Wall clock time and date at job start Tue Mar 31 2020 20:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47404 * 2 1 4 4 H 1.09002 * 109.47153 * 54.99686 * 3 2 1 5 5 C 1.53000 * 109.47060 * 175.00005 * 3 2 1 6 6 N 1.46507 * 109.46803 * 175.00213 * 5 3 2 7 7 C 1.34773 * 119.99647 * 179.97438 * 6 5 3 8 8 O 1.21284 * 120.00340 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99967 * 179.97438 * 7 6 5 10 10 N 1.46505 * 109.46765 * 60.00308 * 9 7 6 11 11 C 1.34602 * 126.43236 * 284.71287 * 10 9 7 12 12 N 1.31080 * 106.67291 * 179.87962 * 11 10 9 13 13 N 1.28843 * 107.99230 * 0.38394 * 12 11 10 14 14 N 1.28738 * 109.39540 * 359.75265 * 13 12 11 15 15 C 1.53001 * 109.46993 * 300.00484 * 9 7 6 16 16 C 1.52997 * 109.46695 * 179.97438 * 15 9 7 17 17 C 1.53008 * 109.47255 * 59.99990 * 16 15 9 18 18 C 1.53005 * 109.46774 * 299.99561 * 17 16 15 19 19 C 1.52997 * 109.47267 * 179.97438 * 9 7 6 20 20 N 1.46500 * 109.47007 * 294.99774 * 3 2 1 21 21 C 1.36933 * 119.99983 * 84.99832 * 20 3 2 22 22 H 1.08002 * 120.00189 * 0.02562 * 21 20 3 23 23 C 1.38812 * 120.00422 * 179.97438 * 21 20 3 24 24 N 1.31623 * 119.99438 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00488 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47149 * 89.99897 * 25 23 21 27 27 H 1.48501 * 109.46970 * 210.00013 * 25 23 21 28 28 H 1.48501 * 109.47193 * 329.99772 * 25 23 21 29 29 H 1.08996 * 109.47654 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47476 * 300.00087 * 1 2 3 31 31 H 1.09008 * 109.46970 * 60.00049 * 1 2 3 32 32 H 1.09000 * 109.47017 * 239.99643 * 2 1 3 33 33 H 1.09008 * 109.46970 * 119.99951 * 2 1 3 34 34 H 1.09008 * 109.47142 * 294.99397 * 5 3 2 35 35 H 1.08990 * 109.47170 * 54.99895 * 5 3 2 36 36 H 0.96994 * 119.99737 * 359.97438 * 6 5 3 37 37 H 1.07994 * 126.66671 * 0.02562 * 11 10 9 38 38 H 1.09001 * 109.46580 * 299.99174 * 15 9 7 39 39 H 1.08992 * 109.47123 * 59.99764 * 15 9 7 40 40 H 1.09000 * 109.47346 * 299.99867 * 16 15 9 41 41 H 1.09007 * 109.46964 * 179.97438 * 16 15 9 42 42 H 1.09001 * 109.47171 * 179.97438 * 17 16 15 43 43 H 1.09000 * 109.47044 * 59.99692 * 17 16 15 44 44 H 1.09001 * 109.46919 * 299.99878 * 18 17 16 45 45 H 1.09000 * 109.46490 * 180.02562 * 18 17 16 46 46 H 1.09003 * 109.47165 * 300.00552 * 19 9 7 47 47 H 1.09000 * 109.46818 * 60.00293 * 19 9 7 48 48 H 0.96997 * 120.00274 * 264.99726 * 20 3 2 49 49 H 0.97001 * 120.00131 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4442 0.1257 6 7 4.0631 2.8167 0.0060 7 6 5.3857 3.0629 0.0869 8 8 6.1634 2.1482 0.2583 9 6 5.8983 4.4747 -0.0368 10 7 5.3191 5.2994 1.0265 11 6 4.0587 5.7691 1.0770 12 7 3.9567 6.4533 2.1904 13 7 5.0973 6.4130 2.7882 14 7 5.9228 5.7166 2.0876 15 6 5.4988 5.0447 -1.3993 16 6 6.0187 6.4782 -1.5246 17 6 7.5435 6.4806 -1.3980 18 6 7.9429 5.9105 -0.0354 19 6 7.4230 4.4766 0.0903 20 7 1.6525 2.0974 -1.2518 21 6 0.4157 2.6734 -1.3689 22 1 -0.2739 2.6452 -0.5382 23 6 0.0487 3.2945 -2.5548 24 7 0.8897 3.3301 -3.5666 25 14 -1.6382 4.0808 -2.7143 26 1 -1.5655 5.5000 -2.2832 27 1 -2.0830 4.0155 -4.1296 28 1 -2.6071 3.3521 -1.8568 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8901 34 1 3.8499 1.0376 1.0961 35 1 3.9953 0.8310 -0.6658 36 1 3.4411 3.5482 -0.1315 37 1 3.2816 5.6108 0.3439 38 1 5.9298 4.4311 -2.1904 39 1 4.4126 5.0434 -1.4893 40 1 5.5875 7.0916 -0.7335 41 1 5.7345 6.8842 -2.4955 42 1 7.9140 7.5018 -1.4877 43 1 7.9748 5.8672 -2.1891 44 1 7.5117 6.5240 0.7556 45 1 9.0292 5.9127 0.0549 46 1 7.7072 4.0706 1.0611 47 1 7.8542 3.8629 -0.7006 48 1 2.2720 2.1231 -1.9978 49 1 0.6332 3.7638 -4.3955 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481838362.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:25 Heat of formation + Delta-G solvation = 64.083223 kcal Electronic energy + Delta-G solvation = -31368.976059 eV Core-core repulsion = 27368.001117 eV Total energy + Delta-G solvation = -4000.974942 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -45.44168 -41.71457 -39.35130 -38.24951 -35.79834 -35.36995 -34.23797 -33.65424 -31.90878 -31.79860 -31.43673 -29.44883 -26.15633 -25.64922 -25.02125 -24.55942 -23.64592 -23.28979 -21.85327 -21.33527 -21.29969 -19.45402 -18.83831 -18.43025 -17.57025 -17.23787 -17.01482 -16.75807 -16.10796 -15.90663 -15.65705 -15.35014 -15.27395 -14.92753 -14.64256 -14.53908 -14.29667 -14.05716 -13.90100 -13.76943 -13.46973 -13.40496 -13.11170 -12.99782 -12.80105 -12.73626 -12.61954 -12.36665 -12.27163 -12.24506 -12.12266 -11.87951 -11.78840 -11.66258 -11.62186 -11.44659 -11.32350 -11.28734 -10.94378 -10.79850 -10.26087 -8.95228 -7.85274 -5.11423 0.08788 0.48944 1.10960 1.48477 1.52389 1.57066 1.60566 1.85939 2.61954 2.81071 3.16948 3.23666 3.37232 3.49652 3.61598 3.85143 3.89726 3.91685 3.98181 4.02207 4.16833 4.24916 4.31338 4.33857 4.43743 4.46909 4.53333 4.55161 4.63574 4.67943 4.80729 4.86237 4.91691 4.98148 5.02230 5.05042 5.08038 5.10045 5.19222 5.20651 5.22330 5.31366 5.41789 5.53646 5.66074 5.72001 6.22182 6.35282 6.82784 7.45258 7.46128 8.13297 8.40545 9.36640 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.004110 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.863894 B = 6811.143900 C = 7474.452438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.165 3.835 4 H 0.055 0.945 5 C 0.120 3.880 6 N -0.699 5.699 7 C 0.509 3.491 8 O -0.547 6.547 9 C 0.167 3.833 10 N -0.286 5.286 11 C 0.170 3.830 12 N -0.322 5.322 13 N -0.104 5.104 14 N -0.085 5.085 15 C -0.126 4.126 16 C -0.117 4.117 17 C -0.120 4.120 18 C -0.120 4.120 19 C -0.098 4.098 20 N -0.723 5.723 21 C -0.217 4.217 22 H 0.076 0.924 23 C -0.059 4.059 24 N -0.959 5.959 25 Si 0.948 3.052 26 H -0.289 1.289 27 H -0.306 1.306 28 H -0.278 1.278 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.409 0.591 37 H 0.253 0.747 38 H 0.116 0.884 39 H 0.086 0.914 40 H 0.046 0.954 41 H 0.092 0.908 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.053 0.947 45 H 0.090 0.910 46 H 0.072 0.928 47 H 0.107 0.893 48 H 0.376 0.624 49 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.711 2.471 3.599 12.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C 0.056 3.944 4 H 0.073 0.927 5 C -0.005 4.005 6 N -0.350 5.350 7 C 0.291 3.709 8 O -0.424 6.424 9 C 0.081 3.919 10 N -0.089 5.089 11 C -0.128 4.128 12 N -0.170 5.170 13 N -0.098 5.098 14 N -0.072 5.072 15 C -0.165 4.165 16 C -0.155 4.155 17 C -0.158 4.158 18 C -0.158 4.158 19 C -0.136 4.136 20 N -0.365 5.365 21 C -0.348 4.348 22 H 0.094 0.906 23 C -0.252 4.252 24 N -0.610 5.610 25 Si 0.780 3.220 26 H -0.216 1.216 27 H -0.234 1.234 28 H -0.203 1.203 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.246 0.754 37 H 0.269 0.731 38 H 0.134 0.866 39 H 0.105 0.895 40 H 0.065 0.935 41 H 0.111 0.889 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.072 0.928 45 H 0.109 0.891 46 H 0.090 0.910 47 H 0.125 0.875 48 H 0.209 0.791 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 12.540 2.387 5.009 13.713 hybrid contribution -1.706 0.149 -1.490 2.270 sum 10.834 2.535 3.519 11.670 Atomic orbital electron populations 1.21696 0.96055 1.00529 1.01791 1.21987 0.96560 0.97366 1.01112 1.20678 0.90564 0.93397 0.89788 0.92658 1.21704 0.94741 0.82044 1.01964 1.46044 1.06698 1.11420 1.70858 1.20441 0.82967 0.90174 0.77287 1.90730 1.56332 1.45917 1.49406 1.21751 0.98202 0.85512 0.86465 1.48759 1.09302 1.34526 1.16358 1.28101 0.89479 0.95879 0.99349 1.74994 1.16799 1.19652 1.05530 1.78624 0.95410 1.14422 1.21385 1.78793 1.22394 1.11293 0.94673 1.22147 1.03412 0.99136 0.91756 1.21555 0.96875 0.93862 1.03161 1.21624 0.94628 1.02342 0.97167 1.21646 1.02310 0.93756 0.98048 1.21631 0.87332 0.99797 1.04808 1.42503 1.15821 1.65993 1.12135 1.19396 0.92593 1.25438 0.97415 0.90649 1.25171 1.00147 1.03244 0.96647 1.69752 1.36346 1.50690 1.04191 0.85528 0.81931 0.78729 0.75862 1.21646 1.23381 1.20325 0.93033 0.93513 0.92998 0.93126 0.91055 0.90438 0.91571 0.75351 0.73086 0.86626 0.89527 0.93515 0.88904 0.90501 0.89786 0.92806 0.89148 0.90963 0.87492 0.79121 0.94348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.51 9.18 71.98 0.66 -3.85 16 2 C -0.13 -3.82 5.61 30.59 0.17 -3.65 16 3 C 0.16 5.17 2.59 44.99 0.12 5.29 16 4 H 0.06 1.77 8.08 -2.39 -0.02 1.75 16 5 C 0.12 3.37 5.23 86.38 0.45 3.82 16 6 N -0.70 -18.90 5.15 -463.04 -2.38 -21.29 16 7 C 0.51 13.84 6.73 87.66 0.59 14.42 16 8 O -0.55 -17.79 15.98 -3.04 -0.05 -17.84 16 9 C 0.17 3.68 0.69 2.86 0.00 3.68 16 10 N -0.29 -7.00 2.27 -314.90 -0.71 -7.71 16 11 C 0.17 4.24 10.33 180.26 1.86 6.10 16 12 N -0.32 -9.77 12.36 -60.29 -0.74 -10.51 16 13 N -0.10 -3.33 13.43 37.01 0.50 -2.83 16 14 N -0.09 -2.44 10.60 37.02 0.39 -2.05 16 15 C -0.13 -2.34 4.33 30.59 0.13 -2.21 16 16 C -0.12 -1.92 5.75 30.60 0.18 -1.74 16 17 C -0.12 -1.71 5.92 30.60 0.18 -1.53 16 18 C -0.12 -2.05 5.71 30.61 0.17 -1.88 16 19 C -0.10 -1.97 3.70 30.61 0.11 -1.86 16 20 N -0.72 -28.52 4.51 -322.94 -1.46 -29.98 16 21 C -0.22 -9.81 7.75 84.03 0.65 -9.16 16 22 H 0.08 3.37 7.32 -2.91 -0.02 3.35 16 23 C -0.06 -2.90 5.50 84.86 0.47 -2.44 16 24 N -0.96 -50.52 13.06 21.65 0.28 -50.23 16 25 Si 0.95 41.45 29.55 68.60 2.03 43.48 16 26 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 27 H -0.31 -14.03 7.11 99.48 0.71 -13.33 16 28 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 29 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.05 1.99 5.99 -2.38 -0.01 1.97 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 35 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.41 10.90 5.88 -92.71 -0.55 10.35 16 37 H 0.25 4.97 6.91 -2.91 -0.02 4.95 16 38 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.09 1.71 6.84 -2.39 -0.02 1.70 16 40 H 0.05 0.90 7.08 -2.39 -0.02 0.88 16 41 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 42 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.05 1.15 6.15 -2.39 -0.01 1.13 16 45 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.07 1.71 8.00 -2.39 -0.02 1.69 16 47 H 0.11 1.96 8.10 -2.39 -0.02 1.94 16 48 H 0.38 16.32 7.80 -92.71 -0.72 15.60 16 49 H 0.25 13.05 8.31 -92.71 -0.77 12.28 16 Total: -1.00 -59.37 383.27 3.31 -56.06 By element: Atomic # 1 Polarization: 38.19 SS G_CDS: -0.29 Total: 37.90 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 5.75 Total: 5.01 kcal Atomic # 7 Polarization: -120.47 SS G_CDS: -4.13 Total: -124.60 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.05 Total: -17.84 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -59.37 3.31 -56.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481838362.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.140 kcal (2) G-P(sol) polarization free energy of solvation -59.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds