Wall clock time and date at job start Tue Mar 31 2020 19:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 114.00134 * 2 1 4 4 C 1.52997 * 109.47264 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.46953 * 180.02562 * 4 3 2 6 6 C 1.35036 * 124.88548 * 124.72215 * 5 4 3 7 7 C 1.35366 * 107.22923 * 179.89119 * 6 5 4 8 8 C 1.41504 * 105.50203 * 0.35253 * 7 6 5 9 9 C 1.47713 * 126.51795 * 179.80061 * 8 7 6 10 10 O 1.21572 * 119.99781 * 359.97438 * 9 8 7 11 11 N 1.34771 * 119.99796 * 179.97438 * 9 8 7 12 12 C 1.46499 * 119.99923 * 179.97438 * 11 9 8 13 13 H 1.08998 * 110.01915 * 325.70561 * 12 11 9 14 14 C 1.54275 * 110.03386 * 87.09443 * 12 11 9 15 15 C 1.55009 * 104.13463 * 95.68468 * 14 12 11 16 16 C 1.54884 * 102.75544 * 37.95642 * 15 14 12 17 17 H 1.08998 * 110.49148 * 80.72436 * 16 15 14 18 18 C 1.53004 * 110.48608 * 203.36829 * 16 15 14 19 19 N 1.46510 * 109.46795 * 289.77059 * 18 16 15 20 20 C 1.36937 * 119.99837 * 179.97438 * 19 18 16 21 21 H 1.07997 * 119.99933 * 0.02562 * 20 19 18 22 22 C 1.38809 * 119.99813 * 180.02562 * 20 19 18 23 23 N 1.31620 * 119.99757 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00075 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47522 * 89.99678 * 24 22 20 26 26 H 1.48498 * 109.46927 * 209.99788 * 24 22 20 27 27 H 1.48496 * 109.46966 * 329.99467 * 24 22 20 28 28 C 1.53870 * 110.03402 * 204.31012 * 12 11 9 29 29 N 1.28472 * 124.88513 * 305.02102 * 5 4 3 30 30 H 1.08994 * 109.47036 * 300.00109 * 1 2 3 31 31 H 1.09002 * 109.46796 * 60.00253 * 1 2 3 32 32 H 1.08994 * 109.46829 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47103 * 300.00246 * 3 2 1 34 34 H 1.09004 * 109.47054 * 59.99750 * 3 2 1 35 35 H 1.09001 * 109.46832 * 299.99892 * 4 3 2 36 36 H 1.08992 * 109.47303 * 59.99596 * 4 3 2 37 37 H 1.08001 * 126.38520 * 359.97438 * 6 5 4 38 38 H 1.08002 * 127.25364 * 180.15942 * 7 6 5 39 39 H 0.96999 * 120.00200 * 359.97438 * 11 9 8 40 40 H 1.08990 * 110.48905 * 214.35927 * 14 12 11 41 41 H 1.09001 * 110.47917 * 336.99844 * 14 12 11 42 42 H 1.09002 * 110.76524 * 279.62811 * 15 14 12 43 43 H 1.08997 * 110.90072 * 156.34050 * 15 14 12 44 44 H 1.08997 * 109.47600 * 49.77226 * 18 16 15 45 45 H 1.09000 * 109.47250 * 169.77857 * 18 16 15 46 46 H 0.96996 * 119.99781 * 0.02562 * 19 18 16 47 47 H 0.97005 * 120.00025 * 179.97438 * 23 22 20 48 48 H 1.08997 * 110.03401 * 0.02562 * 28 12 11 49 49 H 1.09004 * 110.03498 * 121.38335 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1313 2.5230 0.0013 6 6 5.0214 2.9717 0.9122 7 6 5.3344 4.2445 0.5738 8 6 4.5722 4.5261 -0.5847 9 6 4.5579 5.7952 -1.3404 10 8 5.2496 6.7267 -0.9773 11 7 3.7779 5.9205 -2.4323 12 6 3.7632 7.1794 -3.1815 13 1 3.8878 8.0207 -2.4998 14 6 4.8909 7.1810 -4.2343 15 6 4.1935 6.7115 -5.5366 16 6 2.8080 7.3984 -5.4493 17 1 2.8766 8.4379 -5.7700 18 6 1.7813 6.6424 -6.2951 19 7 2.0842 6.8323 -7.7159 20 6 1.2953 6.2448 -8.6686 21 1 0.4496 5.6418 -8.3726 22 6 1.5825 6.4243 -10.0147 23 7 0.8246 5.8592 -10.9304 24 14 3.0457 7.4667 -10.5266 25 1 4.2511 6.6068 -10.6392 26 1 2.7660 8.1015 -11.8396 27 1 3.2830 8.5208 -9.5079 28 6 2.4395 7.3179 -3.9535 29 7 3.8780 3.4405 -0.8617 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6886 1.8464 -0.8900 34 1 1.6886 1.8464 0.8900 35 1 3.8567 0.6439 0.8909 36 1 3.8575 0.6436 -0.8890 37 1 5.4119 2.4179 1.7531 38 1 6.0189 4.9068 1.0829 39 1 3.2263 5.1772 -2.7222 40 1 5.2954 8.1854 -4.3585 41 1 5.6790 6.4837 -3.9501 42 1 4.0869 5.6268 -5.5485 43 1 4.7397 7.0541 -6.4155 44 1 1.8228 5.5804 -6.0536 45 1 0.7830 7.0247 -6.0822 46 1 2.8439 7.3736 -7.9817 47 1 1.0251 5.9849 -11.8712 48 1 1.8077 6.4488 -3.7704 49 1 1.9215 8.2265 -3.6465 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486206875.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:46 Heat of formation + Delta-G solvation = -19.396653 kcal Electronic energy + Delta-G solvation = -28499.677376 eV Core-core repulsion = 24462.789724 eV Total energy + Delta-G solvation = -4036.887652 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.68235 -40.92165 -39.18703 -38.96383 -36.59641 -35.04881 -34.64545 -33.25899 -31.74218 -30.70986 -30.28611 -29.15276 -27.36692 -26.28773 -25.22951 -23.68264 -23.39574 -22.44140 -21.49831 -21.23572 -20.64618 -19.53306 -18.91181 -18.01973 -17.47161 -17.37346 -17.03673 -16.71191 -16.64273 -16.34958 -15.94495 -15.89197 -15.30538 -15.18686 -14.95106 -14.72841 -14.65800 -14.35568 -14.20964 -14.00541 -13.68081 -13.54481 -13.04006 -12.88148 -12.71105 -12.64624 -12.52811 -12.34568 -12.20582 -11.98633 -11.92935 -11.85259 -11.67784 -11.58845 -11.50250 -11.20708 -10.95439 -10.79026 -10.36596 -10.14159 -9.97578 -9.28349 -8.03234 -5.35964 0.49042 1.16859 1.31937 1.37432 1.40692 1.48119 2.16173 2.36061 2.48162 2.77803 3.28368 3.37653 3.48664 3.56285 3.75977 3.81453 3.84206 3.95817 3.98634 4.13591 4.20921 4.40125 4.43446 4.47130 4.49811 4.50963 4.59978 4.61027 4.65380 4.65711 4.70841 4.74239 4.77644 4.83668 4.91153 4.99687 5.08640 5.13535 5.20066 5.31662 5.34245 5.50284 5.59145 5.75657 5.80277 6.00204 6.21371 6.42809 6.86721 7.08342 7.15746 7.85444 8.04724 9.18556 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010315 B = 0.002447 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.890285 B =11439.754532 C =13468.902979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.052 3.948 4 C 0.122 3.878 5 N -0.278 5.278 6 C 0.008 3.992 7 C -0.201 4.201 8 C -0.041 4.041 9 C 0.601 3.399 10 O -0.569 6.569 11 N -0.701 5.701 12 C 0.145 3.855 13 H 0.090 0.910 14 C -0.124 4.124 15 C -0.114 4.114 16 C -0.093 4.093 17 H 0.081 0.919 18 C 0.162 3.838 19 N -0.757 5.757 20 C -0.234 4.234 21 H 0.055 0.945 22 C -0.066 4.066 23 N -0.985 5.985 24 Si 0.955 3.045 25 H -0.278 1.278 26 H -0.295 1.295 27 H -0.250 1.250 28 C -0.111 4.111 29 N -0.278 5.278 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.104 0.896 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.149 0.851 36 H 0.105 0.895 37 H 0.230 0.770 38 H 0.167 0.833 39 H 0.411 0.589 40 H 0.084 0.916 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.024 0.976 45 H 0.024 0.976 46 H 0.366 0.634 47 H 0.258 0.742 48 H 0.079 0.921 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.215 -8.851 31.689 33.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.026 4.026 4 C 0.002 3.998 5 N -0.067 5.067 6 C -0.134 4.134 7 C -0.229 4.229 8 C -0.200 4.200 9 C 0.387 3.613 10 O -0.447 6.447 11 N -0.352 5.352 12 C 0.041 3.959 13 H 0.108 0.892 14 C -0.163 4.163 15 C -0.151 4.151 16 C -0.112 4.112 17 H 0.100 0.900 18 C 0.036 3.964 19 N -0.403 5.403 20 C -0.365 4.365 21 H 0.074 0.926 22 C -0.257 4.257 23 N -0.636 5.636 24 Si 0.782 3.218 25 H -0.205 1.205 26 H -0.222 1.222 27 H -0.175 1.175 28 C -0.149 4.149 29 N -0.114 5.114 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.122 0.878 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.166 0.834 36 H 0.124 0.876 37 H 0.246 0.754 38 H 0.184 0.816 39 H 0.247 0.753 40 H 0.102 0.898 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.042 0.958 45 H 0.042 0.958 46 H 0.199 0.801 47 H 0.067 0.933 48 H 0.098 0.902 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.778 -9.038 31.122 33.109 hybrid contribution 0.546 0.616 -0.702 1.082 sum 7.324 -8.421 30.420 32.403 Atomic orbital electron populations 1.22958 0.78791 1.04267 1.00877 1.87747 1.21836 1.26866 1.95675 1.22591 0.92771 0.85462 1.01746 1.21957 0.92403 0.77259 1.08162 1.45624 1.31068 1.11702 1.18331 1.23532 0.96046 0.95699 0.98148 1.22030 1.05139 0.97540 0.98174 1.21947 1.03409 0.93929 1.00756 1.17167 0.79145 0.85195 0.79773 1.90756 1.43678 1.40550 1.69716 1.46068 1.44920 1.16967 1.27228 1.21631 0.95452 0.86083 0.92744 0.89171 1.22736 0.97169 1.02148 0.94234 1.22512 0.95274 0.99998 0.97354 1.22115 0.94538 0.99857 0.94728 0.90044 1.20843 0.96342 0.97130 0.82048 1.42725 1.33998 1.61232 1.02359 1.19059 1.07019 1.23164 0.87227 0.92650 1.25521 1.02182 1.02381 0.95625 1.69889 1.42706 1.50670 1.00350 0.85407 0.79467 0.79406 0.77545 1.20467 1.22203 1.17464 1.22355 0.95876 1.04057 0.92658 1.73455 1.23085 0.98012 1.16894 0.92817 0.93793 0.87811 0.92909 0.92063 0.83362 0.87643 0.75406 0.81555 0.75302 0.89787 0.92222 0.92179 0.92163 0.95846 0.95789 0.80082 0.93345 0.90209 0.88858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.40 -5.26 10.70 -148.98 -1.59 -6.85 16 3 C 0.05 0.59 6.04 71.98 0.43 1.03 16 4 C 0.12 1.01 6.77 86.38 0.58 1.60 16 5 N -0.28 -3.84 3.41 -347.97 -1.19 -5.02 16 6 C 0.01 0.09 11.40 83.54 0.95 1.04 16 7 C -0.20 -3.58 10.81 22.41 0.24 -3.34 16 8 C -0.04 -0.95 7.13 42.46 0.30 -0.65 16 9 C 0.60 16.06 7.82 86.75 0.68 16.74 16 10 O -0.57 -18.34 16.59 -3.94 -0.07 -18.40 16 11 N -0.70 -16.45 5.03 -442.09 -2.23 -18.68 16 12 C 0.15 3.34 3.23 45.72 0.15 3.49 16 13 H 0.09 2.15 7.59 -2.39 -0.02 2.13 16 14 C -0.12 -3.02 6.55 31.71 0.21 -2.82 16 15 C -0.11 -3.16 6.19 31.93 0.20 -2.97 16 16 C -0.09 -2.63 2.89 -9.72 -0.03 -2.66 16 17 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 18 C 0.16 6.07 5.54 86.38 0.48 6.55 16 19 N -0.76 -35.73 5.30 -343.43 -1.82 -37.55 16 20 C -0.23 -13.58 10.47 84.03 0.88 -12.70 16 21 H 0.06 3.52 8.06 -2.91 -0.02 3.49 16 22 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 23 N -0.99 -64.11 13.97 21.65 0.30 -63.80 16 24 Si 0.95 46.13 27.74 68.60 1.90 48.03 16 25 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 26 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 27 H -0.25 -10.87 6.52 99.48 0.65 -10.22 16 28 C -0.11 -2.46 6.14 31.32 0.19 -2.27 16 29 N -0.28 -5.69 11.36 -48.17 -0.55 -6.24 16 30 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.05 0.79 8.08 -2.39 -0.02 0.77 16 34 H 0.06 0.63 8.14 -2.38 -0.02 0.62 16 35 H 0.15 0.21 8.04 -2.39 -0.02 0.19 16 36 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.23 0.18 8.06 -2.91 -0.02 0.16 16 38 H 0.17 2.71 8.06 -2.91 -0.02 2.69 16 39 H 0.41 8.96 8.03 -92.71 -0.74 8.21 16 40 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.06 1.56 8.04 -2.39 -0.02 1.54 16 42 H 0.06 1.78 7.97 -2.39 -0.02 1.76 16 43 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.02 0.90 8.02 -2.39 -0.02 0.88 16 45 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.37 16.46 5.50 -92.71 -0.51 15.95 16 47 H 0.26 15.94 8.31 -92.70 -0.77 15.17 16 48 H 0.08 1.72 7.31 -2.39 -0.02 1.70 16 49 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -79.02 404.79 1.40 -77.62 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: -0.36 Total: 29.81 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 6.99 Total: 1.08 kcal Atomic # 7 Polarization: -125.82 SS G_CDS: -5.47 Total: -131.29 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -1.66 Total: -25.26 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.90 Total: 48.03 kcal Total: -79.02 1.40 -77.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486206875.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.227 kcal (2) G-P(sol) polarization free energy of solvation -79.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds