Wall clock time and date at job start Tue Mar 31 2020 19:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47625 * 2 1 4 4 C 1.50703 * 109.47203 * 119.99603 * 2 1 3 5 5 N 1.31077 * 126.65911 * 300.17700 * 4 2 1 6 6 N 1.28842 * 107.98922 * 180.24142 * 5 4 2 7 7 N 1.28744 * 109.39807 * 359.74289 * 6 5 4 8 8 N 1.29021 * 108.80684 * 0.02562 * 7 6 5 9 9 C 1.46495 * 126.43706 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47254 * 90.02008 * 9 8 7 11 11 O 1.21280 * 120.00049 * 359.97438 * 10 9 8 12 12 N 1.34784 * 120.00069 * 180.02562 * 10 9 8 13 13 C 1.46496 * 119.99723 * 174.55677 * 12 10 9 14 14 C 1.53002 * 110.43741 * 302.99269 * 13 12 10 15 15 N 1.46499 * 109.47300 * 307.77146 * 14 13 12 16 16 C 1.36932 * 119.99928 * 174.95491 * 15 14 13 17 17 H 1.07999 * 120.00133 * 359.97438 * 16 15 14 18 18 C 1.38810 * 119.99800 * 179.97438 * 16 15 14 19 19 N 1.31615 * 120.00483 * 0.02562 * 18 16 15 20 20 Si 1.86809 * 119.99949 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46956 * 60.00009 * 20 18 16 22 22 H 1.48503 * 109.46844 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47182 * 300.00113 * 20 18 16 24 24 C 1.54889 * 110.48425 * 180.45433 * 13 12 10 25 25 C 1.55234 * 102.59053 * 279.19051 * 24 13 12 26 26 C 1.54267 * 104.22999 * 322.08116 * 25 24 13 27 27 C 1.53870 * 106.59852 * 23.61091 * 26 25 24 28 28 H 1.09008 * 109.47393 * 300.00913 * 1 2 3 29 29 H 1.09008 * 109.47104 * 60.00394 * 1 2 3 30 30 H 1.08996 * 109.47740 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47411 * 239.99092 * 2 1 3 32 32 H 1.08997 * 109.47444 * 180.02562 * 3 2 1 33 33 H 1.09008 * 109.46558 * 299.99940 * 3 2 1 34 34 H 1.08998 * 109.47467 * 59.99127 * 3 2 1 35 35 H 1.09003 * 109.47289 * 210.02328 * 9 8 7 36 36 H 1.09006 * 109.47421 * 330.02072 * 9 8 7 37 37 H 0.96999 * 119.99567 * 354.55549 * 12 10 9 38 38 H 1.09009 * 109.46522 * 67.76859 * 14 13 12 39 39 H 1.08995 * 109.47547 * 187.76358 * 14 13 12 40 40 H 0.97001 * 119.99439 * 354.94456 * 15 14 13 41 41 H 0.97003 * 120.00830 * 179.97438 * 19 18 16 42 42 H 1.09009 * 110.75703 * 37.58205 * 24 13 12 43 43 H 1.09004 * 110.76100 * 160.94682 * 24 13 12 44 44 H 1.08999 * 110.46676 * 203.39541 * 25 24 13 45 45 H 1.08995 * 110.47071 * 80.77283 * 25 24 13 46 46 H 1.09002 * 110.03578 * 264.32972 * 26 25 24 47 47 H 1.08996 * 110.03489 * 142.89417 * 26 25 24 48 48 H 1.08995 * 110.03772 * 240.71422 * 27 26 25 49 49 H 1.09005 * 110.03491 * 119.27988 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7948 -0.3800 2.4766 6 7 2.4014 -1.2266 3.2351 7 7 3.0152 -2.0916 2.5053 8 7 2.8094 -1.8088 1.2634 9 6 3.3286 -2.5422 0.1065 10 6 2.3497 -3.6184 -0.2867 11 8 1.3200 -3.7593 0.3382 12 7 2.6191 -4.4252 -1.3324 13 6 1.7277 -5.5459 -1.6415 14 6 1.5969 -6.4738 -0.4320 15 7 2.9312 -6.8519 0.0400 16 6 3.0681 -7.5981 1.1800 17 1 2.1925 -7.9074 1.7314 18 6 4.3324 -7.9568 1.6269 19 7 5.3995 -7.5794 0.9553 20 14 4.5193 -8.9741 3.1825 21 1 3.8172 -10.2715 3.0128 22 1 5.9605 -9.2207 3.4425 23 1 3.9289 -8.2381 4.3292 24 6 2.2486 -6.3293 -2.8719 25 6 1.7502 -5.4636 -4.0601 26 6 0.3557 -4.9763 -3.6156 27 6 0.3414 -5.0287 -2.0778 28 1 -0.3634 0.5140 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5140 -0.8899 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9564 0.8899 35 1 3.4668 -1.8543 -0.7277 36 1 4.2850 -2.9975 0.3641 37 1 3.4032 -4.2636 -1.8801 38 1 1.0620 -5.9578 0.3655 39 1 1.0456 -7.3692 -0.7190 40 1 3.7176 -6.5739 -0.4552 41 1 6.2831 -7.8298 1.2678 42 1 3.3372 -6.3856 -2.8616 43 1 1.8097 -7.3264 -2.9093 44 1 1.6731 -6.0665 -4.9649 45 1 2.4170 -4.6165 -4.2207 46 1 -0.4154 -5.6330 -4.0186 47 1 0.1913 -3.9540 -3.9558 48 1 -0.4365 -5.7106 -1.7346 49 1 0.1702 -4.0316 -1.6718 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481910327.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:48 Heat of formation + Delta-G solvation = 83.680471 kcal Electronic energy + Delta-G solvation = -31032.416151 eV Core-core repulsion = 27032.291009 eV Total energy + Delta-G solvation = -4000.125142 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.04770 -40.32933 -37.91941 -36.28359 -35.20584 -34.39091 -33.35469 -31.45894 -31.12434 -29.32377 -28.71816 -27.82439 -27.47681 -24.58455 -24.38717 -23.41622 -22.27497 -21.43334 -20.61541 -20.39277 -19.25366 -17.88965 -17.60576 -17.12270 -16.19201 -16.02751 -15.71499 -15.40925 -14.93390 -14.67367 -14.63204 -14.22201 -13.83919 -13.49291 -13.48117 -13.18915 -13.03065 -12.84638 -12.61578 -12.46926 -12.22828 -12.02057 -11.82510 -11.59889 -11.53174 -11.41789 -11.37737 -11.26707 -11.13221 -11.03007 -10.88060 -10.80669 -10.76052 -10.50925 -10.44333 -10.07674 -9.92788 -9.72370 -9.58181 -8.83565 -8.80558 -6.89613 -5.76622 -3.03033 1.32596 1.91413 2.41176 2.58001 3.19185 3.47595 3.51427 3.54394 3.80549 4.13243 4.32288 4.45093 4.57568 4.66806 4.70088 4.71767 4.76983 4.87656 4.89060 5.07419 5.33589 5.38676 5.43874 5.47471 5.50099 5.53448 5.59672 5.60680 5.62733 5.62976 5.77840 5.82663 5.86150 5.89757 5.92011 6.01930 6.08450 6.16402 6.18189 6.19852 6.31481 6.41881 6.48362 6.77855 6.94632 7.55434 7.73314 8.24503 8.42989 8.78564 9.55328 10.09973 10.46243 11.46437 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.009124 B = 0.004686 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3068.084594 B = 5974.175912 C = 8306.476084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.008 4.008 3 C -0.143 4.143 4 C 0.192 3.808 5 N -0.304 5.304 6 N -0.080 5.080 7 N -0.069 5.069 8 N -0.287 5.287 9 C 0.089 3.911 10 C 0.513 3.487 11 O -0.511 6.511 12 N -0.698 5.698 13 C 0.171 3.829 14 C 0.144 3.856 15 N -0.724 5.724 16 C -0.233 4.233 17 H 0.067 0.933 18 C -0.011 4.011 19 N -0.937 5.937 20 Si 0.904 3.096 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.285 1.285 24 C -0.119 4.119 25 C -0.125 4.125 26 C -0.122 4.122 27 C -0.123 4.123 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.132 0.868 36 H 0.146 0.854 37 H 0.399 0.601 38 H 0.043 0.957 39 H 0.022 0.978 40 H 0.381 0.619 41 H 0.254 0.746 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.058 0.942 48 H 0.072 0.928 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.120 15.463 -14.819 22.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.030 4.030 3 C -0.201 4.201 4 C -0.086 4.086 5 N -0.153 5.153 6 N -0.073 5.073 7 N -0.055 5.055 8 N -0.088 5.088 9 C -0.037 4.037 10 C 0.296 3.704 11 O -0.385 6.385 12 N -0.350 5.350 13 C 0.086 3.914 14 C 0.016 3.984 15 N -0.368 5.368 16 C -0.364 4.364 17 H 0.085 0.915 18 C -0.207 4.207 19 N -0.586 5.586 20 Si 0.735 3.265 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.157 4.157 25 C -0.163 4.163 26 C -0.160 4.160 27 C -0.162 4.162 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.150 0.850 36 H 0.164 0.836 37 H 0.233 0.767 38 H 0.061 0.939 39 H 0.040 0.960 40 H 0.214 0.786 41 H 0.064 0.936 42 H 0.096 0.904 43 H 0.104 0.896 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.091 0.909 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.789 15.069 -12.743 20.870 hybrid contribution 0.985 -0.722 -0.431 1.295 sum -5.804 14.347 -13.174 20.325 Atomic orbital electron populations 1.21816 0.91922 1.03255 1.03134 1.19723 0.97719 0.95829 0.89688 1.21846 1.01218 0.93583 1.03500 1.25982 0.95424 0.89283 0.97889 1.74887 1.19878 1.22165 0.98339 1.78620 1.07136 0.99096 1.22458 1.79067 1.19471 1.19807 0.87121 1.47847 1.34292 1.19684 1.06967 1.22040 1.00190 0.95536 0.85911 1.19932 0.86961 0.82658 0.80879 1.90774 1.25901 1.70051 1.51793 1.45640 1.29023 1.29830 1.30512 1.21441 0.88892 0.85320 0.95769 1.21063 0.90060 0.93916 0.93344 1.42151 1.01343 1.63952 1.29382 1.19157 0.92231 1.24345 1.00641 0.91515 1.24635 0.95366 1.01560 0.99118 1.69612 0.97146 1.51200 1.40690 0.86303 0.76541 0.80104 0.83529 1.21362 1.21692 1.21205 1.22806 1.01671 0.99008 0.92166 1.22467 0.96438 0.99233 0.98144 1.22135 0.97354 1.00690 0.95821 1.22443 0.96666 1.02379 0.94750 0.91124 0.91151 0.91830 0.89336 0.92404 0.90983 0.90975 0.85022 0.83593 0.76726 0.93912 0.96018 0.78551 0.93639 0.90398 0.89592 0.91661 0.91910 0.91955 0.92306 0.90909 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.17 37.15 0.34 -0.95 16 2 C -0.01 -0.07 3.26 -91.78 -0.30 -0.37 16 3 C -0.14 -1.02 9.18 37.16 0.34 -0.68 16 4 C 0.19 2.67 6.64 -155.43 -1.03 1.64 16 5 N -0.30 -5.15 12.36 32.70 0.40 -4.75 16 6 N -0.08 -1.55 13.43 60.35 0.81 -0.74 16 7 N -0.07 -1.34 13.29 60.35 0.80 -0.54 16 8 N -0.29 -4.37 2.83 -59.44 -0.17 -4.54 16 9 C 0.09 1.04 6.57 -5.20 -0.03 1.00 16 10 C 0.51 7.55 7.14 -10.98 -0.08 7.47 16 11 O -0.51 -9.74 13.39 5.56 0.07 -9.67 16 12 N -0.70 -8.95 4.54 -46.07 -0.21 -9.16 16 13 C 0.17 2.47 0.39 -130.16 -0.05 2.42 16 14 C 0.14 2.92 4.72 -4.04 -0.02 2.90 16 15 N -0.72 -17.62 5.30 -59.91 -0.32 -17.93 16 16 C -0.23 -6.58 9.99 -15.06 -0.15 -6.73 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 18 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 19 N -0.94 -27.58 13.06 55.49 0.72 -26.86 16 20 Si 0.90 23.08 29.55 -169.99 -5.02 18.05 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 22 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 C -0.12 -1.48 5.67 -24.55 -0.14 -1.62 16 25 C -0.13 -1.17 6.80 -24.88 -0.17 -1.34 16 26 C -0.12 -1.19 6.80 -25.62 -0.17 -1.36 16 27 C -0.12 -1.57 5.68 -25.61 -0.15 -1.72 16 28 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 29 H 0.07 0.45 8.14 -51.92 -0.42 0.02 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 0.60 6.84 -51.93 -0.36 0.25 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.13 0.79 7.12 -51.93 -0.37 0.42 16 36 H 0.15 1.67 8.14 -51.93 -0.42 1.25 16 37 H 0.40 3.86 8.50 -40.82 -0.35 3.51 16 38 H 0.04 1.00 6.49 -51.92 -0.34 0.66 16 39 H 0.02 0.45 8.02 -51.93 -0.42 0.03 16 40 H 0.38 9.31 7.27 -40.82 -0.30 9.02 16 41 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.08 1.01 8.10 -51.92 -0.42 0.59 16 43 H 0.09 1.15 7.97 -51.93 -0.41 0.74 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.07 0.98 7.84 -51.93 -0.41 0.57 16 49 H 0.07 0.99 6.63 -51.93 -0.34 0.64 16 LS Contribution 397.07 15.07 5.98 5.98 Total: -1.00 -36.87 397.07 -6.53 -43.40 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -7.90 Total: 6.50 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -1.71 Total: 0.25 kcal Atomic # 7 Polarization: -66.56 SS G_CDS: 2.05 Total: -64.52 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.07 Total: -9.67 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.87 -6.53 -43.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481910327.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.078 kcal (2) G-P(sol) polarization free energy of solvation -36.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds