 * 18 17 16 45 45 H 1.09000 * 109.47380 * 180.02562 * 18 17 16 46 46 H 1.09002 * 109.47045 * 299.99967 * 19 9 7 47 47 H 1.09001 * 109.47375 * 60.00042 * 19 9 7 48 48 H 0.96996 * 120.00090 * 94.99890 * 20 3 2 49 49 H 0.96994 * 120.00251 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5648 1.4444 -0.1257 6 7 4.0629 2.8169 -0.0060 7 6 5.3856 3.0631 -0.0869 8 8 6.1633 2.1485 -0.2583 9 6 5.8981 4.4749 0.0369 10 7 5.5156 5.0207 1.3416 11 6 4.2896 5.4417 1.7038 12 7 4.3832 5.8483 2.9463 13 7 5.6050 5.6931 3.3247 14 7 6.2920 5.1932 2.3574 15 6 5.2931 5.3363 -1.0734 16 6 5.8129 6.7698 -0.9474 17 6 7.3377 6.7722 -1.0736 18 6 7.9427 5.9108 0.0367 19 6 7.4228 4.4769 -0.0902 20 7 1.6524 2.0975 1.2519 21 6 0.4156 2.6734 1.3690 22 1 -0.2741 2.6453 0.5383 23 6 0.0486 3.2944 2.5549 24 7 0.8892 3.3292 3.5671 25 14 -1.6389 4.0795 2.7149 26 1 -2.6866 3.0468 2.5114 27 1 -1.7835 4.6705 4.0695 28 1 -1.7883 5.1447 1.6910 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.9954 0.8311 0.6658 35 1 3.8498 1.0378 -1.0961 36 1 3.4409 3.5484 0.1316 37 1 3.4006 5.4419 1.0904 38 1 5.5777 4.9302 -2.0442 39 1 4.2068 5.3349 -0.9833 40 1 5.5280 7.1755 0.0233 41 1 5.3816 7.3835 -1.7382 42 1 7.7081 7.7933 -0.9834 43 1 7.6227 6.3664 -2.0443 44 1 7.6579 6.3166 1.0074 45 1 9.0290 5.9128 -0.0529 46 1 7.8541 3.8632 0.7006 47 1 7.7070 4.0711 -1.0611 48 1 2.2719 2.1231 1.9978 49 1 0.6326 3.7628 4.3960 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481838361.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:22 Heat of formation + Delta-G solvation = 84.125285 kcal Electronic energy + Delta-G solvation = -31570.627927 eV Core-core repulsion = 27570.522073 eV Total energy + Delta-G solvation = -4000.105853 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.08140 -40.58550 -38.29363 -36.83411 -34.61502 -34.02466 -32.60656 -32.27770 -31.05908 -30.70531 -29.81288 -28.04450 -25.01590 -24.14085 -23.70490 -23.13239 -22.63613 -22.17916 -20.65211 -20.31257 -19.98813 -18.10091 -17.33332 -17.17422 -16.32927 -16.02315 -15.63718 -15.37897 -15.05856 -14.63918 -14.50922 -14.14942 -14.06057 -13.45255 -13.43561 -13.22308 -13.11666 -12.96156 -12.78032 -12.63265 -12.48252 -12.26823 -11.84143 -11.57919 -11.55266 -11.24271 -11.03593 -11.01307 -10.92748 -10.86065 -10.81635 -10.75906 -10.57511 -10.51002 -10.29195 -10.12729 -10.09248 -9.69323 -9.59963 -9.05021 -8.99575 -7.11941 -5.84663 -3.16969 1.39639 1.70521 2.59099 2.67595 2.99456 3.36750 3.42627 3.46322 3.79178 4.10978 4.29379 4.43635 4.49559 4.64065 4.71994 4.76379 4.89682 4.99581 5.06823 5.15043 5.21792 5.32857 5.34680 5.44869 5.45568 5.55204 5.65284 5.73194 5.74169 5.75988 5.81773 5.84513 5.85908 5.92144 5.98081 6.00640 6.10706 6.28404 6.30051 6.36131 6.44108 6.49676 6.62705 6.89901 7.17047 7.41828 7.60881 8.01345 8.30093 8.88467 9.42214 9.93991 10.29750 11.35606 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011950 B = 0.004496 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.523866 B = 6226.893539 C = 7544.840104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.163 3.837 4 H 0.055 0.945 5 C 0.112 3.888 6 N -0.701 5.701 7 C 0.507 3.493 8 O -0.522 6.522 9 C 0.163 3.837 10 N -0.300 5.300 11 C 0.174 3.826 12 N -0.283 5.283 13 N -0.080 5.080 14 N -0.090 5.090 15 C -0.128 4.128 16 C -0.122 4.122 17 C -0.122 4.122 18 C -0.126 4.126 19 C -0.098 4.098 20 N -0.722 5.722 21 C -0.252 4.252 22 H 0.072 0.928 23 C -0.002 4.002 24 N -0.918 5.918 25 Si 0.901 3.099 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.040 0.960 30 H 0.032 0.968 31 H 0.086 0.914 32 H 0.042 0.958 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.407 0.593 37 H 0.228 0.772 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.094 0.906 48 H 0.384 0.616 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.282 4.249 -13.712 17.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.073 0.927 5 C -0.012 4.012 6 N -0.353 5.353 7 C 0.289 3.711 8 O -0.397 6.397 9 C 0.076 3.924 10 N -0.104 5.104 11 C -0.124 4.124 12 N -0.130 5.130 13 N -0.074 5.074 14 N -0.076 5.076 15 C -0.166 4.166 16 C -0.159 4.159 17 C -0.160 4.160 18 C -0.164 4.164 19 C -0.136 4.136 20 N -0.364 5.364 21 C -0.383 4.383 22 H 0.090 0.910 23 C -0.200 4.200 24 N -0.564 5.564 25 Si 0.731 3.269 26 H -0.214 1.214 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.244 0.756 37 H 0.244 0.756 38 H 0.121 0.879 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.108 0.892 47 H 0.112 0.888 48 H 0.218 0.782 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.327 3.904 -12.594 17.382 hybrid contribution -1.775 0.289 -0.366 1.835 sum 9.553 4.193 -12.960 16.637 Atomic orbital electron populations 1.21760 0.95539 0.99704 1.03314 1.22071 0.97136 0.98228 1.00016 1.20567 0.89322 0.93127 0.91704 0.92698 1.21831 0.96262 0.81598 1.01539 1.46064 1.06556 1.11584 1.71049 1.20149 0.83307 0.89377 0.78313 1.90735 1.55852 1.44505 1.48641 1.21517 1.00078 0.91722 0.79116 1.48620 1.07640 1.42005 1.12152 1.27609 0.91247 0.98637 0.94943 1.75120 1.11190 1.18858 1.07826 1.78655 0.97456 1.13085 1.18252 1.78774 1.20499 1.16432 0.91879 1.22074 1.01301 0.95908 0.97348 1.21572 0.96495 0.94928 1.02919 1.21603 0.94718 1.00419 0.99245 1.21689 1.00807 0.93939 0.99969 1.21577 0.88340 0.98726 1.04991 1.42455 1.16920 1.65973 1.11085 1.19067 0.92080 1.28958 0.98193 0.91010 1.24737 0.97782 1.01152 0.96299 1.69621 1.35025 1.47766 1.03981 0.86399 0.84359 0.79166 0.76934 1.21382 1.21689 1.21265 0.94105 0.94867 0.89557 0.93881 0.92546 0.91494 0.91222 0.75588 0.75621 0.87906 0.89817 0.91855 0.90291 0.91439 0.91391 0.90653 0.90710 0.89249 0.88774 0.78228 0.93081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.18 37.16 0.34 -2.11 16 2 C -0.13 -2.14 5.61 -26.73 -0.15 -2.29 16 3 C 0.16 2.72 2.59 -67.92 -0.18 2.54 16 4 H 0.06 0.90 8.08 -51.93 -0.42 0.48 16 5 C 0.11 1.68 5.23 -4.04 -0.02 1.66 16 6 N -0.70 -10.02 5.15 -60.29 -0.31 -10.33 16 7 C 0.51 7.26 6.73 -10.98 -0.07 7.19 16 8 O -0.52 -8.86 15.98 5.56 0.09 -8.77 16 9 C 0.16 1.91 0.69 -132.97 -0.09 1.82 16 10 N -0.30 -4.25 2.27 -50.89 -0.12 -4.36 16 11 C 0.17 2.70 10.33 -90.39 -0.93 1.77 16 12 N -0.28 -5.41 12.36 29.59 0.37 -5.04 16 13 N -0.08 -1.52 13.43 60.35 0.81 -0.71 16 14 N -0.09 -1.50 10.60 60.35 0.64 -0.86 16 15 C -0.13 -1.08 4.32 -26.73 -0.12 -1.20 16 16 C -0.12 -0.97 5.75 -26.73 -0.15 -1.12 16 17 C -0.12 -0.93 5.92 -26.73 -0.16 -1.08 16 18 C -0.13 -1.19 5.71 -26.71 -0.15 -1.34 16 19 C -0.10 -1.07 3.70 -26.71 -0.10 -1.17 16 20 N -0.72 -15.22 4.51 -53.42 -0.24 -15.46 16 21 C -0.25 -5.98 7.75 -15.06 -0.12 -6.09 16 22 H 0.07 1.66 7.33 -52.48 -0.38 1.28 16 23 C 0.00 -0.04 5.50 -17.43 -0.10 -0.14 16 24 N -0.92 -25.65 13.06 55.49 0.72 -24.93 16 25 Si 0.90 20.85 29.55 -169.99 -5.02 15.82 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.09 1.74 5.99 -51.92 -0.31 1.43 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.41 5.74 5.88 -40.82 -0.24 5.50 16 37 H 0.23 2.95 6.91 -52.48 -0.36 2.59 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.65 6.84 -51.93 -0.36 0.30 16 40 H 0.06 0.62 7.08 -51.93 -0.37 0.26 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.88 6.15 -51.93 -0.32 0.56 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 1.15 8.00 -51.93 -0.42 0.74 16 47 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 48 H 0.38 9.17 7.80 -40.82 -0.32 8.85 16 49 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 383.28 15.07 5.78 5.78 Total: -1.00 -30.10 383.28 -6.98 -37.08 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -7.70 Total: 13.36 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -2.00 Total: -1.57 kcal Atomic # 7 Polarization: -63.57 SS G_CDS: 1.87 Total: -61.70 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.09 Total: -8.77 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.10 -6.98 -37.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481838361.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.206 kcal (2) G-P(sol) polarization free energy of solvation -30.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds