Wall clock time and date at job start Tue Mar 31 2020 20:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46918 * 2 1 4 4 H 1.08991 * 109.47210 * 305.00551 * 3 2 1 5 5 C 1.53000 * 109.46846 * 185.00050 * 3 2 1 6 6 N 1.46499 * 109.46840 * 185.00008 * 5 3 2 7 7 C 1.34779 * 119.99872 * 180.02562 * 6 5 3 8 8 O 1.21278 * 120.00071 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99944 * 180.02562 * 7 6 5 10 10 N 1.46500 * 109.47155 * 60.00161 * 9 7 6 11 11 C 1.34599 * 126.43799 * 284.71280 * 10 9 7 12 12 N 1.31072 * 106.68169 * 179.87776 * 11 10 9 13 13 N 1.28847 * 107.98681 * 0.38682 * 12 11 10 14 14 N 1.28741 * 109.39482 * 359.75182 * 13 12 11 15 15 C 1.52996 * 109.46946 * 299.99948 * 9 7 6 16 16 C 1.53005 * 109.47245 * 179.97438 * 15 9 7 17 17 C 1.53000 * 109.46632 * 59.99973 * 16 15 9 18 18 C 1.52996 * 109.47518 * 300.00318 * 17 16 15 19 19 C 1.52997 * 109.47084 * 180.02562 * 9 7 6 20 20 N 1.46504 * 109.46878 * 65.00452 * 3 2 1 21 21 C 1.36929 * 119.99940 * 274.99762 * 20 3 2 22 22 H 1.08007 * 120.00260 * 359.97438 * 21 20 3 23 23 C 1.38808 * 120.00410 * 180.02562 * 21 20 3 24 24 N 1.31625 * 119.99828 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00548 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47186 * 59.99665 * 25 23 21 27 27 H 1.48502 * 109.47374 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47097 * 300.00036 * 25 23 21 29 29 H 1.08993 * 109.47728 * 59.99548 * 1 2 3 30 30 H 1.08998 * 109.47041 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.47313 * 299.99451 * 1 2 3 32 32 H 1.09000 * 109.47255 * 240.00648 * 2 1 3 33 33 H 1.08994 * 109.47464 * 119.99975 * 2 1 3 34 34 H 1.09002 * 109.47398 * 305.00335 * 5 3 2 35 35 H 1.09001 * 109.47194 * 65.00515 * 5 3 2 36 36 H 0.97000 * 120.00420 * 0.02562 * 6 5 3 37 37 H 1.08006 * 126.65763 * 0.02562 * 11 10 9 38 38 H 1.09001 * 109.47372 * 299.99872 * 15 9 7 39 39 H 1.09004 * 109.47108 * 60.00127 * 15 9 7 40 40 H 1.09001 * 109.46962 * 300.00283 * 16 15 9 41 41 H 1.08992 * 109.47457 * 180.02562 * 16 15 9 42 42 H 1.09000 * 109.46968 * 180.02562 * 17 16 15 43 43 H 1.09001 * 109.47194 * 60.00452 * 17 16 15 44 44 H 1.09001 * 109.46993 * 299.99696 * 18 17 16 45 45 H 1.09000 * 109.47380 * 180.02562 * 18 17 16 46 46 H 1.09002 * 109.47045 * 299.99967 * 19 9 7 47 47 H 1.09001 * 109.47375 * 60.00042 * 19 9 7 48 48 H 0.96996 * 120.00090 * 94.99890 * 20 3 2 49 49 H 0.96994 * 120.00251 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5648 1.4444 -0.1257 6 7 4.0629 2.8169 -0.0060 7 6 5.3856 3.0631 -0.0869 8 8 6.1633 2.1485 -0.2583 9 6 5.8981 4.4749 0.0369 10 7 5.5156 5.0207 1.3416 11 6 4.2896 5.4417 1.7038 12 7 4.3832 5.8483 2.9463 13 7 5.6050 5.6931 3.3247 14 7 6.2920 5.1932 2.3574 15 6 5.2931 5.3363 -1.0734 16 6 5.8129 6.7698 -0.9474 17 6 7.3377 6.7722 -1.0736 18 6 7.9427 5.9108 0.0367 19 6 7.4228 4.4769 -0.0902 20 7 1.6524 2.0975 1.2519 21 6 0.4156 2.6734 1.3690 22 1 -0.2741 2.6453 0.5383 23 6 0.0486 3.2944 2.5549 24 7 0.8892 3.3292 3.5671 25 14 -1.6389 4.0795 2.7149 26 1 -2.6866 3.0468 2.5114 27 1 -1.7835 4.6705 4.0695 28 1 -1.7883 5.1447 1.6910 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.9954 0.8311 0.6658 35 1 3.8498 1.0378 -1.0961 36 1 3.4409 3.5484 0.1316 37 1 3.4006 5.4419 1.0904 38 1 5.5777 4.9302 -2.0442 39 1 4.2068 5.3349 -0.9833 40 1 5.5280 7.1755 0.0233 41 1 5.3816 7.3835 -1.7382 42 1 7.7081 7.7933 -0.9834 43 1 7.6227 6.3664 -2.0443 44 1 7.6579 6.3166 1.0074 45 1 9.0290 5.9128 -0.0529 46 1 7.8541 3.8632 0.7006 47 1 7.7070 4.0711 -1.0611 48 1 2.2719 2.1231 1.9978 49 1 0.6326 3.7628 4.3960 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481838361.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:21 Heat of formation + Delta-G solvation = 64.653431 kcal Electronic energy + Delta-G solvation = -31571.472290 eV Core-core repulsion = 27570.522073 eV Total energy + Delta-G solvation = -4000.950216 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -45.35375 -41.68449 -39.32082 -38.22474 -35.75614 -35.33071 -34.21444 -33.58684 -31.87380 -31.75958 -31.41234 -29.42829 -26.11913 -25.59941 -24.98199 -24.51727 -23.61995 -23.25489 -21.82197 -21.30159 -21.24691 -19.42456 -18.79660 -18.38889 -17.53741 -17.23698 -16.92248 -16.72151 -16.22201 -15.82065 -15.60401 -15.33112 -15.21194 -14.92709 -14.61041 -14.48746 -14.19623 -14.10611 -13.92704 -13.67737 -13.44707 -13.36280 -13.04230 -12.96597 -12.77490 -12.71924 -12.55919 -12.35041 -12.22350 -12.14064 -12.12808 -11.87325 -11.76089 -11.63992 -11.57238 -11.38214 -11.30337 -11.26097 -10.91340 -10.75900 -10.24475 -8.94670 -7.81510 -5.09892 0.15229 0.56830 1.23105 1.52915 1.54565 1.54975 1.60938 1.87253 2.63324 2.84041 3.21942 3.28457 3.39799 3.53198 3.69115 3.87629 3.92653 3.93324 4.02555 4.05396 4.21250 4.30105 4.35779 4.36088 4.46204 4.48532 4.55350 4.62570 4.66522 4.70021 4.83779 4.86806 4.93151 5.03064 5.04550 5.07593 5.11006 5.15471 5.20666 5.23791 5.26060 5.33076 5.45724 5.55912 5.66850 5.74329 6.24202 6.34915 6.85032 7.44407 7.55557 8.14742 8.39081 9.39204 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011950 B = 0.004496 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.523866 B = 6226.893539 C = 7544.840104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.164 3.836 4 H 0.070 0.930 5 C 0.119 3.881 6 N -0.699 5.699 7 C 0.508 3.492 8 O -0.549 6.549 9 C 0.161 3.839 10 N -0.286 5.286 11 C 0.181 3.819 12 N -0.323 5.323 13 N -0.111 5.111 14 N -0.090 5.090 15 C -0.125 4.125 16 C -0.119 4.119 17 C -0.118 4.118 18 C -0.123 4.123 19 C -0.096 4.096 20 N -0.728 5.728 21 C -0.219 4.219 22 H 0.083 0.917 23 C -0.061 4.061 24 N -0.958 5.958 25 Si 0.950 3.050 26 H -0.286 1.286 27 H -0.312 1.312 28 H -0.273 1.273 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.046 0.954 35 H 0.095 0.905 36 H 0.409 0.591 37 H 0.250 0.750 38 H 0.130 0.870 39 H 0.093 0.907 40 H 0.039 0.961 41 H 0.103 0.897 42 H 0.073 0.927 43 H 0.090 0.910 44 H 0.047 0.953 45 H 0.087 0.913 46 H 0.062 0.938 47 H 0.114 0.886 48 H 0.368 0.632 49 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.235 4.204 -17.658 20.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.056 3.944 4 H 0.088 0.912 5 C -0.005 4.005 6 N -0.350 5.350 7 C 0.290 3.710 8 O -0.426 6.426 9 C 0.075 3.925 10 N -0.091 5.091 11 C -0.117 4.117 12 N -0.170 5.170 13 N -0.105 5.105 14 N -0.076 5.076 15 C -0.163 4.163 16 C -0.157 4.157 17 C -0.156 4.156 18 C -0.161 4.161 19 C -0.135 4.135 20 N -0.368 5.368 21 C -0.350 4.350 22 H 0.101 0.899 23 C -0.255 4.255 24 N -0.608 5.608 25 Si 0.782 3.218 26 H -0.213 1.213 27 H -0.240 1.240 28 H -0.199 1.199 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.113 0.887 36 H 0.246 0.754 37 H 0.266 0.734 38 H 0.148 0.852 39 H 0.111 0.889 40 H 0.057 0.943 41 H 0.122 0.878 42 H 0.092 0.908 43 H 0.109 0.891 44 H 0.066 0.934 45 H 0.106 0.894 46 H 0.080 0.920 47 H 0.132 0.868 48 H 0.200 0.800 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 11.267 3.844 -16.610 20.435 hybrid contribution -1.713 0.159 0.721 1.866 sum 9.554 4.002 -15.888 18.967 Atomic orbital electron populations 1.21689 0.95938 1.00442 1.01931 1.22000 0.96654 0.97569 1.00872 1.20751 0.90496 0.93319 0.89871 0.91162 1.21725 0.94800 0.81878 1.02086 1.46038 1.06760 1.11362 1.70819 1.20500 0.82902 0.90109 0.77477 1.90726 1.56378 1.45592 1.49866 1.21856 1.00943 0.90850 0.78854 1.48780 1.06951 1.40909 1.12429 1.27890 0.92067 0.97582 0.94198 1.75028 1.11628 1.20549 1.09823 1.78622 0.97778 1.14692 1.19394 1.78703 1.20763 1.15968 0.92164 1.22223 1.01733 0.95572 0.96801 1.21584 0.96927 0.94658 1.02499 1.21610 0.94232 1.00435 0.99299 1.21663 1.01759 0.93158 0.99509 1.21615 0.87488 0.99357 1.05003 1.42587 1.15829 1.66167 1.12222 1.19367 0.92539 1.25673 0.97453 0.89914 1.25270 1.00138 1.03344 0.96704 1.69783 1.36549 1.50266 1.04174 0.85573 0.81741 0.78644 0.75884 1.21323 1.23952 1.19934 0.92758 0.93279 0.93400 0.90453 0.94239 0.93591 0.88699 0.75358 0.73445 0.85224 0.88865 0.94254 0.87835 0.90808 0.89120 0.93399 0.89437 0.91956 0.86806 0.80050 0.94739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.43 9.18 71.98 0.66 -3.77 16 2 C -0.13 -3.83 5.61 30.60 0.17 -3.66 16 3 C 0.16 5.07 2.59 44.99 0.12 5.19 16 4 H 0.07 2.03 8.08 -2.39 -0.02 2.01 16 5 C 0.12 3.33 5.23 86.38 0.45 3.79 16 6 N -0.70 -18.68 5.15 -463.05 -2.38 -21.07 16 7 C 0.51 13.72 6.73 87.66 0.59 14.31 16 8 O -0.55 -17.88 15.98 -3.02 -0.05 -17.93 16 9 C 0.16 3.52 0.69 2.86 0.00 3.52 16 10 N -0.29 -8.07 2.27 -314.92 -0.71 -8.78 16 11 C 0.18 5.63 10.33 180.27 1.86 7.49 16 12 N -0.32 -12.78 12.36 -60.29 -0.74 -13.53 16 13 N -0.11 -4.39 13.43 37.01 0.50 -3.90 16 14 N -0.09 -3.06 10.60 37.02 0.39 -2.67 16 15 C -0.13 -1.71 4.32 30.59 0.13 -1.58 16 16 C -0.12 -1.55 5.75 30.60 0.18 -1.37 16 17 C -0.12 -1.43 5.92 30.59 0.18 -1.25 16 18 C -0.12 -2.14 5.71 30.61 0.17 -1.97 16 19 C -0.10 -1.96 3.70 30.61 0.11 -1.85 16 20 N -0.73 -30.06 4.51 -322.94 -1.46 -31.52 16 21 C -0.22 -10.13 7.75 84.03 0.65 -9.48 16 22 H 0.08 3.64 7.33 -2.91 -0.02 3.62 16 23 C -0.06 -3.17 5.50 84.86 0.47 -2.70 16 24 N -0.96 -55.06 13.06 21.65 0.28 -54.78 16 25 Si 0.95 43.14 29.55 68.60 2.03 45.17 16 26 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 27 H -0.31 -15.17 7.11 99.48 0.71 -14.47 16 28 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 29 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.05 1.86 5.99 -2.38 -0.01 1.84 16 32 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.41 10.73 5.88 -92.71 -0.55 10.18 16 37 H 0.25 6.26 6.91 -2.91 -0.02 6.24 16 38 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.09 1.13 6.84 -2.38 -0.02 1.11 16 40 H 0.04 0.71 7.08 -2.39 -0.02 0.70 16 41 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.05 1.11 6.15 -2.39 -0.01 1.10 16 45 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.06 1.61 8.00 -2.39 -0.02 1.59 16 47 H 0.11 1.88 8.10 -2.39 -0.02 1.86 16 48 H 0.37 17.71 7.80 -92.71 -0.72 16.99 16 49 H 0.24 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -67.93 383.28 3.31 -64.62 By element: Atomic # 1 Polarization: 38.00 SS G_CDS: -0.29 Total: 37.70 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 5.75 Total: 6.68 kcal Atomic # 7 Polarization: -132.12 SS G_CDS: -4.13 Total: -136.24 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.05 Total: -17.93 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -67.93 3.31 -64.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481838361.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.277 kcal (2) G-P(sol) polarization free energy of solvation -67.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds