Wall clock time and date at job start Tue Mar 31 2020 20:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47271 * 2 1 4 4 C 1.53005 * 109.47121 * 240.00542 * 2 1 3 5 5 N 1.46499 * 109.47218 * 120.00288 * 2 1 3 6 6 N 1.28719 * 125.32017 * 359.97438 * 5 2 1 7 7 N 1.28984 * 108.98613 * 180.02562 * 6 5 2 8 8 C 1.34183 * 107.25556 * 0.02562 * 7 6 5 9 9 C 1.48006 * 126.70037 * 179.97438 * 8 7 6 10 10 O 1.21534 * 119.99701 * 180.02562 * 9 8 7 11 11 N 1.34775 * 119.99912 * 0.02562 * 9 8 7 12 12 C 1.46494 * 119.99984 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47157 * 175.61880 * 12 11 9 14 14 N 1.46498 * 110.54148 * 57.61957 * 13 12 11 15 15 C 1.36933 * 120.00105 * 59.23302 * 14 13 12 16 16 H 1.07999 * 120.00030 * 5.42936 * 15 14 13 17 17 C 1.38807 * 120.00236 * 185.43956 * 15 14 13 18 18 N 1.31617 * 120.00435 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99902 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47198 * 90.00269 * 19 17 15 21 21 H 1.48497 * 109.47332 * 210.00617 * 19 17 15 22 22 H 1.48501 * 109.47292 * 330.00763 * 19 17 15 23 23 C 1.54891 * 110.48661 * 180.23354 * 13 12 11 24 24 C 1.54891 * 102.75035 * 156.61710 * 23 13 12 25 25 C 1.54273 * 104.19570 * 322.06047 * 24 23 13 26 26 C 1.53872 * 106.59593 * 23.60465 * 25 24 23 27 27 N 1.28875 * 125.32083 * 180.28870 * 5 2 1 28 28 H 1.08994 * 109.47305 * 299.99558 * 1 2 3 29 29 H 1.08998 * 109.47250 * 59.99955 * 1 2 3 30 30 H 1.09005 * 109.47279 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47591 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47508 * 300.00777 * 3 2 1 33 33 H 1.09009 * 109.46910 * 60.00347 * 3 2 1 34 34 H 1.09004 * 109.46953 * 299.99615 * 4 2 1 35 35 H 1.08998 * 109.47464 * 59.99634 * 4 2 1 36 36 H 1.08997 * 109.47040 * 180.02562 * 4 2 1 37 37 H 0.96997 * 119.99888 * 0.02562 * 11 9 8 38 38 H 1.09001 * 109.47434 * 55.61418 * 12 11 9 39 39 H 1.09000 * 109.47261 * 295.61518 * 12 11 9 40 40 H 0.96997 * 119.99859 * 239.22503 * 14 13 12 41 41 H 0.97005 * 120.00055 * 179.97438 * 18 17 15 42 42 H 1.08993 * 110.75727 * 274.93225 * 23 13 12 43 43 H 1.09000 * 110.75921 * 38.30588 * 23 13 12 44 44 H 1.08998 * 110.48936 * 203.38272 * 24 23 13 45 45 H 1.08998 * 110.48872 * 80.73186 * 24 23 13 46 46 H 1.09003 * 110.02934 * 264.32397 * 25 24 23 47 47 H 1.08997 * 110.03462 * 142.89377 * 25 24 23 48 48 H 1.09002 * 110.03554 * 240.71641 * 26 25 24 49 49 H 1.09009 * 110.02819 * 119.29099 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6907 1.1961 6 7 1.2762 -1.2162 2.1071 7 7 2.0308 -1.7389 3.0132 8 6 3.3029 -1.5252 2.6437 9 6 4.5190 -1.9461 3.3748 10 8 5.6182 -1.6863 2.9261 11 7 4.4074 -2.6176 4.5380 12 6 5.6111 -3.0337 5.2619 13 6 5.2102 -3.6747 6.5921 14 7 4.3181 -4.8143 6.3653 15 6 4.7389 -5.8727 5.6052 16 1 5.7568 -5.9085 5.2459 17 6 3.8574 -6.8993 5.2961 18 7 4.2617 -7.9164 4.5650 19 14 2.0969 -6.8376 5.9179 20 1 1.2444 -6.1404 4.9218 21 1 1.5940 -8.2203 6.1185 22 1 2.0529 -6.1029 7.2076 23 6 6.4673 -4.1188 7.3805 24 6 5.9595 -4.1514 8.8434 25 6 5.0116 -2.9382 8.9420 26 6 4.5353 -2.6351 7.5106 27 7 3.2580 -0.8621 1.5036 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6766 -1.7489 -1.2494 35 1 1.6766 -0.2073 -2.1393 36 1 3.1299 -0.7215 -1.2491 37 1 3.5301 -2.8252 4.8959 38 1 6.2395 -2.1637 5.4526 39 1 6.1639 -3.7568 4.6623 40 1 3.4293 -4.8193 6.7538 41 1 3.6457 -8.6340 4.3494 42 1 6.7928 -5.1091 7.0625 43 1 7.2714 -3.3917 7.2669 44 1 6.7918 -4.0426 9.5387 45 1 5.4166 -5.0762 9.0383 46 1 5.5459 -2.0789 9.3475 47 1 4.1588 -3.1811 9.5758 48 1 4.8384 -1.6288 7.2214 49 1 3.4512 -2.7310 7.4497 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482219302.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:49 Heat of formation + Delta-G solvation = 72.835220 kcal Electronic energy + Delta-G solvation = -30137.453477 eV Core-core repulsion = 26136.858050 eV Total energy + Delta-G solvation = -4000.595427 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.62035 -41.01152 -39.66556 -38.62954 -35.76719 -35.23936 -34.66228 -33.64086 -32.77445 -30.15057 -29.54975 -28.63188 -28.55374 -27.03565 -25.65576 -25.41694 -24.54482 -22.26965 -21.72194 -21.14010 -20.37947 -19.49399 -19.08821 -18.58012 -17.78929 -17.30275 -16.84309 -16.32157 -16.10719 -15.93568 -15.48706 -15.28737 -15.20680 -15.14148 -14.78601 -14.64135 -14.15150 -14.06475 -13.77243 -13.50144 -13.37297 -13.29975 -13.24533 -13.01164 -12.87035 -12.66328 -12.46581 -12.37222 -12.32923 -12.14227 -12.12442 -11.99252 -11.91737 -11.85883 -11.63413 -11.59040 -11.49216 -11.44623 -11.16274 -10.92577 -10.15843 -9.28068 -7.96077 -5.29243 -0.18525 0.23672 0.64119 1.38552 1.43122 1.48036 1.70700 1.91670 2.52032 2.80788 2.95628 3.34354 3.46633 3.52518 3.56086 3.62464 3.75447 3.88476 3.98575 4.05417 4.27644 4.39335 4.42569 4.50767 4.56643 4.57082 4.58864 4.68071 4.70402 4.70959 4.71974 4.84857 4.93809 4.99998 5.04305 5.09223 5.10805 5.16342 5.19833 5.21308 5.22049 5.31183 5.40967 5.50959 5.68245 5.87557 6.26303 6.27878 6.84776 7.02357 7.14683 7.89296 8.07711 9.25479 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012361 B = 0.003431 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.598354 B = 8158.514638 C = 9244.324784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.157 3.843 3 C -0.155 4.155 4 C -0.159 4.159 5 N -0.109 5.109 6 N -0.059 5.059 7 N -0.272 5.272 8 C 0.115 3.885 9 C 0.610 3.390 10 O -0.550 6.550 11 N -0.672 5.672 12 C 0.125 3.875 13 C 0.186 3.814 14 N -0.733 5.733 15 C -0.204 4.204 16 H 0.057 0.943 17 C -0.061 4.061 18 N -0.986 5.986 19 Si 0.942 3.058 20 H -0.287 1.287 21 H -0.304 1.304 22 H -0.245 1.245 23 C -0.128 4.128 24 C -0.112 4.112 25 C -0.112 4.112 26 C -0.123 4.123 27 N -0.255 5.255 28 H 0.072 0.928 29 H 0.130 0.870 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.131 0.869 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.133 0.867 36 H 0.062 0.938 37 H 0.413 0.587 38 H 0.088 0.912 39 H 0.040 0.960 40 H 0.367 0.633 41 H 0.253 0.747 42 H 0.044 0.956 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.045 0.955 46 H 0.084 0.916 47 H 0.064 0.936 48 H 0.087 0.913 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.548 22.724 -4.630 24.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.079 3.921 3 C -0.213 4.213 4 C -0.217 4.217 5 N -0.026 5.026 6 N -0.051 5.051 7 N -0.146 5.146 8 C -0.169 4.169 9 C 0.391 3.609 10 O -0.426 6.426 11 N -0.321 5.321 12 C 0.000 4.000 13 C 0.096 3.904 14 N -0.377 5.377 15 C -0.335 4.335 16 H 0.075 0.925 17 C -0.252 4.252 18 N -0.637 5.637 19 Si 0.771 3.229 20 H -0.214 1.214 21 H -0.232 1.232 22 H -0.169 1.169 23 C -0.168 4.168 24 C -0.149 4.149 25 C -0.150 4.150 26 C -0.161 4.161 27 N -0.110 5.110 28 H 0.091 0.909 29 H 0.148 0.852 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.150 0.850 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.151 0.849 36 H 0.081 0.919 37 H 0.249 0.751 38 H 0.106 0.894 39 H 0.059 0.941 40 H 0.201 0.799 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.100 0.900 44 H 0.096 0.904 45 H 0.064 0.936 46 H 0.102 0.898 47 H 0.083 0.917 48 H 0.105 0.895 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.254 22.862 -5.164 24.535 hybrid contribution -0.750 -1.356 0.229 1.567 sum -8.005 21.506 -4.934 23.472 Atomic orbital electron populations 1.22181 0.87901 1.04591 1.06084 1.22274 0.98160 0.93629 0.78063 1.22300 1.02552 0.90588 1.05858 1.22328 1.02537 1.00997 0.95874 1.51376 1.00053 1.32762 1.18415 1.78785 1.21525 1.09104 0.95724 1.76133 1.00103 1.17871 1.20505 1.25204 0.94500 1.03010 0.94198 1.16260 0.84573 0.79031 0.81082 1.90781 1.26363 1.57597 1.67825 1.45481 1.12102 1.53674 1.20881 1.21963 0.85730 0.98525 0.93774 1.20885 0.91720 0.86870 0.90957 1.42784 1.15457 1.18514 1.60927 1.18796 0.96030 0.97105 1.21600 0.92463 1.25352 1.01679 0.97214 1.00988 1.69883 1.36430 1.12402 1.45015 0.85594 0.81585 0.76313 0.79405 1.21371 1.23167 1.16898 1.22818 0.97162 1.00778 0.96000 1.22191 0.99013 0.98133 0.95603 1.22063 0.99114 0.98197 0.95619 1.22431 1.00305 0.98323 0.94995 1.74924 1.04005 1.17371 1.14657 0.90927 0.85158 0.91653 0.91778 0.85024 0.91707 0.92520 0.84862 0.91866 0.75078 0.89428 0.94109 0.79893 0.93859 0.93749 0.89962 0.90427 0.93611 0.89767 0.91675 0.89468 0.91544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 7.90 71.98 0.57 -0.93 16 2 C 0.16 2.34 1.30 3.60 0.00 2.35 16 3 C -0.15 -1.64 8.66 71.98 0.62 -1.01 16 4 C -0.16 -2.03 8.66 71.98 0.62 -1.41 16 5 N -0.11 -2.86 3.72 -152.26 -0.57 -3.43 16 6 N -0.06 -1.79 12.21 37.02 0.45 -1.33 16 7 N -0.27 -9.61 12.26 -52.37 -0.64 -10.25 16 8 C 0.11 4.19 8.14 137.15 1.12 5.31 16 9 C 0.61 24.02 7.84 86.83 0.68 24.70 16 10 O -0.55 -24.12 17.10 -3.82 -0.07 -24.19 16 11 N -0.67 -24.82 5.24 -465.83 -2.44 -27.26 16 12 C 0.13 4.54 4.30 86.38 0.37 4.91 16 13 C 0.19 6.37 0.52 4.68 0.00 6.37 16 14 N -0.73 -31.46 4.50 -298.51 -1.34 -32.80 16 15 C -0.20 -11.09 9.07 84.03 0.76 -10.32 16 16 H 0.06 3.48 7.35 -2.91 -0.02 3.46 16 17 C -0.06 -3.58 5.50 84.86 0.47 -3.12 16 18 N -0.99 -63.75 13.97 21.65 0.30 -63.44 16 19 Si 0.94 45.64 27.79 68.60 1.91 47.55 16 20 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 21 H -0.30 -15.24 7.11 99.48 0.71 -14.54 16 22 H -0.24 -10.40 6.45 99.48 0.64 -9.75 16 23 C -0.13 -4.13 5.89 31.89 0.19 -3.94 16 24 C -0.11 -3.08 6.79 31.67 0.22 -2.86 16 25 C -0.11 -2.58 6.80 31.32 0.21 -2.37 16 26 C -0.12 -3.22 5.70 31.32 0.18 -3.04 16 27 N -0.26 -8.35 11.85 -52.32 -0.62 -8.97 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.13 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 37 H 0.41 14.93 7.82 -92.71 -0.72 14.20 16 38 H 0.09 2.77 8.08 -2.39 -0.02 2.75 16 39 H 0.04 1.78 7.52 -2.39 -0.02 1.76 16 40 H 0.37 15.32 5.32 -92.71 -0.49 14.83 16 41 H 0.25 15.79 8.31 -92.70 -0.77 15.02 16 42 H 0.04 1.75 7.17 -2.39 -0.02 1.74 16 43 H 0.08 2.25 8.06 -2.39 -0.02 2.23 16 44 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.09 1.98 7.80 -2.39 -0.02 1.97 16 49 H 0.07 1.75 7.75 -2.38 -0.02 1.73 16 Total: -1.00 -77.70 397.40 2.68 -75.03 By element: Atomic # 1 Polarization: 34.79 SS G_CDS: -0.32 Total: 34.47 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: 6.01 Total: 14.63 kcal Atomic # 7 Polarization: -142.63 SS G_CDS: -4.86 Total: -147.49 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.07 Total: -24.19 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.91 Total: 47.55 kcal Total: -77.70 2.68 -75.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482219302.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.861 kcal (2) G-P(sol) polarization free energy of solvation -77.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds