Wall clock time and date at job start Tue Mar 31 2020 19:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 114.00134 * 2 1 4 4 C 1.52997 * 109.47264 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.46953 * 180.02562 * 4 3 2 6 6 C 1.35036 * 124.88548 * 124.72215 * 5 4 3 7 7 C 1.35366 * 107.22923 * 179.89119 * 6 5 4 8 8 C 1.41504 * 105.50203 * 0.35253 * 7 6 5 9 9 C 1.47713 * 126.51795 * 179.80061 * 8 7 6 10 10 O 1.21572 * 119.99781 * 359.97438 * 9 8 7 11 11 N 1.34771 * 119.99796 * 179.97438 * 9 8 7 12 12 C 1.46499 * 119.99923 * 179.97438 * 11 9 8 13 13 H 1.08998 * 110.01915 * 325.70561 * 12 11 9 14 14 C 1.54275 * 110.03386 * 87.09443 * 12 11 9 15 15 C 1.55009 * 104.13463 * 95.68468 * 14 12 11 16 16 C 1.54884 * 102.75544 * 37.95642 * 15 14 12 17 17 H 1.08998 * 110.49148 * 80.72436 * 16 15 14 18 18 C 1.53004 * 110.48608 * 203.36829 * 16 15 14 19 19 N 1.46510 * 109.46795 * 289.77059 * 18 16 15 20 20 C 1.36937 * 119.99837 * 179.97438 * 19 18 16 21 21 H 1.07997 * 119.99933 * 0.02562 * 20 19 18 22 22 C 1.38809 * 119.99813 * 180.02562 * 20 19 18 23 23 N 1.31620 * 119.99757 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00075 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47522 * 89.99678 * 24 22 20 26 26 H 1.48498 * 109.46927 * 209.99788 * 24 22 20 27 27 H 1.48496 * 109.46966 * 329.99467 * 24 22 20 28 28 C 1.53870 * 110.03402 * 204.31012 * 12 11 9 29 29 N 1.28472 * 124.88513 * 305.02102 * 5 4 3 30 30 H 1.08994 * 109.47036 * 300.00109 * 1 2 3 31 31 H 1.09002 * 109.46796 * 60.00253 * 1 2 3 32 32 H 1.08994 * 109.46829 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47103 * 300.00246 * 3 2 1 34 34 H 1.09004 * 109.47054 * 59.99750 * 3 2 1 35 35 H 1.09001 * 109.46832 * 299.99892 * 4 3 2 36 36 H 1.08992 * 109.47303 * 59.99596 * 4 3 2 37 37 H 1.08001 * 126.38520 * 359.97438 * 6 5 4 38 38 H 1.08002 * 127.25364 * 180.15942 * 7 6 5 39 39 H 0.96999 * 120.00200 * 359.97438 * 11 9 8 40 40 H 1.08990 * 110.48905 * 214.35927 * 14 12 11 41 41 H 1.09001 * 110.47917 * 336.99844 * 14 12 11 42 42 H 1.09002 * 110.76524 * 279.62811 * 15 14 12 43 43 H 1.08997 * 110.90072 * 156.34050 * 15 14 12 44 44 H 1.08997 * 109.47600 * 49.77226 * 18 16 15 45 45 H 1.09000 * 109.47250 * 169.77857 * 18 16 15 46 46 H 0.96996 * 119.99781 * 0.02562 * 19 18 16 47 47 H 0.97005 * 120.00025 * 179.97438 * 23 22 20 48 48 H 1.08997 * 110.03401 * 0.02562 * 28 12 11 49 49 H 1.09004 * 110.03498 * 121.38335 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1313 2.5230 0.0013 6 6 5.0214 2.9717 0.9122 7 6 5.3344 4.2445 0.5738 8 6 4.5722 4.5261 -0.5847 9 6 4.5579 5.7952 -1.3404 10 8 5.2496 6.7267 -0.9773 11 7 3.7779 5.9205 -2.4323 12 6 3.7632 7.1794 -3.1815 13 1 3.8878 8.0207 -2.4998 14 6 4.8909 7.1810 -4.2343 15 6 4.1935 6.7115 -5.5366 16 6 2.8080 7.3984 -5.4493 17 1 2.8766 8.4379 -5.7700 18 6 1.7813 6.6424 -6.2951 19 7 2.0842 6.8323 -7.7159 20 6 1.2953 6.2448 -8.6686 21 1 0.4496 5.6418 -8.3726 22 6 1.5825 6.4243 -10.0147 23 7 0.8246 5.8592 -10.9304 24 14 3.0457 7.4667 -10.5266 25 1 4.2511 6.6068 -10.6392 26 1 2.7660 8.1015 -11.8396 27 1 3.2830 8.5208 -9.5079 28 6 2.4395 7.3179 -3.9535 29 7 3.8780 3.4405 -0.8617 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6886 1.8464 -0.8900 34 1 1.6886 1.8464 0.8900 35 1 3.8567 0.6439 0.8909 36 1 3.8575 0.6436 -0.8890 37 1 5.4119 2.4179 1.7531 38 1 6.0189 4.9068 1.0829 39 1 3.2263 5.1772 -2.7222 40 1 5.2954 8.1854 -4.3585 41 1 5.6790 6.4837 -3.9501 42 1 4.0869 5.6268 -5.5485 43 1 4.7397 7.0541 -6.4155 44 1 1.8228 5.5804 -6.0536 45 1 0.7830 7.0247 -6.0822 46 1 2.8439 7.3736 -7.9817 47 1 1.0251 5.9849 -11.8712 48 1 1.8077 6.4488 -3.7704 49 1 1.9215 8.2265 -3.6465 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486206875.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:47 Heat of formation + Delta-G solvation = 6.426627 kcal Electronic energy + Delta-G solvation = -28498.557595 eV Core-core repulsion = 24462.789724 eV Total energy + Delta-G solvation = -4035.767871 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.01942 -39.88504 -38.53017 -37.95657 -34.91763 -34.40868 -33.31055 -31.38449 -30.99098 -29.98287 -29.00446 -28.03712 -26.83968 -24.95172 -24.21589 -22.70936 -21.85803 -21.76682 -20.50552 -20.14269 -19.51638 -18.25467 -17.49406 -17.35155 -16.81562 -16.51879 -16.36462 -15.96508 -15.50223 -15.23920 -14.64940 -14.47080 -14.36067 -14.20072 -13.90541 -13.72533 -13.46922 -13.27558 -13.14534 -12.66787 -12.57999 -12.20550 -12.15035 -11.89955 -11.83956 -11.63253 -11.30296 -11.21112 -10.90243 -10.86653 -10.51147 -10.34680 -10.31481 -10.30115 -10.15852 -10.00777 -9.63733 -9.56205 -9.43376 -9.04694 -8.86138 -7.19142 -5.74501 -3.09209 1.29338 1.79820 1.87096 3.04972 3.26369 3.30431 3.39657 3.42718 3.47284 3.93638 4.25350 4.36922 4.42684 4.58215 4.61697 4.65066 4.69865 4.80948 4.83726 4.92799 5.01882 5.03673 5.14540 5.20576 5.32226 5.36927 5.44439 5.53221 5.56600 5.59405 5.68349 5.78882 5.87647 5.95721 6.02919 6.05797 6.08755 6.24797 6.31848 6.41258 6.47037 6.48705 6.57679 6.73344 6.85612 7.33809 7.62807 8.02439 8.12724 8.45013 9.24769 9.97366 10.17825 11.44160 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010315 B = 0.002447 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.890285 B =11439.754532 C =13468.902979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.049 3.951 4 C 0.124 3.876 5 N -0.281 5.281 6 C -0.015 4.015 7 C -0.178 4.178 8 C -0.013 4.013 9 C 0.603 3.397 10 O -0.536 6.536 11 N -0.707 5.707 12 C 0.141 3.859 13 H 0.090 0.910 14 C -0.133 4.133 15 C -0.115 4.115 16 C -0.102 4.102 17 H 0.077 0.923 18 C 0.165 3.835 19 N -0.755 5.755 20 C -0.242 4.242 21 H 0.089 0.911 22 C 0.002 3.998 23 N -0.936 5.936 24 Si 0.884 3.116 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.277 1.277 28 C -0.121 4.121 29 N -0.259 5.259 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.184 0.816 38 H 0.164 0.836 39 H 0.407 0.593 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.027 0.973 45 H 0.025 0.975 46 H 0.361 0.639 47 H 0.259 0.741 48 H 0.074 0.926 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.833 -8.791 29.385 31.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.028 4.028 4 C 0.003 3.997 5 N -0.071 5.071 6 C -0.158 4.158 7 C -0.206 4.206 8 C -0.173 4.173 9 C 0.388 3.612 10 O -0.411 6.411 11 N -0.358 5.358 12 C 0.037 3.963 13 H 0.108 0.892 14 C -0.172 4.172 15 C -0.153 4.153 16 C -0.121 4.121 17 H 0.095 0.905 18 C 0.038 3.962 19 N -0.401 5.401 20 C -0.372 4.372 21 H 0.107 0.893 22 C -0.193 4.193 23 N -0.584 5.584 24 Si 0.715 3.285 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.203 1.203 28 C -0.160 4.160 29 N -0.095 5.095 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.131 0.869 36 H 0.123 0.877 37 H 0.201 0.799 38 H 0.181 0.819 39 H 0.242 0.758 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.044 0.956 45 H 0.043 0.957 46 H 0.193 0.807 47 H 0.069 0.931 48 H 0.093 0.907 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.405 -8.974 28.778 30.625 hybrid contribution 1.085 0.748 -0.068 1.320 sum 6.491 -8.226 28.710 30.562 Atomic orbital electron populations 1.22814 0.79564 1.03324 1.00613 1.87773 1.20881 1.26519 1.95641 1.22642 0.92001 0.85792 1.02407 1.21709 0.93218 0.78390 1.06356 1.45325 1.31363 1.11500 1.18894 1.22902 0.97977 0.96632 0.98240 1.21801 1.04488 0.96018 0.98288 1.22028 1.01668 0.94070 0.99575 1.16892 0.79730 0.84844 0.79768 1.90791 1.42257 1.39257 1.68759 1.46093 1.45221 1.16918 1.27554 1.21691 0.95716 0.85941 0.92954 0.89187 1.22810 0.97345 1.01843 0.95157 1.22560 0.95354 1.00651 0.96707 1.22230 0.95713 1.00443 0.93737 0.90501 1.20666 0.94967 0.96612 0.83926 1.42709 1.34548 1.61654 1.01180 1.19069 1.07808 1.24260 0.86051 0.89314 1.24672 0.98696 1.00331 0.95606 1.69706 1.40254 1.48423 1.00049 0.86540 0.83528 0.80688 0.77769 1.21088 1.21773 1.20290 1.22435 0.95787 1.02835 0.94942 1.73506 1.22624 0.97669 1.15703 0.93785 0.93325 0.89013 0.91074 0.92515 0.86891 0.87677 0.79927 0.81879 0.75775 0.90849 0.91494 0.91183 0.91491 0.95559 0.95715 0.80655 0.93111 0.90702 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -2.81 10.70 -35.23 -0.38 -3.18 16 3 C 0.05 0.31 6.04 37.16 0.22 0.54 16 4 C 0.12 0.66 6.77 -4.05 -0.03 0.64 16 5 N -0.28 -2.24 3.41 -61.34 -0.21 -2.45 16 6 C -0.02 -0.11 11.40 -17.17 -0.20 -0.30 16 7 C -0.18 -1.70 10.81 -39.36 -0.43 -2.12 16 8 C -0.01 -0.15 7.13 -82.76 -0.59 -0.74 16 9 C 0.60 8.07 7.82 -12.39 -0.10 7.97 16 10 O -0.54 -8.59 16.59 5.30 0.09 -8.50 16 11 N -0.71 -8.47 5.03 -53.70 -0.27 -8.74 16 12 C 0.14 1.72 3.23 -66.81 -0.22 1.50 16 13 H 0.09 1.14 7.59 -51.93 -0.39 0.74 16 14 C -0.13 -1.71 6.55 -25.00 -0.16 -1.87 16 15 C -0.12 -1.67 6.19 -24.68 -0.15 -1.83 16 16 C -0.10 -1.53 2.89 -88.96 -0.26 -1.78 16 17 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 18 C 0.17 3.16 5.54 -4.03 -0.02 3.13 16 19 N -0.76 -18.10 5.30 -59.90 -0.32 -18.42 16 20 C -0.24 -6.94 10.47 -15.06 -0.16 -7.10 16 21 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 22 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 23 N -0.94 -29.76 13.97 55.49 0.78 -28.99 16 24 Si 0.88 22.43 27.74 -169.99 -4.71 17.71 16 25 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 27 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 28 C -0.12 -1.46 6.14 -25.61 -0.16 -1.62 16 29 N -0.26 -2.76 11.36 33.42 0.38 -2.38 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.11 0.31 8.04 -51.93 -0.42 -0.11 16 36 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.18 0.52 8.06 -52.49 -0.42 0.10 16 38 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 39 H 0.41 4.50 8.03 -40.82 -0.33 4.18 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 0.90 8.04 -51.93 -0.42 0.48 16 42 H 0.07 1.06 7.97 -51.93 -0.41 0.65 16 43 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.03 0.51 8.02 -51.93 -0.42 0.09 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.36 8.45 5.50 -40.82 -0.22 8.23 16 47 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 48 H 0.07 0.87 7.31 -51.93 -0.38 0.49 16 49 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 404.79 15.07 6.10 6.10 Total: -1.00 -35.76 404.79 -7.84 -43.61 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -8.08 Total: 7.55 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -1.22 Total: -2.32 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: 0.36 Total: -60.96 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -0.29 Total: -11.69 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.71 Total: 17.71 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.76 -7.84 -43.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486206875.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.033 kcal (2) G-P(sol) polarization free energy of solvation -35.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds