Wall clock time and date at job start Tue Mar 31 2020 20:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47404 * 2 1 4 4 H 1.09002 * 109.47153 * 54.99686 * 3 2 1 5 5 C 1.53000 * 109.47060 * 175.00005 * 3 2 1 6 6 N 1.46507 * 109.46803 * 175.00213 * 5 3 2 7 7 C 1.34773 * 119.99647 * 179.97438 * 6 5 3 8 8 O 1.21284 * 120.00340 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99967 * 179.97438 * 7 6 5 10 10 N 1.46505 * 109.46765 * 60.00308 * 9 7 6 11 11 C 1.34602 * 126.43236 * 284.71287 * 10 9 7 12 12 N 1.31080 * 106.67291 * 179.87962 * 11 10 9 13 13 N 1.28843 * 107.99230 * 0.38394 * 12 11 10 14 14 N 1.28738 * 109.39540 * 359.75265 * 13 12 11 15 15 C 1.53001 * 109.46993 * 300.00484 * 9 7 6 16 16 C 1.52997 * 109.46695 * 179.97438 * 15 9 7 17 17 C 1.53008 * 109.47255 * 59.99990 * 16 15 9 18 18 C 1.53005 * 109.46774 * 299.99561 * 17 16 15 19 19 C 1.52997 * 109.47267 * 179.97438 * 9 7 6 20 20 N 1.46500 * 109.47007 * 294.99774 * 3 2 1 21 21 C 1.36933 * 119.99983 * 84.99832 * 20 3 2 22 22 H 1.08002 * 120.00189 * 0.02562 * 21 20 3 23 23 C 1.38812 * 120.00422 * 179.97438 * 21 20 3 24 24 N 1.31623 * 119.99438 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00488 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47149 * 89.99897 * 25 23 21 27 27 H 1.48501 * 109.46970 * 210.00013 * 25 23 21 28 28 H 1.48501 * 109.47193 * 329.99772 * 25 23 21 29 29 H 1.08996 * 109.47654 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47476 * 300.00087 * 1 2 3 31 31 H 1.09008 * 109.46970 * 60.00049 * 1 2 3 32 32 H 1.09000 * 109.47017 * 239.99643 * 2 1 3 33 33 H 1.09008 * 109.46970 * 119.99951 * 2 1 3 34 34 H 1.09008 * 109.47142 * 294.99397 * 5 3 2 35 35 H 1.08990 * 109.47170 * 54.99895 * 5 3 2 36 36 H 0.96994 * 119.99737 * 359.97438 * 6 5 3 37 37 H 1.07994 * 126.66671 * 0.02562 * 11 10 9 38 38 H 1.09001 * 109.46580 * 299.99174 * 15 9 7 39 39 H 1.08992 * 109.47123 * 59.99764 * 15 9 7 40 40 H 1.09000 * 109.47346 * 299.99867 * 16 15 9 41 41 H 1.09007 * 109.46964 * 179.97438 * 16 15 9 42 42 H 1.09001 * 109.47171 * 179.97438 * 17 16 15 43 43 H 1.09000 * 109.47044 * 59.99692 * 17 16 15 44 44 H 1.09001 * 109.46919 * 299.99878 * 18 17 16 45 45 H 1.09000 * 109.46490 * 180.02562 * 18 17 16 46 46 H 1.09003 * 109.47165 * 300.00552 * 19 9 7 47 47 H 1.09000 * 109.46818 * 60.00293 * 19 9 7 48 48 H 0.96997 * 120.00274 * 264.99726 * 20 3 2 49 49 H 0.97001 * 120.00131 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4442 0.1257 6 7 4.0631 2.8167 0.0060 7 6 5.3857 3.0629 0.0869 8 8 6.1634 2.1482 0.2583 9 6 5.8983 4.4747 -0.0368 10 7 5.3191 5.2994 1.0265 11 6 4.0587 5.7691 1.0770 12 7 3.9567 6.4533 2.1904 13 7 5.0973 6.4130 2.7882 14 7 5.9228 5.7166 2.0876 15 6 5.4988 5.0447 -1.3993 16 6 6.0187 6.4782 -1.5246 17 6 7.5435 6.4806 -1.3980 18 6 7.9429 5.9105 -0.0354 19 6 7.4230 4.4766 0.0903 20 7 1.6525 2.0974 -1.2518 21 6 0.4157 2.6734 -1.3689 22 1 -0.2739 2.6452 -0.5382 23 6 0.0487 3.2945 -2.5548 24 7 0.8897 3.3301 -3.5666 25 14 -1.6382 4.0808 -2.7143 26 1 -1.5655 5.5000 -2.2832 27 1 -2.0830 4.0155 -4.1296 28 1 -2.6071 3.3521 -1.8568 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8901 34 1 3.8499 1.0376 1.0961 35 1 3.9953 0.8310 -0.6658 36 1 3.4411 3.5482 -0.1315 37 1 3.2816 5.6108 0.3439 38 1 5.9298 4.4311 -2.1904 39 1 4.4126 5.0434 -1.4893 40 1 5.5875 7.0916 -0.7335 41 1 5.7345 6.8842 -2.4955 42 1 7.9140 7.5018 -1.4877 43 1 7.9748 5.8672 -2.1891 44 1 7.5117 6.5240 0.7556 45 1 9.0292 5.9127 0.0549 46 1 7.7072 4.0706 1.0611 47 1 7.8542 3.8629 -0.7006 48 1 2.2720 2.1231 -1.9978 49 1 0.6332 3.7638 -4.3955 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481838362.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:26 Heat of formation + Delta-G solvation = 80.778494 kcal Electronic energy + Delta-G solvation = -31368.252098 eV Core-core repulsion = 27368.001117 eV Total energy + Delta-G solvation = -4000.250981 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.33941 -40.62885 -38.31024 -36.87417 -34.74173 -34.09943 -32.74794 -32.41396 -31.06752 -30.79442 -29.87408 -28.08107 -25.09551 -24.27477 -23.84721 -23.23709 -22.68058 -22.21762 -20.66831 -20.41505 -20.03500 -18.15643 -17.46476 -17.23887 -16.49735 -16.05017 -15.79320 -15.52163 -14.89875 -14.71942 -14.44881 -14.31611 -14.07845 -13.57192 -13.40390 -13.25014 -13.18721 -13.05611 -12.74073 -12.62825 -12.53977 -12.31620 -12.06533 -11.61889 -11.56234 -11.38086 -11.13801 -11.09869 -10.98444 -10.97820 -10.86672 -10.83385 -10.60220 -10.49770 -10.36069 -10.31676 -10.16160 -9.76474 -9.66895 -9.11332 -9.03696 -7.20164 -5.96537 -3.26458 1.17226 1.54590 2.25501 2.59902 2.97094 3.30977 3.38609 3.39591 3.76199 4.13817 4.20075 4.33310 4.42533 4.62074 4.68102 4.78046 4.82131 4.99021 5.10499 5.17948 5.22268 5.27939 5.32392 5.38604 5.43085 5.52571 5.62939 5.71850 5.72926 5.75433 5.78087 5.80409 5.81713 5.89284 5.95249 5.97215 6.02366 6.20104 6.27038 6.28811 6.41957 6.48198 6.60384 6.87195 7.13785 7.39414 7.54572 7.98769 8.20601 8.59189 9.33398 9.85238 10.21901 11.24872 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.004110 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.863894 B = 6811.143900 C = 7474.452438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.162 3.838 4 H 0.055 0.945 5 C 0.112 3.888 6 N -0.701 5.701 7 C 0.508 3.492 8 O -0.521 6.521 9 C 0.162 3.838 10 N -0.293 5.293 11 C 0.163 3.837 12 N -0.300 5.300 13 N -0.082 5.082 14 N -0.083 5.083 15 C -0.129 4.129 16 C -0.121 4.121 17 C -0.124 4.124 18 C -0.125 4.125 19 C -0.099 4.099 20 N -0.722 5.722 21 C -0.241 4.241 22 H 0.074 0.926 23 C -0.007 4.007 24 N -0.929 5.929 25 Si 0.902 3.098 26 H -0.289 1.289 27 H -0.292 1.292 28 H -0.281 1.281 29 H 0.033 0.967 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.043 0.957 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.407 0.593 37 H 0.233 0.767 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.088 0.912 47 H 0.096 0.904 48 H 0.385 0.615 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.227 2.719 3.402 12.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.073 0.927 5 C -0.012 4.012 6 N -0.352 5.352 7 C 0.290 3.710 8 O -0.396 6.396 9 C 0.075 3.925 10 N -0.097 5.097 11 C -0.136 4.136 12 N -0.148 5.148 13 N -0.076 5.076 14 N -0.069 5.069 15 C -0.168 4.168 16 C -0.158 4.158 17 C -0.161 4.161 18 C -0.163 4.163 19 C -0.137 4.137 20 N -0.364 5.364 21 C -0.371 4.371 22 H 0.092 0.908 23 C -0.204 4.204 24 N -0.577 5.577 25 Si 0.732 3.268 26 H -0.216 1.216 27 H -0.218 1.218 28 H -0.207 1.207 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.245 0.755 37 H 0.249 0.751 38 H 0.124 0.876 39 H 0.110 0.890 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.107 0.893 47 H 0.115 0.885 48 H 0.219 0.781 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.065 2.644 4.765 13.239 hybrid contribution -1.568 0.175 -1.496 2.174 sum 10.497 2.819 3.268 11.350 Atomic orbital electron populations 1.21765 0.95525 0.99772 1.03319 1.22055 0.97146 0.98088 1.00102 1.20583 0.89430 0.93190 0.91625 0.92694 1.21829 0.96166 0.81593 1.01601 1.46060 1.06485 1.11633 1.71039 1.20094 0.83376 0.89398 0.78167 1.90741 1.55815 1.44816 1.48261 1.21675 0.97706 0.87086 0.86039 1.48710 1.09421 1.34898 1.16632 1.27769 0.89159 0.96894 0.99755 1.75046 1.16654 1.18596 1.04509 1.78639 0.94973 1.13430 1.20599 1.78825 1.22358 1.11417 0.94321 1.22108 1.03582 0.98330 0.92745 1.21566 0.96228 0.94970 1.03051 1.21621 0.95360 1.01529 0.97597 1.21682 1.01530 0.95177 0.97909 1.21598 0.88091 0.98687 1.05333 1.42457 1.16891 1.65922 1.11140 1.19206 0.92010 1.27803 0.98129 0.90816 1.24708 0.98046 1.01395 0.96252 1.69648 1.35241 1.48797 1.04006 0.86283 0.84128 0.79382 0.76964 1.21599 1.21840 1.20693 0.94781 0.94064 0.89605 0.92425 0.93825 0.91464 0.91108 0.75542 0.75090 0.87581 0.89050 0.92203 0.90029 0.91457 0.91231 0.90924 0.90676 0.89333 0.88528 0.78142 0.93413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.18 37.15 0.34 -2.11 16 2 C -0.13 -2.11 5.61 -26.74 -0.15 -2.26 16 3 C 0.16 2.69 2.59 -67.93 -0.18 2.51 16 4 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 5 C 0.11 1.67 5.23 -4.04 -0.02 1.65 16 6 N -0.70 -9.92 5.15 -60.29 -0.31 -10.24 16 7 C 0.51 7.21 6.73 -10.98 -0.07 7.13 16 8 O -0.52 -8.75 15.98 5.55 0.09 -8.66 16 9 C 0.16 1.88 0.69 -132.97 -0.09 1.79 16 10 N -0.29 -3.71 2.27 -50.88 -0.12 -3.82 16 11 C 0.16 2.10 10.33 -90.38 -0.93 1.16 16 12 N -0.30 -4.62 12.36 29.59 0.37 -4.25 16 13 N -0.08 -1.32 13.43 60.35 0.81 -0.51 16 14 N -0.08 -1.21 10.60 60.35 0.64 -0.57 16 15 C -0.13 -1.30 4.33 -26.73 -0.12 -1.42 16 16 C -0.12 -1.10 5.75 -26.73 -0.15 -1.26 16 17 C -0.12 -1.02 5.92 -26.72 -0.16 -1.18 16 18 C -0.13 -1.18 5.71 -26.71 -0.15 -1.33 16 19 C -0.10 -1.07 3.70 -26.71 -0.10 -1.16 16 20 N -0.72 -14.58 4.51 -53.43 -0.24 -14.82 16 21 C -0.24 -5.56 7.75 -15.06 -0.12 -5.68 16 22 H 0.07 1.70 7.32 -52.49 -0.38 1.32 16 23 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 24 N -0.93 -24.40 13.06 55.49 0.72 -23.68 16 25 Si 0.90 20.20 29.55 -169.99 -5.02 15.18 16 26 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 1.70 5.99 -51.92 -0.31 1.39 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 34 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.41 5.69 5.88 -40.82 -0.24 5.45 16 37 H 0.23 2.44 6.91 -52.49 -0.36 2.07 16 38 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.09 0.97 6.84 -51.93 -0.36 0.61 16 40 H 0.06 0.62 7.08 -51.93 -0.37 0.25 16 41 H 0.08 0.69 8.14 -51.92 -0.42 0.26 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.81 6.15 -51.93 -0.32 0.49 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 1.08 8.00 -51.93 -0.42 0.66 16 47 H 0.10 0.97 8.10 -51.93 -0.42 0.55 16 48 H 0.38 8.46 7.80 -40.82 -0.32 8.14 16 49 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 383.27 15.07 5.78 5.78 Total: -1.00 -28.06 383.27 -6.98 -35.04 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -7.70 Total: 12.98 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -2.00 Total: -2.43 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: 1.87 Total: -57.89 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.09 Total: -8.66 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -28.06 -6.98 -35.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481838362.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.820 kcal (2) G-P(sol) polarization free energy of solvation -28.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds