Wall clock time and date at job start Tue Mar 31 2020 19:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42908 * 113.99828 * 2 1 4 4 C 1.52998 * 109.46916 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46980 * 179.97438 * 4 3 2 6 6 C 1.35032 * 124.88225 * 125.00336 * 5 4 3 7 7 C 1.35362 * 107.22963 * 180.02562 * 6 5 4 8 8 C 1.41509 * 105.50284 * 359.97438 * 7 6 5 9 9 C 1.47708 * 126.51953 * 179.97438 * 8 7 6 10 10 O 1.21567 * 119.99791 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99924 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00044 * 179.97438 * 11 9 8 13 13 H 1.08998 * 110.43554 * 32.45262 * 12 11 9 14 14 C 1.54890 * 110.59848 * 269.83809 * 12 11 9 15 15 C 1.54888 * 102.74845 * 203.32368 * 14 12 11 16 16 C 1.54263 * 104.19606 * 37.93987 * 15 14 12 17 17 H 1.09003 * 110.07272 * 95.69767 * 16 15 14 18 18 C 1.53001 * 110.03243 * 217.10385 * 16 15 14 19 19 N 1.46490 * 109.47264 * 292.16632 * 18 16 15 20 20 C 1.36935 * 120.00121 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00139 * 0.02562 * 20 19 18 22 22 C 1.38816 * 120.00401 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99569 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00172 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47055 * 180.02562 * 24 22 20 26 26 H 1.48505 * 109.46653 * 299.99639 * 24 22 20 27 27 H 1.48495 * 109.47483 * 60.00002 * 24 22 20 28 28 C 1.53877 * 106.59888 * 336.39198 * 16 15 14 29 29 N 1.28464 * 124.88339 * 305.33165 * 5 4 3 30 30 H 1.08998 * 109.47249 * 299.99825 * 1 2 3 31 31 H 1.09005 * 109.46801 * 60.00601 * 1 2 3 32 32 H 1.09003 * 109.46907 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46867 * 60.00456 * 3 2 1 34 34 H 1.09001 * 109.46954 * 299.99803 * 3 2 1 35 35 H 1.09000 * 109.47456 * 60.00647 * 4 3 2 36 36 H 1.09001 * 109.47409 * 299.99843 * 4 3 2 37 37 H 1.08001 * 126.38980 * 0.02562 * 6 5 4 38 38 H 1.08001 * 127.25164 * 180.02562 * 7 6 5 39 39 H 0.96997 * 119.99648 * 359.97438 * 11 9 8 40 40 H 1.09003 * 110.75396 * 321.63851 * 14 12 11 41 41 H 1.08997 * 110.75901 * 84.82130 * 14 12 11 42 42 H 1.09000 * 110.48442 * 279.26009 * 15 14 12 43 43 H 1.09000 * 110.48713 * 156.61850 * 15 14 12 44 44 H 1.09003 * 109.46836 * 172.16340 * 18 16 15 45 45 H 1.08999 * 109.47071 * 52.17379 * 18 16 15 46 46 H 0.97000 * 120.00577 * 0.02562 * 19 18 16 47 47 H 0.97001 * 119.99885 * 359.97438 * 23 22 20 48 48 H 1.08996 * 110.03408 * 119.28815 * 28 16 15 49 49 H 1.09004 * 110.02872 * 240.66372 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1312 2.5232 0.0000 6 6 5.0255 2.9708 0.9074 7 6 5.3347 4.2449 0.5708 8 6 4.5727 4.5255 -0.5881 9 6 4.5576 5.7942 -1.3443 10 8 5.2486 6.7263 -0.9815 11 7 3.7771 5.9188 -2.4360 12 6 3.7618 7.1773 -3.1857 13 1 4.7393 7.6575 -3.1433 14 6 2.6676 8.1258 -2.6359 15 6 2.3839 9.0556 -3.8418 16 6 2.4696 8.1226 -5.0673 17 1 1.4738 7.7764 -5.3443 18 6 3.1137 8.8597 -6.2432 19 7 2.2146 9.9192 -6.7069 20 6 2.5814 10.7174 -7.7573 21 1 3.5334 10.5657 -8.2441 22 6 1.7296 11.7217 -8.1965 23 7 0.5695 11.9070 -7.6029 24 14 2.2298 12.8102 -9.6299 25 1 1.1542 13.7976 -9.9005 26 1 3.4857 13.5272 -9.2921 27 1 2.4475 11.9716 -10.8359 28 6 3.3457 6.9283 -4.6501 29 7 3.8736 3.4417 -0.8604 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8574 0.6438 -0.8891 36 1 3.8567 0.6440 0.8909 37 1 5.4204 2.4157 1.7455 38 1 6.0194 4.9075 1.0792 39 1 3.2256 5.1752 -2.7252 40 1 1.7737 7.5660 -2.3610 41 1 3.0418 8.6952 -1.7852 42 1 3.1390 9.8391 -3.9053 43 1 1.3875 9.4903 -3.7622 44 1 3.2970 8.1570 -7.0560 45 1 4.0584 9.2991 -5.9230 46 1 1.3596 10.0558 -6.2696 47 1 0.3097 11.3415 -6.8588 48 1 2.7749 6.0027 -4.7239 49 1 4.2293 6.8734 -5.2860 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486206872.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:42 Heat of formation + Delta-G solvation = -23.973946 kcal Electronic energy + Delta-G solvation = -28100.392133 eV Core-core repulsion = 24063.305994 eV Total energy + Delta-G solvation = -4037.086139 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.70347 -40.91635 -39.29646 -38.98532 -36.75467 -35.13751 -34.83464 -32.90784 -31.74563 -30.63562 -30.11202 -28.95551 -27.33883 -26.13330 -25.21259 -24.21437 -23.35992 -22.44891 -21.68896 -21.14922 -20.79394 -19.33783 -18.92701 -18.03988 -17.61629 -17.36401 -17.04552 -16.95026 -16.66932 -16.19256 -15.82433 -15.61275 -15.50112 -15.35034 -15.05677 -14.91046 -14.75967 -14.40192 -14.22596 -14.06717 -13.66632 -13.11598 -13.01635 -12.82853 -12.65581 -12.61002 -12.52060 -12.35160 -12.12778 -11.96129 -11.87249 -11.84500 -11.78948 -11.52290 -11.33126 -11.16855 -10.91434 -10.79503 -10.38618 -10.16485 -10.00736 -9.10553 -8.40870 -5.33784 0.45575 1.14337 1.30255 1.57781 1.68220 1.84736 2.08238 2.31866 2.71230 2.76492 3.33909 3.38572 3.49827 3.52317 3.74363 3.79166 3.81395 3.96181 3.97249 4.11440 4.20318 4.32201 4.39210 4.42006 4.43556 4.46755 4.52639 4.56054 4.60864 4.64813 4.65359 4.72537 4.75486 4.82648 4.83348 4.95203 4.99485 5.04620 5.15814 5.28626 5.29995 5.42817 5.48426 5.58098 5.78359 5.99561 6.39649 6.49406 6.84417 7.09924 7.12625 8.00906 8.11824 9.11408 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017174 B = 0.001819 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.933585 B =15392.433478 C =16498.169839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.052 3.948 4 C 0.122 3.878 5 N -0.276 5.276 6 C 0.009 3.991 7 C -0.202 4.202 8 C -0.040 4.040 9 C 0.600 3.400 10 O -0.572 6.572 11 N -0.697 5.697 12 C 0.145 3.855 13 H 0.080 0.920 14 C -0.121 4.121 15 C -0.109 4.109 16 C -0.087 4.087 17 H 0.074 0.926 18 C 0.162 3.838 19 N -0.755 5.755 20 C -0.337 4.337 21 H 0.064 0.936 22 C -0.106 4.106 23 N -0.974 5.974 24 Si 1.129 2.871 25 H -0.291 1.291 26 H -0.279 1.279 27 H -0.277 1.277 28 C -0.108 4.108 29 N -0.273 5.273 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.104 0.896 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.109 0.891 36 H 0.147 0.853 37 H 0.230 0.770 38 H 0.164 0.836 39 H 0.415 0.585 40 H 0.081 0.919 41 H 0.061 0.939 42 H 0.051 0.949 43 H 0.060 0.940 44 H 0.019 0.981 45 H 0.015 0.985 46 H 0.362 0.638 47 H 0.244 0.756 48 H 0.094 0.906 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.920 -29.901 21.967 37.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.026 4.026 4 C 0.002 3.998 5 N -0.066 5.066 6 C -0.133 4.133 7 C -0.230 4.230 8 C -0.199 4.199 9 C 0.386 3.614 10 O -0.450 6.450 11 N -0.348 5.348 12 C 0.041 3.959 13 H 0.098 0.902 14 C -0.160 4.160 15 C -0.147 4.147 16 C -0.106 4.106 17 H 0.092 0.908 18 C 0.036 3.964 19 N -0.400 5.400 20 C -0.468 4.468 21 H 0.082 0.918 22 C -0.297 4.297 23 N -0.622 5.622 24 Si 0.954 3.046 25 H -0.217 1.217 26 H -0.205 1.205 27 H -0.203 1.203 28 C -0.147 4.147 29 N -0.110 5.110 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.122 0.878 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.128 0.872 36 H 0.165 0.835 37 H 0.246 0.754 38 H 0.182 0.818 39 H 0.252 0.748 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.037 0.963 45 H 0.033 0.967 46 H 0.194 0.806 47 H 0.054 0.946 48 H 0.112 0.888 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.450 -28.774 20.378 35.539 hybrid contribution 0.196 -0.559 1.387 1.508 sum 4.646 -29.332 21.765 36.819 Atomic orbital electron populations 1.22961 0.78789 1.04276 1.00878 1.87747 1.21828 1.26831 1.95677 1.22593 0.92771 0.85462 1.01773 1.21982 0.92371 0.77102 1.08306 1.45639 1.30728 1.11690 1.18526 1.23510 0.96050 0.95536 0.98203 1.22029 1.05225 0.97606 0.98156 1.21842 1.03497 0.93847 1.00760 1.17238 0.78933 0.85240 0.79958 1.90778 1.44215 1.40856 1.69115 1.45829 1.44964 1.16532 1.27480 1.21766 0.99471 0.83919 0.90769 0.90233 1.22778 0.98794 0.97170 0.97217 1.22228 1.01297 0.97355 0.93798 1.21784 0.99432 0.95116 0.94303 0.90757 1.20901 0.92383 0.89033 0.94061 1.42561 1.20224 1.38476 1.38726 1.20416 1.03695 1.12863 1.09864 0.91771 1.27263 0.94883 1.00856 1.06700 1.70992 1.22961 1.42764 1.25491 0.82615 0.74985 0.74499 0.72544 1.21719 1.20511 1.20266 1.22284 1.00224 0.98255 0.93916 1.73413 1.22757 0.97875 1.16926 0.93073 0.93566 0.87775 0.92362 0.92614 0.87243 0.83491 0.75372 0.81842 0.74807 0.90018 0.91975 0.93002 0.92146 0.96305 0.96722 0.80617 0.94592 0.88799 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.43 16 2 O -0.40 -4.18 10.70 -148.98 -1.59 -5.78 16 3 C 0.05 0.46 6.04 71.98 0.43 0.89 16 4 C 0.12 0.71 6.77 86.38 0.58 1.29 16 5 N -0.28 -3.30 3.41 -347.94 -1.19 -4.48 16 6 C 0.01 0.09 11.40 83.54 0.95 1.04 16 7 C -0.20 -3.56 10.81 22.41 0.24 -3.32 16 8 C -0.04 -0.91 7.13 42.46 0.30 -0.60 16 9 C 0.60 16.41 7.82 86.75 0.68 17.09 16 10 O -0.57 -19.74 16.57 -3.93 -0.07 -19.81 16 11 N -0.70 -16.31 5.16 -440.46 -2.27 -18.59 16 12 C 0.15 3.81 3.21 46.06 0.15 3.96 16 13 H 0.08 2.42 7.55 -2.39 -0.02 2.40 16 14 C -0.12 -3.29 6.58 31.89 0.21 -3.08 16 15 C -0.11 -3.52 6.08 31.67 0.19 -3.32 16 16 C -0.09 -2.80 2.96 -10.07 -0.03 -2.83 16 17 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 18 C 0.16 6.79 5.31 86.38 0.46 7.25 16 19 N -0.76 -39.74 5.45 -343.47 -1.87 -41.62 16 20 C -0.34 -19.77 9.99 84.03 0.84 -18.93 16 21 H 0.06 3.68 7.83 -2.91 -0.02 3.66 16 22 C -0.11 -6.35 5.50 84.86 0.47 -5.88 16 23 N -0.97 -62.42 13.70 21.65 0.30 -62.13 16 24 Si 1.13 53.34 29.92 68.60 2.05 55.39 16 25 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 26 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 27 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 28 C -0.11 -2.71 6.19 31.32 0.19 -2.51 16 29 N -0.27 -5.03 11.35 -48.17 -0.55 -5.58 16 30 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.05 0.32 8.14 -2.38 -0.02 0.30 16 32 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.06 0.65 8.08 -2.39 -0.02 0.63 16 35 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.15 -0.09 8.04 -2.39 -0.02 -0.11 16 37 H 0.23 -0.02 8.06 -2.91 -0.02 -0.05 16 38 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 39 H 0.41 7.94 8.09 -92.71 -0.75 7.19 16 40 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.05 1.89 7.76 -2.39 -0.02 1.88 16 43 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.01 0.64 8.00 -2.39 -0.02 0.62 16 46 H 0.36 19.52 6.38 -92.71 -0.59 18.93 16 47 H 0.24 15.55 6.77 -92.71 -0.63 14.92 16 48 H 0.09 1.89 7.73 -2.39 -0.02 1.87 16 49 H 0.08 1.93 7.67 -2.38 -0.02 1.92 16 Total: -1.00 -80.33 405.85 1.49 -78.84 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: -0.24 Total: 31.25 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: 6.92 Total: -7.51 kcal Atomic # 7 Polarization: -126.81 SS G_CDS: -5.58 Total: -132.39 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -1.66 Total: -25.58 kcal Atomic # 14 Polarization: 53.34 SS G_CDS: 2.05 Total: 55.39 kcal Total: -80.33 1.49 -78.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486206872.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.866 kcal (2) G-P(sol) polarization free energy of solvation -80.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds