Wall clock time and date at job start Tue Mar 31 2020 20:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47271 * 2 1 4 4 C 1.53005 * 109.47121 * 240.00542 * 2 1 3 5 5 N 1.46499 * 109.47218 * 120.00288 * 2 1 3 6 6 N 1.28719 * 125.32017 * 359.97438 * 5 2 1 7 7 N 1.28984 * 108.98613 * 180.02562 * 6 5 2 8 8 C 1.34183 * 107.25556 * 0.02562 * 7 6 5 9 9 C 1.48006 * 126.70037 * 179.97438 * 8 7 6 10 10 O 1.21534 * 119.99701 * 180.02562 * 9 8 7 11 11 N 1.34775 * 119.99912 * 0.02562 * 9 8 7 12 12 C 1.46494 * 119.99984 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47157 * 175.61880 * 12 11 9 14 14 N 1.46498 * 110.54148 * 57.61957 * 13 12 11 15 15 C 1.36933 * 120.00105 * 59.23302 * 14 13 12 16 16 H 1.07999 * 120.00030 * 5.42936 * 15 14 13 17 17 C 1.38807 * 120.00236 * 185.43956 * 15 14 13 18 18 N 1.31617 * 120.00435 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99902 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47198 * 90.00269 * 19 17 15 21 21 H 1.48497 * 109.47332 * 210.00617 * 19 17 15 22 22 H 1.48501 * 109.47292 * 330.00763 * 19 17 15 23 23 C 1.54891 * 110.48661 * 180.23354 * 13 12 11 24 24 C 1.54891 * 102.75035 * 156.61710 * 23 13 12 25 25 C 1.54273 * 104.19570 * 322.06047 * 24 23 13 26 26 C 1.53872 * 106.59593 * 23.60465 * 25 24 23 27 27 N 1.28875 * 125.32083 * 180.28870 * 5 2 1 28 28 H 1.08994 * 109.47305 * 299.99558 * 1 2 3 29 29 H 1.08998 * 109.47250 * 59.99955 * 1 2 3 30 30 H 1.09005 * 109.47279 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47591 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47508 * 300.00777 * 3 2 1 33 33 H 1.09009 * 109.46910 * 60.00347 * 3 2 1 34 34 H 1.09004 * 109.46953 * 299.99615 * 4 2 1 35 35 H 1.08998 * 109.47464 * 59.99634 * 4 2 1 36 36 H 1.08997 * 109.47040 * 180.02562 * 4 2 1 37 37 H 0.96997 * 119.99888 * 0.02562 * 11 9 8 38 38 H 1.09001 * 109.47434 * 55.61418 * 12 11 9 39 39 H 1.09000 * 109.47261 * 295.61518 * 12 11 9 40 40 H 0.96997 * 119.99859 * 239.22503 * 14 13 12 41 41 H 0.97005 * 120.00055 * 179.97438 * 18 17 15 42 42 H 1.08993 * 110.75727 * 274.93225 * 23 13 12 43 43 H 1.09000 * 110.75921 * 38.30588 * 23 13 12 44 44 H 1.08998 * 110.48936 * 203.38272 * 24 23 13 45 45 H 1.08998 * 110.48872 * 80.73186 * 24 23 13 46 46 H 1.09003 * 110.02934 * 264.32397 * 25 24 23 47 47 H 1.08997 * 110.03462 * 142.89377 * 25 24 23 48 48 H 1.09002 * 110.03554 * 240.71641 * 26 25 24 49 49 H 1.09009 * 110.02819 * 119.29099 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6907 1.1961 6 7 1.2762 -1.2162 2.1071 7 7 2.0308 -1.7389 3.0132 8 6 3.3029 -1.5252 2.6437 9 6 4.5190 -1.9461 3.3748 10 8 5.6182 -1.6863 2.9261 11 7 4.4074 -2.6176 4.5380 12 6 5.6111 -3.0337 5.2619 13 6 5.2102 -3.6747 6.5921 14 7 4.3181 -4.8143 6.3653 15 6 4.7389 -5.8727 5.6052 16 1 5.7568 -5.9085 5.2459 17 6 3.8574 -6.8993 5.2961 18 7 4.2617 -7.9164 4.5650 19 14 2.0969 -6.8376 5.9179 20 1 1.2444 -6.1404 4.9218 21 1 1.5940 -8.2203 6.1185 22 1 2.0529 -6.1029 7.2076 23 6 6.4673 -4.1188 7.3805 24 6 5.9595 -4.1514 8.8434 25 6 5.0116 -2.9382 8.9420 26 6 4.5353 -2.6351 7.5106 27 7 3.2580 -0.8621 1.5036 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6766 -1.7489 -1.2494 35 1 1.6766 -0.2073 -2.1393 36 1 3.1299 -0.7215 -1.2491 37 1 3.5301 -2.8252 4.8959 38 1 6.2395 -2.1637 5.4526 39 1 6.1639 -3.7568 4.6623 40 1 3.4293 -4.8193 6.7538 41 1 3.6457 -8.6340 4.3494 42 1 6.7928 -5.1091 7.0625 43 1 7.2714 -3.3917 7.2669 44 1 6.7918 -4.0426 9.5387 45 1 5.4166 -5.0762 9.0383 46 1 5.5459 -2.0789 9.3475 47 1 4.1588 -3.1811 9.5758 48 1 4.8384 -1.6288 7.2214 49 1 3.4512 -2.7310 7.4497 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482219302.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:50 Heat of formation + Delta-G solvation = 97.265039 kcal Electronic energy + Delta-G solvation = -30136.394120 eV Core-core repulsion = 26136.858050 eV Total energy + Delta-G solvation = -3999.536071 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.39741 -39.50578 -38.26569 -37.78307 -34.31441 -33.52280 -33.25692 -32.45352 -30.88786 -28.60439 -28.30164 -28.02033 -27.99783 -25.69828 -24.51973 -23.73096 -22.95352 -20.97742 -20.58946 -19.85524 -18.87505 -17.76988 -17.53725 -17.39685 -16.84686 -15.77185 -15.36584 -14.88778 -14.69948 -14.57362 -14.36375 -14.30325 -14.05507 -13.84696 -13.31895 -13.18247 -12.97882 -12.89717 -12.81411 -12.57804 -12.29996 -12.24565 -12.16551 -11.92245 -11.70659 -11.55930 -11.22774 -11.04048 -10.98503 -10.88108 -10.77909 -10.68197 -10.47623 -10.34717 -10.29076 -10.09044 -10.01013 -9.91771 -9.52778 -8.92800 -8.60545 -7.30017 -5.76149 -3.13439 1.06186 1.59160 1.61183 3.08047 3.38347 3.39503 3.42202 3.48219 3.81461 4.07323 4.16681 4.23503 4.59852 4.62778 4.96159 4.97066 5.00780 5.04965 5.05124 5.10264 5.14333 5.19822 5.20517 5.34855 5.39065 5.49859 5.58036 5.59989 5.64883 5.70041 5.79907 5.87976 5.90464 6.06875 6.08017 6.13147 6.19987 6.29378 6.35417 6.47946 6.54028 6.68821 6.78199 6.81661 6.99828 7.76851 7.99601 8.23719 8.40971 8.43571 9.19916 9.92009 10.10444 11.41594 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012361 B = 0.003431 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.598354 B = 8158.514638 C = 9244.324784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.177 3.823 3 C -0.159 4.159 4 C -0.161 4.161 5 N -0.129 5.129 6 N -0.059 5.059 7 N -0.253 5.253 8 C 0.135 3.865 9 C 0.610 3.390 10 O -0.522 6.522 11 N -0.676 5.676 12 C 0.120 3.880 13 C 0.194 3.806 14 N -0.735 5.735 15 C -0.241 4.241 16 H 0.092 0.908 17 C 0.011 3.989 18 N -0.931 5.931 19 Si 0.878 3.122 20 H -0.283 1.283 21 H -0.293 1.293 22 H -0.277 1.277 23 C -0.128 4.128 24 C -0.114 4.114 25 C -0.119 4.119 26 C -0.128 4.128 27 N -0.249 5.249 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.411 0.589 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.363 0.637 41 H 0.259 0.741 42 H 0.081 0.919 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.068 0.932 46 H 0.056 0.944 47 H 0.056 0.944 48 H 0.066 0.934 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.819 19.377 -5.250 20.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.096 3.904 3 C -0.218 4.218 4 C -0.220 4.220 5 N -0.044 5.044 6 N -0.052 5.052 7 N -0.127 5.127 8 C -0.150 4.150 9 C 0.389 3.611 10 O -0.395 6.395 11 N -0.326 5.326 12 C -0.005 4.005 13 C 0.102 3.898 14 N -0.378 5.378 15 C -0.370 4.370 16 H 0.110 0.890 17 C -0.185 4.185 18 N -0.578 5.578 19 Si 0.708 3.292 20 H -0.209 1.209 21 H -0.220 1.220 22 H -0.203 1.203 23 C -0.168 4.168 24 C -0.152 4.152 25 C -0.157 4.157 26 C -0.166 4.166 27 N -0.102 5.102 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.247 0.753 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.197 0.803 41 H 0.069 0.931 42 H 0.099 0.901 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.087 0.913 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.085 0.915 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.514 19.455 -5.837 21.047 hybrid contribution -1.365 -0.437 0.568 1.542 sum -6.879 19.018 -5.270 20.899 Atomic orbital electron populations 1.22101 0.89910 1.04821 1.04280 1.21468 0.96549 0.92787 0.79550 1.22250 1.03548 0.91940 1.04030 1.22267 1.03606 1.01246 0.94843 1.50713 1.01074 1.34487 1.18123 1.78871 1.21736 1.09000 0.95555 1.76184 1.00263 1.16918 1.19356 1.25476 0.94705 1.01475 0.93314 1.16098 0.84410 0.79461 0.81102 1.90810 1.25212 1.56380 1.67142 1.45486 1.12027 1.54129 1.21004 1.21998 0.85689 0.98494 0.94301 1.20581 0.91369 0.87314 0.90534 1.42821 1.14718 1.18557 1.61691 1.18925 0.97862 0.96626 1.23604 0.89025 1.24634 0.97333 0.97063 0.99511 1.69698 1.35039 1.11066 1.41967 0.86661 0.86947 0.76810 0.78754 1.20904 1.21965 1.20311 1.22850 0.96977 1.02203 0.94813 1.22215 0.98032 0.98223 0.96734 1.22073 0.99010 0.98153 0.96470 1.22445 1.00430 0.98711 0.95051 1.74964 1.02518 1.17512 1.15210 0.90530 0.89190 0.90422 0.90198 0.89069 0.91352 0.91168 0.89057 0.90162 0.75311 0.91784 0.90435 0.80272 0.93131 0.90073 0.92433 0.92760 0.91283 0.92519 0.92495 0.91492 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 7.90 37.15 0.29 -0.68 16 2 C 0.18 1.50 1.30 -131.82 -0.17 1.33 16 3 C -0.16 -1.05 8.66 37.16 0.32 -0.73 16 4 C -0.16 -1.19 8.66 37.16 0.32 -0.87 16 5 N -0.13 -1.74 3.72 0.52 0.00 -1.74 16 6 N -0.06 -0.90 12.21 60.35 0.74 -0.17 16 7 N -0.25 -4.46 12.26 32.10 0.39 -4.07 16 8 C 0.13 2.43 8.14 -156.25 -1.27 1.16 16 9 C 0.61 11.80 7.84 -12.26 -0.10 11.70 16 10 O -0.52 -11.19 17.10 5.34 0.09 -11.10 16 11 N -0.68 -12.43 5.24 -61.20 -0.32 -12.75 16 12 C 0.12 2.18 4.30 -4.05 -0.02 2.16 16 13 C 0.19 3.41 0.52 -130.16 -0.07 3.34 16 14 N -0.73 -15.82 4.50 -45.70 -0.21 -16.02 16 15 C -0.24 -6.32 9.07 -15.06 -0.14 -6.46 16 16 H 0.09 2.62 7.35 -52.49 -0.39 2.23 16 17 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 18 N -0.93 -28.75 13.97 55.49 0.78 -27.97 16 19 Si 0.88 21.73 27.79 -169.99 -4.72 17.01 16 20 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 22 H -0.28 -6.37 6.45 56.52 0.36 -6.00 16 23 C -0.13 -2.13 5.89 -24.74 -0.15 -2.27 16 24 C -0.11 -1.71 6.79 -25.07 -0.17 -1.88 16 25 C -0.12 -1.61 6.80 -25.61 -0.17 -1.78 16 26 C -0.13 -1.88 5.70 -25.61 -0.15 -2.03 16 27 N -0.25 -4.06 11.85 32.11 0.38 -3.68 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.41 7.48 7.82 -40.82 -0.32 7.16 16 38 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 39 H 0.08 1.61 7.52 -51.93 -0.39 1.22 16 40 H 0.36 7.86 5.32 -40.82 -0.22 7.65 16 41 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 42 H 0.08 1.56 7.17 -51.93 -0.37 1.18 16 43 H 0.06 0.84 8.06 -51.93 -0.42 0.42 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.07 0.89 7.80 -51.93 -0.40 0.49 16 49 H 0.06 0.95 7.75 -51.92 -0.40 0.54 16 LS Contribution 397.40 15.07 5.99 5.99 Total: -1.00 -33.49 397.40 -6.44 -39.92 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -8.00 Total: 11.38 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -1.56 Total: 3.21 kcal Atomic # 7 Polarization: -68.17 SS G_CDS: 1.76 Total: -66.41 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.09 Total: -11.10 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.72 Total: 17.01 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.49 -6.44 -39.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482219302.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.189 kcal (2) G-P(sol) polarization free energy of solvation -33.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds