Wall clock time and date at job start Tue Mar 31 2020 19:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42908 * 113.99828 * 2 1 4 4 C 1.52998 * 109.46916 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46980 * 179.97438 * 4 3 2 6 6 C 1.35032 * 124.88225 * 125.00336 * 5 4 3 7 7 C 1.35362 * 107.22963 * 180.02562 * 6 5 4 8 8 C 1.41509 * 105.50284 * 359.97438 * 7 6 5 9 9 C 1.47708 * 126.51953 * 179.97438 * 8 7 6 10 10 O 1.21567 * 119.99791 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99924 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00044 * 179.97438 * 11 9 8 13 13 H 1.08998 * 110.43554 * 32.45262 * 12 11 9 14 14 C 1.54890 * 110.59848 * 269.83809 * 12 11 9 15 15 C 1.54888 * 102.74845 * 203.32368 * 14 12 11 16 16 C 1.54263 * 104.19606 * 37.93987 * 15 14 12 17 17 H 1.09003 * 110.07272 * 95.69767 * 16 15 14 18 18 C 1.53001 * 110.03243 * 217.10385 * 16 15 14 19 19 N 1.46490 * 109.47264 * 292.16632 * 18 16 15 20 20 C 1.36935 * 120.00121 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00139 * 0.02562 * 20 19 18 22 22 C 1.38816 * 120.00401 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99569 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00172 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47055 * 180.02562 * 24 22 20 26 26 H 1.48505 * 109.46653 * 299.99639 * 24 22 20 27 27 H 1.48495 * 109.47483 * 60.00002 * 24 22 20 28 28 C 1.53877 * 106.59888 * 336.39198 * 16 15 14 29 29 N 1.28464 * 124.88339 * 305.33165 * 5 4 3 30 30 H 1.08998 * 109.47249 * 299.99825 * 1 2 3 31 31 H 1.09005 * 109.46801 * 60.00601 * 1 2 3 32 32 H 1.09003 * 109.46907 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46867 * 60.00456 * 3 2 1 34 34 H 1.09001 * 109.46954 * 299.99803 * 3 2 1 35 35 H 1.09000 * 109.47456 * 60.00647 * 4 3 2 36 36 H 1.09001 * 109.47409 * 299.99843 * 4 3 2 37 37 H 1.08001 * 126.38980 * 0.02562 * 6 5 4 38 38 H 1.08001 * 127.25164 * 180.02562 * 7 6 5 39 39 H 0.96997 * 119.99648 * 359.97438 * 11 9 8 40 40 H 1.09003 * 110.75396 * 321.63851 * 14 12 11 41 41 H 1.08997 * 110.75901 * 84.82130 * 14 12 11 42 42 H 1.09000 * 110.48442 * 279.26009 * 15 14 12 43 43 H 1.09000 * 110.48713 * 156.61850 * 15 14 12 44 44 H 1.09003 * 109.46836 * 172.16340 * 18 16 15 45 45 H 1.08999 * 109.47071 * 52.17379 * 18 16 15 46 46 H 0.97000 * 120.00577 * 0.02562 * 19 18 16 47 47 H 0.97001 * 119.99885 * 359.97438 * 23 22 20 48 48 H 1.08996 * 110.03408 * 119.28815 * 28 16 15 49 49 H 1.09004 * 110.02872 * 240.66372 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1312 2.5232 0.0000 6 6 5.0255 2.9708 0.9074 7 6 5.3347 4.2449 0.5708 8 6 4.5727 4.5255 -0.5881 9 6 4.5576 5.7942 -1.3443 10 8 5.2486 6.7263 -0.9815 11 7 3.7771 5.9188 -2.4360 12 6 3.7618 7.1773 -3.1857 13 1 4.7393 7.6575 -3.1433 14 6 2.6676 8.1258 -2.6359 15 6 2.3839 9.0556 -3.8418 16 6 2.4696 8.1226 -5.0673 17 1 1.4738 7.7764 -5.3443 18 6 3.1137 8.8597 -6.2432 19 7 2.2146 9.9192 -6.7069 20 6 2.5814 10.7174 -7.7573 21 1 3.5334 10.5657 -8.2441 22 6 1.7296 11.7217 -8.1965 23 7 0.5695 11.9070 -7.6029 24 14 2.2298 12.8102 -9.6299 25 1 1.1542 13.7976 -9.9005 26 1 3.4857 13.5272 -9.2921 27 1 2.4475 11.9716 -10.8359 28 6 3.3457 6.9283 -4.6501 29 7 3.8736 3.4417 -0.8604 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8574 0.6438 -0.8891 36 1 3.8567 0.6440 0.8909 37 1 5.4204 2.4157 1.7455 38 1 6.0194 4.9075 1.0792 39 1 3.2256 5.1752 -2.7252 40 1 1.7737 7.5660 -2.3610 41 1 3.0418 8.6952 -1.7852 42 1 3.1390 9.8391 -3.9053 43 1 1.3875 9.4903 -3.7622 44 1 3.2970 8.1570 -7.0560 45 1 4.0584 9.2991 -5.9230 46 1 1.3596 10.0558 -6.2696 47 1 0.3097 11.3415 -6.8588 48 1 2.7749 6.0027 -4.7239 49 1 4.2293 6.8734 -5.2860 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486206872.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:43 Heat of formation + Delta-G solvation = 2.082646 kcal Electronic energy + Delta-G solvation = -28099.262234 eV Core-core repulsion = 24063.305994 eV Total energy + Delta-G solvation = -4035.956240 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.07171 -39.81739 -38.62400 -37.98309 -34.97485 -34.47497 -33.53045 -31.28805 -30.88870 -30.00845 -28.70258 -27.72453 -26.86135 -24.83509 -23.95580 -22.68860 -22.35063 -21.83121 -20.57132 -20.22083 -19.47804 -18.30479 -17.43176 -17.14851 -16.91199 -16.61681 -16.37602 -16.10006 -15.41211 -15.19313 -14.74669 -14.63494 -14.21064 -13.94740 -13.89755 -13.70345 -13.59671 -13.32194 -13.20828 -13.08975 -12.65902 -12.29634 -12.18772 -11.99515 -11.76489 -11.38928 -11.26191 -10.94750 -10.71609 -10.66306 -10.47202 -10.40178 -10.32977 -10.21159 -10.09369 -9.92725 -9.68414 -9.47703 -9.11310 -9.02271 -8.81291 -6.93083 -6.04871 -3.03403 1.24082 1.74456 1.82074 3.00535 3.19149 3.26786 3.55313 3.59314 3.76547 3.86428 4.16696 4.30360 4.37968 4.50312 4.66172 4.69008 4.72323 4.75338 4.81576 4.87204 4.94836 5.05162 5.07474 5.10136 5.28703 5.40377 5.50740 5.58087 5.59657 5.63172 5.69644 5.85622 5.92582 6.00359 6.10394 6.11898 6.20745 6.25653 6.28119 6.37907 6.46697 6.54837 6.62608 6.79023 6.91990 7.29999 7.58227 7.86856 8.11076 8.81957 9.30315 10.16683 10.32312 11.44003 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017174 B = 0.001819 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.933585 B =15392.433478 C =16498.169839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.049 3.951 4 C 0.125 3.875 5 N -0.282 5.282 6 C -0.015 4.015 7 C -0.177 4.177 8 C -0.011 4.011 9 C 0.603 3.397 10 O -0.531 6.531 11 N -0.708 5.708 12 C 0.139 3.861 13 H 0.098 0.902 14 C -0.133 4.133 15 C -0.111 4.111 16 C -0.097 4.097 17 H 0.072 0.928 18 C 0.164 3.836 19 N -0.743 5.743 20 C -0.329 4.329 21 H 0.063 0.937 22 C -0.048 4.048 23 N -0.946 5.946 24 Si 1.080 2.920 25 H -0.285 1.285 26 H -0.295 1.295 27 H -0.296 1.296 28 C -0.120 4.120 29 N -0.262 5.262 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.184 0.816 38 H 0.165 0.835 39 H 0.404 0.596 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.017 0.983 45 H 0.021 0.979 46 H 0.367 0.633 47 H 0.254 0.746 48 H 0.067 0.933 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.438 -27.246 21.144 34.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.028 4.028 4 C 0.004 3.996 5 N -0.072 5.072 6 C -0.157 4.157 7 C -0.205 4.205 8 C -0.172 4.172 9 C 0.387 3.613 10 O -0.406 6.406 11 N -0.359 5.359 12 C 0.035 3.965 13 H 0.116 0.884 14 C -0.171 4.171 15 C -0.149 4.149 16 C -0.116 4.116 17 H 0.091 0.909 18 C 0.037 3.963 19 N -0.389 5.389 20 C -0.460 4.460 21 H 0.081 0.919 22 C -0.245 4.245 23 N -0.592 5.592 24 Si 0.911 3.089 25 H -0.211 1.211 26 H -0.223 1.223 27 H -0.223 1.223 28 C -0.159 4.159 29 N -0.098 5.098 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.122 0.878 36 H 0.131 0.869 37 H 0.201 0.799 38 H 0.182 0.818 39 H 0.239 0.761 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.035 0.965 45 H 0.039 0.961 46 H 0.200 0.800 47 H 0.065 0.935 48 H 0.085 0.915 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.961 -26.053 19.553 32.814 hybrid contribution 0.347 -1.256 1.578 2.047 sum 4.308 -27.309 21.131 34.797 Atomic orbital electron populations 1.22813 0.79582 1.03310 1.00607 1.87772 1.20866 1.26564 1.95644 1.22645 0.92055 0.85730 1.02414 1.21698 0.93153 0.78446 1.06312 1.45310 1.31205 1.11419 1.19264 1.22904 0.97924 0.96602 0.98280 1.21825 1.04502 0.95974 0.98170 1.22048 1.01463 0.94065 0.99576 1.16894 0.79662 0.84791 0.79986 1.90810 1.42528 1.39232 1.67981 1.45976 1.45148 1.16802 1.27973 1.21988 1.00576 0.83446 0.90486 0.88436 1.22887 0.98084 0.97598 0.98573 1.22319 1.02450 0.97481 0.92644 1.21902 0.99169 0.94441 0.96111 0.90928 1.20733 0.93103 0.90003 0.92458 1.42358 1.19692 1.37606 1.39216 1.20048 1.03830 1.12709 1.09440 0.91853 1.25772 0.95216 0.99124 1.04395 1.70881 1.21562 1.41958 1.24750 0.83236 0.74956 0.75912 0.74766 1.21068 1.22295 1.22340 1.22391 1.00436 0.98708 0.94363 1.73471 1.22676 0.97758 1.15933 0.93702 0.93449 0.89004 0.92432 0.91182 0.87790 0.86855 0.79882 0.81793 0.76071 0.91565 0.91299 0.90808 0.91451 0.96479 0.96100 0.80019 0.93467 0.91482 0.90711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.39 -2.41 10.70 -35.23 -0.38 -2.79 16 3 C 0.05 0.27 6.04 37.16 0.22 0.49 16 4 C 0.12 0.56 6.77 -4.04 -0.03 0.53 16 5 N -0.28 -2.06 3.41 -61.33 -0.21 -2.27 16 6 C -0.02 -0.10 11.40 -17.17 -0.20 -0.29 16 7 C -0.18 -1.66 10.81 -39.36 -0.43 -2.08 16 8 C -0.01 -0.12 7.13 -82.76 -0.59 -0.71 16 9 C 0.60 8.18 7.82 -12.39 -0.10 8.08 16 10 O -0.53 -8.88 16.57 5.31 0.09 -8.79 16 11 N -0.71 -8.50 5.16 -53.19 -0.27 -8.77 16 12 C 0.14 1.84 3.21 -66.28 -0.21 1.63 16 13 H 0.10 1.45 7.55 -51.93 -0.39 1.06 16 14 C -0.13 -1.81 6.58 -24.74 -0.16 -1.98 16 15 C -0.11 -1.76 6.08 -25.07 -0.15 -1.92 16 16 C -0.10 -1.58 2.96 -89.50 -0.26 -1.84 16 17 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 18 C 0.16 3.42 5.31 -4.05 -0.02 3.40 16 19 N -0.74 -19.25 5.45 -59.91 -0.33 -19.58 16 20 C -0.33 -9.59 9.99 -15.06 -0.15 -9.74 16 21 H 0.06 1.82 7.83 -52.49 -0.41 1.41 16 22 C -0.05 -1.43 5.50 -17.43 -0.10 -1.52 16 23 N -0.95 -29.85 13.70 55.49 0.76 -29.09 16 24 Si 1.08 26.55 29.92 -169.99 -5.09 21.47 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.30 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.30 -6.94 7.11 56.52 0.40 -6.54 16 28 C -0.12 -1.58 6.19 -25.62 -0.16 -1.74 16 29 N -0.26 -2.61 11.35 33.42 0.38 -2.23 16 30 H 0.04 0.16 8.14 -51.93 -0.42 -0.27 16 31 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 35 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.11 0.22 8.04 -51.93 -0.42 -0.19 16 37 H 0.18 0.45 8.06 -52.49 -0.42 0.03 16 38 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.40 4.14 8.09 -40.82 -0.33 3.81 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.07 1.30 7.76 -51.93 -0.40 0.89 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.02 0.45 8.00 -51.93 -0.42 0.03 16 46 H 0.37 9.64 6.38 -40.82 -0.26 9.38 16 47 H 0.25 7.89 6.77 -40.82 -0.28 7.61 16 48 H 0.07 0.76 7.73 -51.93 -0.40 0.36 16 49 H 0.07 0.99 7.67 -51.93 -0.40 0.59 16 LS Contribution 405.85 15.07 6.12 6.12 Total: -1.00 -36.41 405.85 -8.14 -44.55 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -8.00 Total: 7.84 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -1.22 Total: -6.45 kcal Atomic # 7 Polarization: -62.27 SS G_CDS: 0.33 Total: -61.94 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -0.29 Total: -11.58 kcal Atomic # 14 Polarization: 26.55 SS G_CDS: -5.09 Total: 21.47 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.41 -8.14 -44.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486206872.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.636 kcal (2) G-P(sol) polarization free energy of solvation -36.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds