Wall clock time and date at job start Tue Mar 31 2020 19:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47625 * 2 1 4 4 C 1.50703 * 109.47203 * 119.99603 * 2 1 3 5 5 N 1.31077 * 126.65911 * 300.17700 * 4 2 1 6 6 N 1.28842 * 107.98922 * 180.24142 * 5 4 2 7 7 N 1.28744 * 109.39807 * 359.74289 * 6 5 4 8 8 N 1.29021 * 108.80684 * 0.02562 * 7 6 5 9 9 C 1.46495 * 126.43706 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47254 * 90.02008 * 9 8 7 11 11 O 1.21280 * 120.00049 * 359.97438 * 10 9 8 12 12 N 1.34784 * 120.00069 * 180.02562 * 10 9 8 13 13 C 1.46496 * 119.99723 * 174.55677 * 12 10 9 14 14 C 1.53002 * 110.43741 * 302.99269 * 13 12 10 15 15 N 1.46499 * 109.47300 * 307.77146 * 14 13 12 16 16 C 1.36932 * 119.99928 * 174.95491 * 15 14 13 17 17 H 1.07999 * 120.00133 * 359.97438 * 16 15 14 18 18 C 1.38810 * 119.99800 * 179.97438 * 16 15 14 19 19 N 1.31615 * 120.00483 * 0.02562 * 18 16 15 20 20 Si 1.86809 * 119.99949 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46956 * 60.00009 * 20 18 16 22 22 H 1.48503 * 109.46844 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47182 * 300.00113 * 20 18 16 24 24 C 1.54889 * 110.48425 * 180.45433 * 13 12 10 25 25 C 1.55234 * 102.59053 * 279.19051 * 24 13 12 26 26 C 1.54267 * 104.22999 * 322.08116 * 25 24 13 27 27 C 1.53870 * 106.59852 * 23.61091 * 26 25 24 28 28 H 1.09008 * 109.47393 * 300.00913 * 1 2 3 29 29 H 1.09008 * 109.47104 * 60.00394 * 1 2 3 30 30 H 1.08996 * 109.47740 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47411 * 239.99092 * 2 1 3 32 32 H 1.08997 * 109.47444 * 180.02562 * 3 2 1 33 33 H 1.09008 * 109.46558 * 299.99940 * 3 2 1 34 34 H 1.08998 * 109.47467 * 59.99127 * 3 2 1 35 35 H 1.09003 * 109.47289 * 210.02328 * 9 8 7 36 36 H 1.09006 * 109.47421 * 330.02072 * 9 8 7 37 37 H 0.96999 * 119.99567 * 354.55549 * 12 10 9 38 38 H 1.09009 * 109.46522 * 67.76859 * 14 13 12 39 39 H 1.08995 * 109.47547 * 187.76358 * 14 13 12 40 40 H 0.97001 * 119.99439 * 354.94456 * 15 14 13 41 41 H 0.97003 * 120.00830 * 179.97438 * 19 18 16 42 42 H 1.09009 * 110.75703 * 37.58205 * 24 13 12 43 43 H 1.09004 * 110.76100 * 160.94682 * 24 13 12 44 44 H 1.08999 * 110.46676 * 203.39541 * 25 24 13 45 45 H 1.08995 * 110.47071 * 80.77283 * 25 24 13 46 46 H 1.09002 * 110.03578 * 264.32972 * 26 25 24 47 47 H 1.08996 * 110.03489 * 142.89417 * 26 25 24 48 48 H 1.08995 * 110.03772 * 240.71422 * 27 26 25 49 49 H 1.09005 * 110.03491 * 119.27988 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7948 -0.3800 2.4766 6 7 2.4014 -1.2266 3.2351 7 7 3.0152 -2.0916 2.5053 8 7 2.8094 -1.8088 1.2634 9 6 3.3286 -2.5422 0.1065 10 6 2.3497 -3.6184 -0.2867 11 8 1.3200 -3.7593 0.3382 12 7 2.6191 -4.4252 -1.3324 13 6 1.7277 -5.5459 -1.6415 14 6 1.5969 -6.4738 -0.4320 15 7 2.9312 -6.8519 0.0400 16 6 3.0681 -7.5981 1.1800 17 1 2.1925 -7.9074 1.7314 18 6 4.3324 -7.9568 1.6269 19 7 5.3995 -7.5794 0.9553 20 14 4.5193 -8.9741 3.1825 21 1 3.8172 -10.2715 3.0128 22 1 5.9605 -9.2207 3.4425 23 1 3.9289 -8.2381 4.3292 24 6 2.2486 -6.3293 -2.8719 25 6 1.7502 -5.4636 -4.0601 26 6 0.3557 -4.9763 -3.6156 27 6 0.3414 -5.0287 -2.0778 28 1 -0.3634 0.5140 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5140 -0.8899 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9564 0.8899 35 1 3.4668 -1.8543 -0.7277 36 1 4.2850 -2.9975 0.3641 37 1 3.4032 -4.2636 -1.8801 38 1 1.0620 -5.9578 0.3655 39 1 1.0456 -7.3692 -0.7190 40 1 3.7176 -6.5739 -0.4552 41 1 6.2831 -7.8298 1.2678 42 1 3.3372 -6.3856 -2.8616 43 1 1.8097 -7.3264 -2.9093 44 1 1.6731 -6.0665 -4.9649 45 1 2.4170 -4.6165 -4.2207 46 1 -0.4154 -5.6330 -4.0186 47 1 0.1913 -3.9540 -3.9558 48 1 -0.4365 -5.7106 -1.7346 49 1 0.1702 -4.0316 -1.6718 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481910327.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:47 Heat of formation + Delta-G solvation = 56.411689 kcal Electronic energy + Delta-G solvation = -31033.598614 eV Core-core repulsion = 27032.291009 eV Total energy + Delta-G solvation = -4001.307605 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -45.27908 -41.50898 -39.06086 -37.12933 -36.37027 -36.21519 -34.57972 -33.12988 -32.50777 -30.59176 -29.68412 -29.14774 -28.09459 -26.33517 -25.44776 -24.66136 -24.01355 -22.49355 -21.55626 -21.31034 -20.50273 -19.20934 -19.02320 -18.65064 -17.38578 -17.21953 -16.77713 -16.56523 -16.34913 -15.93573 -15.60515 -15.45399 -15.12016 -15.10397 -14.56499 -14.39270 -14.17989 -14.06281 -13.80738 -13.71520 -13.24865 -13.14408 -13.07560 -12.85222 -12.71390 -12.54947 -12.46604 -12.37274 -12.28711 -12.25399 -12.24195 -12.05225 -11.90133 -11.88134 -11.79756 -11.67469 -11.25762 -11.15454 -11.03130 -10.69802 -10.02994 -8.98213 -7.99464 -5.24088 0.13437 0.86902 1.14363 1.40354 1.43773 1.44510 1.48687 2.11962 2.51688 2.90101 3.17698 3.32555 3.43130 3.56307 3.62011 3.71739 3.90708 3.94095 4.03788 4.07654 4.17536 4.20270 4.38581 4.41928 4.54283 4.60945 4.67014 4.69801 4.79220 4.82302 4.85326 4.87079 4.92134 4.93565 4.96386 5.07093 5.14721 5.16950 5.18580 5.30311 5.32988 5.36827 5.37210 5.43241 5.54902 5.65415 6.24317 6.49210 7.17492 7.33034 7.50287 8.05027 8.36149 9.22610 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.009124 B = 0.004686 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3068.084594 B = 5974.175912 C = 8306.476084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.009 4.009 3 C -0.138 4.138 4 C 0.207 3.793 5 N -0.329 5.329 6 N -0.111 5.111 7 N -0.113 5.113 8 N -0.287 5.287 9 C 0.086 3.914 10 C 0.508 3.492 11 O -0.561 6.561 12 N -0.685 5.685 13 C 0.176 3.824 14 C 0.146 3.854 15 N -0.724 5.724 16 C -0.246 4.246 17 H 0.054 0.946 18 C -0.058 4.058 19 N -0.955 5.955 20 Si 0.957 3.043 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.293 1.293 24 C -0.117 4.117 25 C -0.112 4.112 26 C -0.113 4.113 27 C -0.118 4.118 28 H 0.054 0.946 29 H 0.106 0.894 30 H 0.037 0.963 31 H 0.123 0.877 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.054 0.946 35 H 0.199 0.801 36 H 0.148 0.852 37 H 0.417 0.583 38 H 0.008 0.992 39 H 0.015 0.985 40 H 0.381 0.619 41 H 0.252 0.748 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.069 0.931 47 H 0.080 0.920 48 H 0.055 0.945 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.672 16.986 -18.484 25.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.030 4.030 3 C -0.196 4.196 4 C -0.070 4.070 5 N -0.178 5.178 6 N -0.104 5.104 7 N -0.099 5.099 8 N -0.087 5.087 9 C -0.038 4.038 10 C 0.292 3.708 11 O -0.439 6.439 12 N -0.337 5.337 13 C 0.089 3.911 14 C 0.018 3.982 15 N -0.368 5.368 16 C -0.379 4.379 17 H 0.072 0.928 18 C -0.251 4.251 19 N -0.605 5.605 20 Si 0.787 3.213 21 H -0.204 1.204 22 H -0.212 1.212 23 H -0.220 1.220 24 C -0.155 4.155 25 C -0.149 4.149 26 C -0.151 4.151 27 C -0.157 4.157 28 H 0.073 0.927 29 H 0.125 0.875 30 H 0.056 0.944 31 H 0.141 0.859 32 H 0.081 0.919 33 H 0.123 0.877 34 H 0.073 0.927 35 H 0.216 0.784 36 H 0.166 0.834 37 H 0.255 0.745 38 H 0.026 0.974 39 H 0.033 0.967 40 H 0.214 0.786 41 H 0.061 0.939 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.100 0.900 45 H 0.104 0.896 46 H 0.087 0.913 47 H 0.098 0.902 48 H 0.074 0.926 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.325 16.586 -16.456 24.206 hybrid contribution 0.750 -1.216 0.693 1.588 sum -5.575 15.370 -15.763 22.711 Atomic orbital electron populations 1.21811 0.91957 1.01841 1.04199 1.20160 0.97553 0.96954 0.88382 1.21853 1.01549 0.91959 1.04289 1.26944 0.93339 0.88259 0.98503 1.74795 1.20654 1.22547 0.99818 1.78559 1.08137 0.99952 1.23776 1.78960 1.20975 1.20802 0.89125 1.48055 1.34210 1.19985 1.06500 1.22467 0.98606 0.96141 0.86627 1.20487 0.86753 0.83109 0.80448 1.90770 1.28255 1.71534 1.53354 1.45500 1.29294 1.28590 1.30339 1.21285 0.90864 0.85126 0.93780 1.21099 0.87626 0.94612 0.94842 1.42150 1.02855 1.63387 1.28382 1.19375 0.91978 1.24686 1.01812 0.92810 1.25245 0.95238 1.02961 1.01672 1.69703 0.97140 1.52029 1.41660 0.85469 0.76529 0.79043 0.80270 1.20422 1.21186 1.21993 1.22770 1.01298 0.98788 0.92619 1.22432 0.96162 0.99448 0.96879 1.22099 0.98000 1.02293 0.92710 1.22370 0.94764 1.01162 0.97430 0.92688 0.87496 0.94401 0.85876 0.91872 0.87675 0.92720 0.78442 0.83382 0.74492 0.97445 0.96685 0.78604 0.93872 0.90778 0.90963 0.90011 0.89601 0.91253 0.90158 0.92621 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.17 71.98 0.66 -1.60 16 2 C -0.01 -0.14 3.26 -11.54 -0.04 -0.17 16 3 C -0.14 -1.50 9.18 71.98 0.66 -0.84 16 4 C 0.21 5.60 6.64 138.13 0.92 6.52 16 5 N -0.33 -11.45 12.36 -50.45 -0.62 -12.07 16 6 N -0.11 -4.52 13.43 37.01 0.50 -4.02 16 7 N -0.11 -4.51 13.29 37.02 0.49 -4.02 16 8 N -0.29 -8.61 2.83 -341.97 -0.97 -9.58 16 9 C 0.09 1.81 6.57 85.63 0.56 2.37 16 10 C 0.51 14.49 7.14 87.66 0.63 15.11 16 11 O -0.56 -21.94 13.39 -3.03 -0.04 -21.98 16 12 N -0.68 -16.41 4.54 -418.06 -1.90 -18.30 16 13 C 0.18 4.96 0.39 4.68 0.00 4.96 16 14 C 0.15 6.11 4.72 86.38 0.41 6.52 16 15 N -0.72 -36.06 5.30 -343.45 -1.82 -37.88 16 16 C -0.25 -14.30 9.99 84.03 0.84 -13.46 16 17 H 0.05 3.19 7.83 -2.91 -0.02 3.17 16 18 C -0.06 -3.35 5.50 84.86 0.47 -2.89 16 19 N -0.96 -56.40 13.06 21.65 0.28 -56.11 16 20 Si 0.96 48.03 29.55 68.60 2.03 50.05 16 21 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 22 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 23 H -0.29 -14.96 7.11 99.48 0.71 -14.25 16 24 C -0.12 -2.69 5.67 32.01 0.18 -2.51 16 25 C -0.11 -1.62 6.80 31.79 0.22 -1.41 16 26 C -0.11 -1.81 6.80 31.32 0.21 -1.59 16 27 C -0.12 -2.89 5.68 31.32 0.18 -2.71 16 28 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.12 1.04 6.84 -2.39 -0.02 1.02 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 34 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.20 1.38 7.12 -2.39 -0.02 1.36 16 36 H 0.15 3.16 8.14 -2.38 -0.02 3.14 16 37 H 0.42 6.78 8.50 -92.71 -0.79 5.99 16 38 H 0.01 0.37 6.49 -2.38 -0.02 0.36 16 39 H 0.02 0.66 8.02 -2.39 -0.02 0.64 16 40 H 0.38 18.76 7.27 -92.71 -0.67 18.08 16 41 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 42 H 0.07 1.77 8.10 -2.38 -0.02 1.75 16 43 H 0.07 1.87 7.97 -2.38 -0.02 1.85 16 44 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 45 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.05 1.52 7.84 -2.39 -0.02 1.50 16 49 H 0.06 1.67 6.63 -2.38 -0.02 1.66 16 Total: -1.00 -86.49 397.07 3.35 -83.14 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: -0.49 Total: 22.47 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 5.89 Total: 8.31 kcal Atomic # 7 Polarization: -137.94 SS G_CDS: -4.04 Total: -141.98 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.04 Total: -21.98 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.03 Total: 50.05 kcal Total: -86.49 3.35 -83.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481910327.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.547 kcal (2) G-P(sol) polarization free energy of solvation -86.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds